Strain Fitness in Pantoea sp. MT58 around IAI47_19325

Experiment: Ying_sugar7 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_19320 and IAI47_19325 are separated by 654 nucleotidesIAI47_19325 and IAI47_19330 are separated by 506 nucleotides IAI47_19320: IAI47_19320 - LysE family translocator, at 88,682 to 89,314 _19320 IAI47_19325: IAI47_19325 - transposase, at 89,969 to 90,253 _19325 IAI47_19330: IAI47_19330 - hypothetical protein, at 90,760 to 91,107 _19330 Position (kb) 89 90 91Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 88.994 kb on + strand, within IAI47_19320at 88.994 kb on + strand, within IAI47_19320at 89.039 kb on - strand, within IAI47_19320at 89.058 kb on + strand, within IAI47_19320at 89.061 kb on - strand, within IAI47_19320at 89.098 kb on - strand, within IAI47_19320at 89.098 kb on - strand, within IAI47_19320at 89.104 kb on - strand, within IAI47_19320at 89.150 kb on + strand, within IAI47_19320at 89.150 kb on + strand, within IAI47_19320at 89.151 kb on - strand, within IAI47_19320at 89.151 kb on - strand, within IAI47_19320at 89.154 kb on + strand, within IAI47_19320at 89.155 kb on - strand, within IAI47_19320at 89.155 kb on - strand, within IAI47_19320at 89.155 kb on - strand, within IAI47_19320at 89.156 kb on + strand, within IAI47_19320at 89.156 kb on + strand, within IAI47_19320at 89.183 kb on + strand, within IAI47_19320at 89.184 kb on - strand, within IAI47_19320at 89.190 kb on - strand, within IAI47_19320at 89.217 kb on - strand, within IAI47_19320at 89.236 kb on - strand, within IAI47_19320at 89.258 kb on + strandat 89.259 kb on - strandat 89.259 kb on - strandat 89.303 kb on - strandat 89.352 kb on - strandat 89.374 kb on + strandat 89.391 kb on - strandat 89.419 kb on - strandat 89.450 kb on + strandat 89.473 kb on - strandat 89.497 kb on + strandat 89.507 kb on - strandat 89.510 kb on + strandat 89.535 kb on - strandat 89.548 kb on + strandat 89.552 kb on - strandat 89.602 kb on + strandat 89.619 kb on - strandat 89.658 kb on - strandat 89.689 kb on + strandat 89.736 kb on - strandat 89.864 kb on + strandat 89.865 kb on - strandat 89.866 kb on + strandat 89.866 kb on + strandat 89.867 kb on - strandat 89.910 kb on + strandat 89.910 kb on + strandat 89.915 kb on - strandat 89.926 kb on - strandat 89.939 kb on + strandat 89.940 kb on - strandat 89.957 kb on + strandat 89.959 kb on + strandat 89.960 kb on - strandat 89.960 kb on - strandat 89.960 kb on - strandat 90.005 kb on + strand, within IAI47_19325at 90.005 kb on + strand, within IAI47_19325at 90.049 kb on + strand, within IAI47_19325at 90.049 kb on + strand, within IAI47_19325at 90.049 kb on + strand, within IAI47_19325at 90.049 kb on + strand, within IAI47_19325at 90.049 kb on + strand, within IAI47_19325at 90.049 kb on + strand, within IAI47_19325at 90.050 kb on - strand, within IAI47_19325at 90.050 kb on - strand, within IAI47_19325at 90.090 kb on - strand, within IAI47_19325at 90.142 kb on + strand, within IAI47_19325at 90.245 kb on + strandat 90.245 kb on + strandat 90.284 kb on + strandat 90.284 kb on + strandat 90.284 kb on + strandat 90.284 kb on + strandat 90.284 kb on + strandat 90.284 kb on + strandat 90.285 kb on - strandat 90.285 kb on - strandat 90.285 kb on - strandat 90.285 kb on - strandat 90.285 kb on - strandat 90.287 kb on + strandat 90.288 kb on - strandat 90.298 kb on - strandat 90.298 kb on - strandat 90.301 kb on + strandat 90.301 kb on + strandat 90.301 kb on + strandat 90.327 kb on + strandat 90.328 kb on - strandat 90.402 kb on + strandat 90.402 kb on + strandat 90.403 kb on - strandat 90.403 kb on - strandat 90.419 kb on + strandat 90.419 kb on + strandat 90.489 kb on + strandat 90.490 kb on - strandat 90.530 kb on - strandat 90.557 kb on + strandat 90.601 kb on + strandat 90.695 kb on + strandat 90.696 kb on - strandat 90.696 kb on - strandat 90.719 kb on + strandat 90.719 kb on + strandat 90.720 kb on - strandat 90.726 kb on + strandat 90.726 kb on + strandat 90.726 kb on + strandat 90.726 kb on + strandat 90.727 kb on - strandat 90.727 kb on - strandat 90.727 kb on - strandat 90.727 kb on - strandat 90.727 kb on - strandat 90.727 kb on - strandat 90.727 kb on - strandat 90.727 kb on - strandat 90.727 kb on - strandat 90.775 kb on - strandat 90.800 kb on + strand, within IAI47_19330at 90.800 kb on + strand, within IAI47_19330at 90.801 kb on - strand, within IAI47_19330at 90.825 kb on + strand, within IAI47_19330at 90.825 kb on + strand, within IAI47_19330at 90.826 kb on - strand, within IAI47_19330at 90.884 kb on + strand, within IAI47_19330at 90.897 kb on + strand, within IAI47_19330at 90.898 kb on - strand, within IAI47_19330at 90.951 kb on + strand, within IAI47_19330at 90.951 kb on + strand, within IAI47_19330at 90.952 kb on - strand, within IAI47_19330at 90.952 kb on - strand, within IAI47_19330at 90.968 kb on + strand, within IAI47_19330at 90.969 kb on - strand, within IAI47_19330at 90.975 kb on + strand, within IAI47_19330at 90.975 kb on + strand, within IAI47_19330at 90.976 kb on - strand, within IAI47_19330at 90.993 kb on + strand, within IAI47_19330at 90.993 kb on + strand, within IAI47_19330at 90.993 kb on + strand, within IAI47_19330at 91.006 kb on + strand, within IAI47_19330at 91.007 kb on - strand, within IAI47_19330at 91.007 kb on - strand, within IAI47_19330at 91.007 kb on - strand, within IAI47_19330at 91.007 kb on - strand, within IAI47_19330at 91.032 kb on + strand, within IAI47_19330at 91.032 kb on + strand, within IAI47_19330at 91.043 kb on + strand, within IAI47_19330at 91.052 kb on - strand, within IAI47_19330at 91.106 kb on - strandat 91.126 kb on + strandat 91.217 kb on - strandat 91.225 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3
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88,994 + IAI47_19320 0.49 +1.1
88,994 + IAI47_19320 0.49 +0.1
89,039 - IAI47_19320 0.56 +1.1
89,058 + IAI47_19320 0.59 -1.2
89,061 - IAI47_19320 0.60 -2.4
89,098 - IAI47_19320 0.66 -0.5
89,098 - IAI47_19320 0.66 +0.5
89,104 - IAI47_19320 0.67 -2.5
89,150 + IAI47_19320 0.74 -0.7
89,150 + IAI47_19320 0.74 +0.7
89,151 - IAI47_19320 0.74 +0.7
89,151 - IAI47_19320 0.74 +0.9
89,154 + IAI47_19320 0.75 -0.3
89,155 - IAI47_19320 0.75 +1.1
89,155 - IAI47_19320 0.75 +1.5
89,155 - IAI47_19320 0.75 +0.2
89,156 + IAI47_19320 0.75 -0.1
89,156 + IAI47_19320 0.75 +0.1
89,183 + IAI47_19320 0.79 +1.5
89,184 - IAI47_19320 0.79 -0.6
89,190 - IAI47_19320 0.80 -1.3
89,217 - IAI47_19320 0.85 -0.3
89,236 - IAI47_19320 0.88 -0.4
89,258 + +0.6
89,259 - +2.9
89,259 - +0.8
89,303 - -0.3
89,352 - +0.7
89,374 + -0.2
89,391 - -0.2
89,419 - -0.8
89,450 + +1.1
89,473 - -0.9
89,497 + -1.7
89,507 - -2.5
89,510 + +0.3
89,535 - -0.9
89,548 + -0.2
89,552 - +1.0
89,602 + +0.4
89,619 - +1.3
89,658 - +0.0
89,689 + +1.1
89,736 - -1.2
89,864 + -0.7
89,865 - +0.3
89,866 + -0.3
89,866 + +1.9
89,867 - +0.7
89,910 + -0.5
89,910 + -0.6
89,915 - +0.1
89,926 - -0.9
89,939 + +0.7
89,940 - +1.0
89,957 + +1.6
89,959 + +1.1
89,960 - +0.1
89,960 - +0.8
89,960 - -0.5
90,005 + IAI47_19325 0.13 -1.0
90,005 + IAI47_19325 0.13 +0.2
90,049 + IAI47_19325 0.28 +0.0
90,049 + IAI47_19325 0.28 +0.4
90,049 + IAI47_19325 0.28 -1.5
90,049 + IAI47_19325 0.28 +0.7
90,049 + IAI47_19325 0.28 -0.6
90,049 + IAI47_19325 0.28 -0.6
90,050 - IAI47_19325 0.28 +0.1
90,050 - IAI47_19325 0.28 +0.1
90,090 - IAI47_19325 0.42 -0.9
90,142 + IAI47_19325 0.61 -0.2
90,245 + +2.8
90,245 + +0.2
90,284 + +0.5
90,284 + -0.9
90,284 + -0.4
90,284 + +0.8
90,284 + -1.1
90,284 + +0.6
90,285 - -0.5
90,285 - +0.2
90,285 - +1.1
90,285 - +0.7
90,285 - +0.5
90,287 + -0.9
90,288 - +2.1
90,298 - +0.5
90,298 - +0.5
90,301 + +0.4
90,301 + -2.2
90,301 + -1.2
90,327 + +0.2
90,328 - -1.7
90,402 + -1.0
90,402 + +0.1
90,403 - -0.1
90,403 - -3.2
90,419 + -1.9
90,419 + -2.5
90,489 + +0.3
90,490 - -0.9
90,530 - +0.3
90,557 + +1.2
90,601 + +1.1
90,695 + -1.1
90,696 - -0.1
90,696 - +0.5
90,719 + -0.3
90,719 + +1.9
90,720 - -0.9
90,726 + +1.2
90,726 + -0.2
90,726 + -0.2
90,726 + +1.8
90,727 - -0.0
90,727 - -0.5
90,727 - +1.3
90,727 - +2.1
90,727 - +0.7
90,727 - +0.3
90,727 - -0.5
90,727 - -0.2
90,727 - +0.7
90,775 - -0.1
90,800 + IAI47_19330 0.11 -0.9
90,800 + IAI47_19330 0.11 +1.3
90,801 - IAI47_19330 0.12 +0.6
90,825 + IAI47_19330 0.19 +0.8
90,825 + IAI47_19330 0.19 -0.3
90,826 - IAI47_19330 0.19 +0.1
90,884 + IAI47_19330 0.36 +0.7
90,897 + IAI47_19330 0.39 +0.7
90,898 - IAI47_19330 0.40 +1.0
90,951 + IAI47_19330 0.55 -2.2
90,951 + IAI47_19330 0.55 +0.7
90,952 - IAI47_19330 0.55 -0.4
90,952 - IAI47_19330 0.55 +0.3
90,968 + IAI47_19330 0.60 -0.7
90,969 - IAI47_19330 0.60 -0.1
90,975 + IAI47_19330 0.62 +0.4
90,975 + IAI47_19330 0.62 -1.2
90,976 - IAI47_19330 0.62 -0.9
90,993 + IAI47_19330 0.67 +1.3
90,993 + IAI47_19330 0.67 -0.9
90,993 + IAI47_19330 0.67 +0.5
91,006 + IAI47_19330 0.71 +0.6
91,007 - IAI47_19330 0.71 +0.3
91,007 - IAI47_19330 0.71 -1.1
91,007 - IAI47_19330 0.71 +1.1
91,007 - IAI47_19330 0.71 -1.0
91,032 + IAI47_19330 0.78 -0.2
91,032 + IAI47_19330 0.78 +1.1
91,043 + IAI47_19330 0.81 +1.3
91,052 - IAI47_19330 0.84 -1.9
91,106 - -2.2
91,126 + +0.4
91,217 - +0.8
91,225 + +1.3

Or see this region's nucleotide sequence