Strain Fitness in Pantoea sp. MT58 around IAI47_21180

Experiment: Ying_sugar7 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_21175 and IAI47_21180 are separated by 228 nucleotidesIAI47_21180 and IAI47_21185 are separated by 44 nucleotides IAI47_21175: IAI47_21175 - beta-galactosidase, at 486,033 to 488,063 _21175 IAI47_21180: IAI47_21180 - IS6 family transposase, at 488,292 to 488,986 _21180 IAI47_21185: IAI47_21185 - PAS domain-containing protein, at 489,031 to 490,194 _21185 Position (kb) 488 489Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 487.346 kb on + strand, within IAI47_21175at 487.346 kb on + strand, within IAI47_21175at 487.347 kb on - strand, within IAI47_21175at 487.347 kb on - strand, within IAI47_21175at 487.352 kb on + strand, within IAI47_21175at 487.353 kb on - strand, within IAI47_21175at 487.356 kb on - strand, within IAI47_21175at 487.356 kb on - strand, within IAI47_21175at 487.386 kb on - strand, within IAI47_21175at 487.433 kb on - strand, within IAI47_21175at 487.463 kb on + strand, within IAI47_21175at 487.464 kb on - strand, within IAI47_21175at 487.464 kb on - strand, within IAI47_21175at 487.464 kb on - strand, within IAI47_21175at 487.466 kb on + strand, within IAI47_21175at 487.466 kb on + strand, within IAI47_21175at 487.467 kb on - strand, within IAI47_21175at 487.467 kb on - strand, within IAI47_21175at 487.470 kb on - strand, within IAI47_21175at 487.616 kb on + strand, within IAI47_21175at 487.617 kb on - strand, within IAI47_21175at 487.621 kb on + strand, within IAI47_21175at 487.622 kb on - strand, within IAI47_21175at 487.624 kb on + strand, within IAI47_21175at 487.624 kb on + strand, within IAI47_21175at 487.624 kb on + strand, within IAI47_21175at 487.624 kb on + strand, within IAI47_21175at 487.625 kb on - strand, within IAI47_21175at 487.628 kb on + strand, within IAI47_21175at 487.628 kb on + strand, within IAI47_21175at 487.629 kb on - strand, within IAI47_21175at 487.683 kb on + strand, within IAI47_21175at 487.698 kb on - strand, within IAI47_21175at 487.711 kb on + strand, within IAI47_21175at 487.716 kb on + strand, within IAI47_21175at 487.716 kb on + strand, within IAI47_21175at 487.717 kb on - strand, within IAI47_21175at 487.717 kb on - strand, within IAI47_21175at 487.717 kb on - strand, within IAI47_21175at 487.717 kb on - strand, within IAI47_21175at 487.720 kb on + strand, within IAI47_21175at 487.721 kb on - strand, within IAI47_21175at 487.737 kb on - strand, within IAI47_21175at 487.759 kb on + strand, within IAI47_21175at 487.759 kb on + strand, within IAI47_21175at 487.759 kb on + strand, within IAI47_21175at 487.759 kb on + strand, within IAI47_21175at 487.759 kb on + strand, within IAI47_21175at 487.759 kb on + strand, within IAI47_21175at 487.759 kb on + strand, within IAI47_21175at 487.759 kb on + strand, within IAI47_21175at 487.760 kb on - strand, within IAI47_21175at 487.760 kb on - strand, within IAI47_21175at 487.760 kb on - strand, within IAI47_21175at 487.760 kb on - strand, within IAI47_21175at 487.760 kb on - strand, within IAI47_21175at 487.760 kb on - strand, within IAI47_21175at 487.760 kb on - strand, within IAI47_21175at 487.760 kb on - strand, within IAI47_21175at 487.831 kb on + strand, within IAI47_21175at 487.831 kb on + strand, within IAI47_21175at 487.832 kb on - strand, within IAI47_21175at 487.832 kb on - strand, within IAI47_21175at 487.832 kb on - strand, within IAI47_21175at 487.860 kb on - strand, within IAI47_21175at 487.865 kb on + strandat 487.866 kb on - strandat 487.866 kb on - strandat 487.893 kb on + strandat 487.894 kb on - strandat 487.894 kb on - strandat 487.894 kb on - strandat 487.931 kb on - strandat 487.931 kb on - strandat 487.931 kb on - strandat 487.934 kb on + strandat 487.934 kb on + strandat 487.934 kb on + strandat 487.934 kb on + strandat 487.935 kb on - strandat 487.935 kb on - strandat 487.935 kb on - strandat 487.935 kb on - strandat 487.935 kb on - strandat 487.955 kb on + strandat 487.955 kb on + strandat 487.955 kb on + strandat 487.956 kb on - strandat 487.967 kb on + strandat 487.968 kb on - strandat 487.968 kb on - strandat 487.968 kb on - strandat 487.968 kb on - strandat 487.968 kb on - strandat 487.968 kb on - strandat 487.992 kb on + strandat 487.992 kb on + strandat 487.992 kb on + strandat 487.992 kb on + strandat 487.992 kb on + strandat 487.993 kb on - strandat 487.993 kb on - strandat 487.993 kb on - strandat 488.021 kb on + strandat 488.021 kb on + strandat 488.021 kb on + strandat 488.021 kb on + strandat 488.021 kb on + strandat 488.022 kb on - strandat 488.022 kb on - strandat 488.022 kb on - strandat 488.023 kb on + strandat 488.023 kb on + strandat 488.023 kb on + strandat 488.023 kb on + strandat 488.024 kb on - strandat 488.024 kb on - strandat 488.024 kb on - strandat 488.024 kb on - strandat 488.024 kb on - strandat 488.024 kb on - strandat 488.024 kb on - strandat 488.024 kb on - strandat 488.032 kb on + strandat 488.032 kb on + strandat 488.033 kb on - strandat 488.033 kb on - strandat 488.036 kb on - strandat 488.036 kb on - strandat 488.036 kb on - strandat 488.036 kb on - strandat 488.036 kb on - strandat 488.047 kb on + strandat 488.047 kb on + strandat 488.047 kb on + strandat 488.047 kb on + strandat 488.047 kb on + strandat 488.048 kb on - strandat 488.048 kb on - strandat 488.048 kb on - strandat 488.048 kb on - strandat 488.048 kb on - strandat 488.048 kb on - strandat 488.048 kb on - strandat 488.049 kb on + strandat 488.049 kb on + strandat 488.050 kb on - strandat 488.050 kb on - strandat 488.050 kb on - strandat 488.050 kb on - strandat 488.050 kb on - strandat 488.050 kb on - strandat 488.052 kb on + strandat 488.052 kb on + strandat 488.052 kb on + strandat 488.052 kb on + strandat 488.053 kb on - strandat 488.053 kb on - strandat 488.053 kb on - strandat 488.053 kb on - strandat 488.053 kb on - strandat 488.053 kb on - strandat 488.053 kb on - strandat 488.053 kb on - strandat 488.077 kb on + strandat 488.078 kb on - strandat 488.122 kb on + strandat 488.122 kb on + strandat 488.122 kb on + strandat 488.123 kb on - strandat 488.123 kb on - strandat 488.123 kb on - strandat 488.126 kb on + strandat 488.126 kb on + strandat 488.126 kb on + strandat 488.126 kb on + strandat 488.126 kb on + strandat 488.126 kb on + strandat 488.127 kb on - strandat 488.127 kb on - strandat 488.127 kb on - strandat 488.127 kb on - strandat 488.127 kb on - strandat 488.127 kb on - strandat 488.127 kb on - strandat 488.147 kb on + strandat 488.147 kb on + strandat 488.148 kb on - strandat 488.148 kb on - strandat 488.148 kb on - strandat 488.148 kb on - strandat 488.148 kb on - strandat 488.174 kb on + strandat 488.174 kb on + strandat 488.174 kb on + strandat 488.174 kb on + strandat 488.175 kb on - strandat 488.175 kb on - strandat 488.175 kb on - strandat 488.175 kb on - strandat 488.175 kb on - strandat 488.194 kb on + strandat 488.195 kb on - strandat 488.209 kb on + strandat 488.210 kb on - strandat 488.210 kb on - strandat 488.228 kb on + strandat 488.229 kb on - strandat 488.229 kb on - strandat 488.229 kb on - strandat 488.229 kb on - strandat 488.231 kb on + strandat 488.233 kb on + strandat 488.234 kb on - strandat 488.237 kb on - strandat 488.259 kb on - strandat 488.259 kb on - strandat 488.259 kb on - strandat 488.259 kb on - strandat 488.367 kb on + strand, within IAI47_21180at 488.367 kb on + strand, within IAI47_21180at 488.379 kb on + strand, within IAI47_21180at 488.379 kb on + strand, within IAI47_21180at 488.456 kb on + strand, within IAI47_21180at 488.495 kb on - strand, within IAI47_21180at 488.495 kb on - strand, within IAI47_21180at 488.495 kb on - strand, within IAI47_21180at 488.495 kb on - strand, within IAI47_21180at 488.495 kb on - strand, within IAI47_21180at 488.495 kb on - strand, within IAI47_21180at 488.780 kb on - strand, within IAI47_21180at 488.780 kb on - strand, within IAI47_21180at 488.780 kb on - strand, within IAI47_21180at 488.999 kb on + strandat 488.999 kb on + strandat 488.999 kb on + strandat 489.017 kb on + strandat 489.017 kb on + strandat 489.032 kb on + strandat 489.149 kb on - strand, within IAI47_21185at 489.210 kb on + strand, within IAI47_21185at 489.210 kb on + strand, within IAI47_21185at 489.210 kb on + strand, within IAI47_21185at 489.211 kb on - strand, within IAI47_21185at 489.310 kb on + strand, within IAI47_21185at 489.311 kb on - strand, within IAI47_21185at 489.311 kb on - strand, within IAI47_21185at 489.324 kb on - strand, within IAI47_21185at 489.352 kb on + strand, within IAI47_21185at 489.429 kb on - strand, within IAI47_21185at 489.440 kb on + strand, within IAI47_21185at 489.463 kb on + strand, within IAI47_21185at 489.465 kb on + strand, within IAI47_21185at 489.465 kb on + strand, within IAI47_21185at 489.465 kb on + strand, within IAI47_21185at 489.476 kb on - strand, within IAI47_21185at 489.477 kb on + strand, within IAI47_21185at 489.478 kb on - strand, within IAI47_21185at 489.478 kb on - strand, within IAI47_21185at 489.478 kb on - strand, within IAI47_21185at 489.514 kb on + strand, within IAI47_21185at 489.515 kb on - strand, within IAI47_21185at 489.535 kb on + strand, within IAI47_21185at 489.535 kb on + strand, within IAI47_21185at 489.535 kb on + strand, within IAI47_21185at 489.536 kb on - strand, within IAI47_21185at 489.536 kb on - strand, within IAI47_21185at 489.619 kb on + strand, within IAI47_21185at 489.619 kb on + strand, within IAI47_21185at 489.620 kb on - strand, within IAI47_21185at 489.620 kb on - strand, within IAI47_21185at 489.620 kb on - strand, within IAI47_21185at 489.620 kb on - strand, within IAI47_21185at 489.620 kb on - strand, within IAI47_21185at 489.620 kb on - strand, within IAI47_21185at 489.620 kb on - strand, within IAI47_21185at 489.634 kb on - strand, within IAI47_21185at 489.634 kb on - strand, within IAI47_21185at 489.634 kb on - strand, within IAI47_21185at 489.634 kb on - strand, within IAI47_21185at 489.796 kb on + strand, within IAI47_21185at 489.796 kb on + strand, within IAI47_21185at 489.797 kb on - strand, within IAI47_21185at 489.818 kb on + strand, within IAI47_21185at 489.818 kb on + strand, within IAI47_21185at 489.819 kb on - strand, within IAI47_21185at 489.819 kb on - strand, within IAI47_21185at 489.819 kb on - strand, within IAI47_21185at 489.856 kb on + strand, within IAI47_21185at 489.857 kb on - strand, within IAI47_21185at 489.890 kb on - strand, within IAI47_21185at 489.912 kb on + strand, within IAI47_21185at 489.912 kb on + strand, within IAI47_21185at 489.913 kb on - strand, within IAI47_21185at 489.913 kb on - strand, within IAI47_21185at 489.913 kb on - strand, within IAI47_21185at 489.913 kb on - strand, within IAI47_21185at 489.957 kb on + strand, within IAI47_21185at 489.957 kb on + strand, within IAI47_21185at 489.957 kb on + strand, within IAI47_21185at 489.958 kb on - strand, within IAI47_21185at 489.960 kb on + strand, within IAI47_21185at 489.960 kb on + strand, within IAI47_21185at 489.982 kb on + strand, within IAI47_21185

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3
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487,346 + IAI47_21175 0.65 -0.5
487,346 + IAI47_21175 0.65 +0.9
487,347 - IAI47_21175 0.65 +0.9
487,347 - IAI47_21175 0.65 +1.5
487,352 + IAI47_21175 0.65 -0.4
487,353 - IAI47_21175 0.65 +0.9
487,356 - IAI47_21175 0.65 +1.0
487,356 - IAI47_21175 0.65 -0.7
487,386 - IAI47_21175 0.67 +0.9
487,433 - IAI47_21175 0.69 +0.8
487,463 + IAI47_21175 0.70 -0.5
487,464 - IAI47_21175 0.70 -1.0
487,464 - IAI47_21175 0.70 +0.2
487,464 - IAI47_21175 0.70 +0.3
487,466 + IAI47_21175 0.71 +0.8
487,466 + IAI47_21175 0.71 +0.1
487,467 - IAI47_21175 0.71 -1.3
487,467 - IAI47_21175 0.71 +0.5
487,470 - IAI47_21175 0.71 +0.1
487,616 + IAI47_21175 0.78 -0.4
487,617 - IAI47_21175 0.78 -0.0
487,621 + IAI47_21175 0.78 -0.6
487,622 - IAI47_21175 0.78 -0.9
487,624 + IAI47_21175 0.78 -0.4
487,624 + IAI47_21175 0.78 -2.7
487,624 + IAI47_21175 0.78 +0.7
487,624 + IAI47_21175 0.78 -0.1
487,625 - IAI47_21175 0.78 +1.3
487,628 + IAI47_21175 0.79 +0.4
487,628 + IAI47_21175 0.79 +0.6
487,629 - IAI47_21175 0.79 +0.3
487,683 + IAI47_21175 0.81 +0.2
487,698 - IAI47_21175 0.82 +0.6
487,711 + IAI47_21175 0.83 -0.4
487,716 + IAI47_21175 0.83 -0.3
487,716 + IAI47_21175 0.83 -1.9
487,717 - IAI47_21175 0.83 -1.9
487,717 - IAI47_21175 0.83 +1.1
487,717 - IAI47_21175 0.83 -0.3
487,717 - IAI47_21175 0.83 -0.8
487,720 + IAI47_21175 0.83 -0.3
487,721 - IAI47_21175 0.83 -1.8
487,737 - IAI47_21175 0.84 -0.3
487,759 + IAI47_21175 0.85 -0.5
487,759 + IAI47_21175 0.85 -1.9
487,759 + IAI47_21175 0.85 -0.4
487,759 + IAI47_21175 0.85 -0.2
487,759 + IAI47_21175 0.85 +1.1
487,759 + IAI47_21175 0.85 -1.4
487,759 + IAI47_21175 0.85 +0.1
487,759 + IAI47_21175 0.85 -0.6
487,760 - IAI47_21175 0.85 -0.5
487,760 - IAI47_21175 0.85 -0.6
487,760 - IAI47_21175 0.85 +0.7
487,760 - IAI47_21175 0.85 +0.5
487,760 - IAI47_21175 0.85 -0.6
487,760 - IAI47_21175 0.85 -1.3
487,760 - IAI47_21175 0.85 +0.6
487,760 - IAI47_21175 0.85 +0.1
487,831 + IAI47_21175 0.89 -0.6
487,831 + IAI47_21175 0.89 -0.3
487,832 - IAI47_21175 0.89 +0.8
487,832 - IAI47_21175 0.89 +1.3
487,832 - IAI47_21175 0.89 +0.7
487,860 - IAI47_21175 0.90 -1.6
487,865 + -1.1
487,866 - +0.5
487,866 - +2.0
487,893 + +0.1
487,894 - +0.9
487,894 - +0.3
487,894 - +1.7
487,931 - +0.3
487,931 - -0.1
487,931 - +0.2
487,934 + -0.5
487,934 + +1.0
487,934 + +1.4
487,934 + -1.5
487,935 - -0.3
487,935 - +2.1
487,935 - +0.8
487,935 - +0.1
487,935 - +0.7
487,955 + +0.1
487,955 + -1.8
487,955 + -0.9
487,956 - -0.4
487,967 + +0.6
487,968 - +1.6
487,968 - +1.3
487,968 - +0.3
487,968 - -0.5
487,968 - +0.1
487,968 - +1.7
487,992 + -0.4
487,992 + +0.4
487,992 + +1.1
487,992 + -0.9
487,992 + -0.2
487,993 - +1.6
487,993 - +1.5
487,993 - +0.9
488,021 + +0.1
488,021 + -1.5
488,021 + +0.4
488,021 + +2.9
488,021 + +0.1
488,022 - +0.1
488,022 - +0.1
488,022 - -0.7
488,023 + +1.7
488,023 + -0.8
488,023 + -1.5
488,023 + -0.3
488,024 - -0.6
488,024 - -1.9
488,024 - -0.7
488,024 - +0.7
488,024 - -0.5
488,024 - -2.7
488,024 - -0.0
488,024 - +0.6
488,032 + +0.4
488,032 + +0.4
488,033 - -0.8
488,033 - +0.7
488,036 - -1.4
488,036 - +0.4
488,036 - -0.4
488,036 - -0.5
488,036 - -1.0
488,047 + +1.1
488,047 + +0.4
488,047 + -0.5
488,047 + +0.8
488,047 + -0.2
488,048 - -0.2
488,048 - +2.4
488,048 - -0.7
488,048 - -0.5
488,048 - +0.8
488,048 - -1.9
488,048 - +0.8
488,049 + -2.1
488,049 + -0.7
488,050 - +1.7
488,050 - +0.1
488,050 - +1.1
488,050 - +0.1
488,050 - -1.1
488,050 - +1.7
488,052 + -1.7
488,052 + +0.8
488,052 + -0.1
488,052 + -2.7
488,053 - +1.7
488,053 - -1.5
488,053 - -1.3
488,053 - -0.7
488,053 - +0.4
488,053 - +0.1
488,053 - +1.5
488,053 - +1.2
488,077 + +0.1
488,078 - -0.3
488,122 + -0.6
488,122 + -0.1
488,122 + -0.6
488,123 - -0.4
488,123 - -0.4
488,123 - -1.6
488,126 + -1.4
488,126 + -0.6
488,126 + +1.1
488,126 + +0.2
488,126 + -0.2
488,126 + +0.1
488,127 - +0.1
488,127 - +0.9
488,127 - -2.1
488,127 - -2.2
488,127 - +0.7
488,127 - +0.6
488,127 - -1.7
488,147 + +0.3
488,147 + -1.0
488,148 - +0.1
488,148 - -3.1
488,148 - -0.1
488,148 - +1.3
488,148 - -0.5
488,174 + -1.3
488,174 + +0.8
488,174 + +1.1
488,174 + +1.7
488,175 - -1.7
488,175 - +0.1
488,175 - -0.0
488,175 - -1.1
488,175 - -2.5
488,194 + -0.1
488,195 - -0.3
488,209 + -0.2
488,210 - +2.7
488,210 - +2.8
488,228 + -1.7
488,229 - -0.7
488,229 - +2.1
488,229 - +0.5
488,229 - +0.9
488,231 + -0.5
488,233 + +0.1
488,234 - -0.8
488,237 - +0.4
488,259 - -0.6
488,259 - -0.6
488,259 - +1.1
488,259 - +0.8
488,367 + IAI47_21180 0.11 +0.1
488,367 + IAI47_21180 0.11 +0.7
488,379 + IAI47_21180 0.13 +2.7
488,379 + IAI47_21180 0.13 +0.4
488,456 + IAI47_21180 0.24 +0.7
488,495 - IAI47_21180 0.29 +1.1
488,495 - IAI47_21180 0.29 +3.4
488,495 - IAI47_21180 0.29 +3.0
488,495 - IAI47_21180 0.29 -0.5
488,495 - IAI47_21180 0.29 +0.7
488,495 - IAI47_21180 0.29 +0.5
488,780 - IAI47_21180 0.70 -0.1
488,780 - IAI47_21180 0.70 +1.7
488,780 - IAI47_21180 0.70 -0.7
488,999 + -1.7
488,999 + -0.2
488,999 + -0.9
489,017 + +0.1
489,017 + -0.6
489,032 + -1.6
489,149 - IAI47_21185 0.10 +1.1
489,210 + IAI47_21185 0.15 -2.0
489,210 + IAI47_21185 0.15 +0.5
489,210 + IAI47_21185 0.15 -0.0
489,211 - IAI47_21185 0.15 -0.3
489,310 + IAI47_21185 0.24 +0.1
489,311 - IAI47_21185 0.24 -0.3
489,311 - IAI47_21185 0.24 -0.2
489,324 - IAI47_21185 0.25 -0.3
489,352 + IAI47_21185 0.28 +0.7
489,429 - IAI47_21185 0.34 +0.7
489,440 + IAI47_21185 0.35 +0.5
489,463 + IAI47_21185 0.37 -0.1
489,465 + IAI47_21185 0.37 +0.5
489,465 + IAI47_21185 0.37 -0.9
489,465 + IAI47_21185 0.37 +0.4
489,476 - IAI47_21185 0.38 +0.1
489,477 + IAI47_21185 0.38 +0.1
489,478 - IAI47_21185 0.38 +2.1
489,478 - IAI47_21185 0.38 +0.3
489,478 - IAI47_21185 0.38 +0.9
489,514 + IAI47_21185 0.41 +0.8
489,515 - IAI47_21185 0.42 -0.2
489,535 + IAI47_21185 0.43 +0.5
489,535 + IAI47_21185 0.43 +0.1
489,535 + IAI47_21185 0.43 +0.6
489,536 - IAI47_21185 0.43 -0.6
489,536 - IAI47_21185 0.43 -0.9
489,619 + IAI47_21185 0.51 +0.3
489,619 + IAI47_21185 0.51 +1.2
489,620 - IAI47_21185 0.51 -0.2
489,620 - IAI47_21185 0.51 +0.7
489,620 - IAI47_21185 0.51 -0.9
489,620 - IAI47_21185 0.51 -0.4
489,620 - IAI47_21185 0.51 +0.7
489,620 - IAI47_21185 0.51 +0.7
489,620 - IAI47_21185 0.51 +0.1
489,634 - IAI47_21185 0.52 +0.6
489,634 - IAI47_21185 0.52 -2.7
489,634 - IAI47_21185 0.52 +0.5
489,634 - IAI47_21185 0.52 +1.1
489,796 + IAI47_21185 0.66 +1.2
489,796 + IAI47_21185 0.66 +0.7
489,797 - IAI47_21185 0.66 +0.8
489,818 + IAI47_21185 0.68 +1.3
489,818 + IAI47_21185 0.68 +0.8
489,819 - IAI47_21185 0.68 +0.6
489,819 - IAI47_21185 0.68 +0.4
489,819 - IAI47_21185 0.68 +0.1
489,856 + IAI47_21185 0.71 +0.6
489,857 - IAI47_21185 0.71 +0.3
489,890 - IAI47_21185 0.74 -0.9
489,912 + IAI47_21185 0.76 +0.1
489,912 + IAI47_21185 0.76 -0.3
489,913 - IAI47_21185 0.76 +0.4
489,913 - IAI47_21185 0.76 +0.3
489,913 - IAI47_21185 0.76 -1.5
489,913 - IAI47_21185 0.76 +1.1
489,957 + IAI47_21185 0.80 -1.2
489,957 + IAI47_21185 0.80 -0.0
489,957 + IAI47_21185 0.80 -1.1
489,958 - IAI47_21185 0.80 +0.2
489,960 + IAI47_21185 0.80 +0.1
489,960 + IAI47_21185 0.80 +0.1
489,982 + IAI47_21185 0.82 -0.2

Or see this region's nucleotide sequence