Strain Fitness in Pantoea sp. MT58 around IAI47_18710

Experiment: Ying_sugar7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 3
3,990,990	+		IAI47_18705	0.22	-2.8
3,990,991	-		IAI47_18705	0.22	+0.2
3,991,023	+		IAI47_18705	0.24	-2.6
3,991,023	+		IAI47_18705	0.24	-1.4
3,991,024	-		IAI47_18705	0.25	-3.3
3,991,024	-		IAI47_18705	0.25	+0.2
3,991,024	-		IAI47_18705	0.25	-1.8
3,991,072	-		IAI47_18705	0.29	-2.1
3,991,085	+		IAI47_18705	0.30	-0.8
3,991,085	+		IAI47_18705	0.30	-1.8
3,991,085	+		IAI47_18705	0.30	-3.4
3,991,085	+		IAI47_18705	0.30	-3.3
3,991,085	+		IAI47_18705	0.30	-3.3
3,991,085	+		IAI47_18705	0.30	-1.4
3,991,085	+		IAI47_18705	0.30	-2.8
3,991,085	+		IAI47_18705	0.30	-4.0
3,991,086	-		IAI47_18705	0.30	-2.1
3,991,086	-		IAI47_18705	0.30	-2.6
3,991,089	+		IAI47_18705	0.30	-3.4
3,991,089	+		IAI47_18705	0.30	-1.4
3,991,089	+		IAI47_18705	0.30	-3.0
3,991,089	+		IAI47_18705	0.30	-3.4
3,991,090	-		IAI47_18705	0.30	-2.1
3,991,090	-		IAI47_18705	0.30	-4.6
3,991,091	-		IAI47_18705	0.30	-4.0
3,991,107	+		IAI47_18705	0.32	-2.1
3,991,107	+		IAI47_18705	0.32	-0.8
3,991,107	+		IAI47_18705	0.32	-1.8
3,991,108	-		IAI47_18705	0.32	-2.1
3,991,108	-		IAI47_18705	0.32	-2.4
3,991,165	+		IAI47_18705	0.37	-2.6
3,991,165	+		IAI47_18705	0.37	-3.3
3,991,165	+		IAI47_18705	0.37	+0.2
3,991,166	-		IAI47_18705	0.37	-3.1
3,991,308	+		IAI47_18705	0.49	-3.5
3,991,308	+		IAI47_18705	0.49	-1.4
3,991,308	+		IAI47_18705	0.49	-2.6
3,991,308	+		IAI47_18705	0.49	-1.8
3,991,309	-		IAI47_18705	0.49	-0.8
3,991,309	-		IAI47_18705	0.49	-1.8
3,991,374	+		IAI47_18705	0.55	-1.8
3,991,375	-		IAI47_18705	0.55	-3.5
3,991,415	-		IAI47_18705	0.59	-2.1
3,991,481	+		IAI47_18705	0.64	-1.2
3,991,514	+		IAI47_18705	0.67	-3.4
3,991,521	+		IAI47_18705	0.68	-1.4
3,991,522	-		IAI47_18705	0.68	-3.0
3,991,522	-		IAI47_18705	0.68	-1.8
3,991,522	-		IAI47_18705	0.68	-2.4
3,991,522	-		IAI47_18705	0.68	-0.8
3,991,558	+		IAI47_18705	0.71	-1.8
3,991,558	+		IAI47_18705	0.71	-3.5
3,991,558	+		IAI47_18705	0.71	-3.4
3,991,558	+		IAI47_18705	0.71	-3.5
3,991,558	+		IAI47_18705	0.71	-3.0
3,991,558	+		IAI47_18705	0.71	-0.8
3,991,558	+		IAI47_18705	0.71	-4.1
3,991,558	+		IAI47_18705	0.71	-3.0
3,991,558	+		IAI47_18705	0.71	-1.8
3,991,559	-		IAI47_18705	0.71	-2.8
3,991,559	-		IAI47_18705	0.71	-1.8
3,991,594	+		IAI47_18705	0.74	-3.5
3,991,595	-		IAI47_18705	0.74	-1.8
3,991,620	-		IAI47_18705	0.76	-3.4
3,991,620	-		IAI47_18705	0.76	-3.3
3,991,639	-		IAI47_18705	0.78	-3.1
3,991,665	+		IAI47_18705	0.80	-3.3
3,991,666	-		IAI47_18705	0.80	-3.3
3,991,666	-		IAI47_18705	0.80	-2.8
3,991,666	-		IAI47_18705	0.80	-1.8
3,991,690	+		IAI47_18705	0.83	-0.4
3,991,690	+		IAI47_18705	0.83	-4.1
3,991,690	+		IAI47_18705	0.83	-1.4
3,991,690	+		IAI47_18705	0.83	-2.6
3,991,691	-		IAI47_18705	0.83	-4.3
3,991,691	-		IAI47_18705	0.83	-3.9
3,991,691	-		IAI47_18705	0.83	-3.3
3,991,722	+		IAI47_18705	0.85	+0.2
3,991,723	-		IAI47_18705	0.85	-1.8
3,991,741	+		IAI47_18705	0.87	-2.1
3,991,741	+		IAI47_18705	0.87	-0.4
3,991,741	+		IAI47_18705	0.87	-1.2
3,991,742	-		IAI47_18705	0.87	-2.1
3,991,742	-		IAI47_18705	0.87	-1.4
3,991,742	-		IAI47_18705	0.87	-2.8
3,991,742	-		IAI47_18705	0.87	-4.1
3,991,809	+				-1.1
3,991,809	+				+2.2
3,991,810	-				-0.8
3,991,810	-				-2.1
3,991,881	+				+0.5
3,991,881	+				+1.2
3,991,888	+				+0.2
3,991,888	+				-0.6
3,991,888	+				+1.1
3,991,888	+				-1.4
3,991,888	+				+1.2
3,991,888	+				-1.5
3,991,888	+				+0.5
3,991,889	-				+0.2
3,991,902	+				+0.1
3,991,902	+				+0.5
3,991,902	+				-0.5
3,991,903	-				+1.0
3,991,965	+				-0.8
3,991,965	+				-1.0
3,991,966	-				+0.8
3,992,058	+		IAI47_18710	0.19	-0.5
3,992,058	+		IAI47_18710	0.19	+0.5
3,992,058	+		IAI47_18710	0.19	+1.1
3,992,058	+		IAI47_18710	0.19	+0.4
3,992,059	-		IAI47_18710	0.19	-0.7
3,992,059	-		IAI47_18710	0.19	-0.4
3,992,111	+		IAI47_18710	0.29	-0.4
3,992,111	+		IAI47_18710	0.29	+0.8
3,992,112	-		IAI47_18710	0.29	+0.8
3,992,112	-		IAI47_18710	0.29	+0.9
3,992,112	-		IAI47_18710	0.29	-0.0
3,992,112	-		IAI47_18710	0.29	+0.7
3,992,112	-		IAI47_18710	0.29	+0.7
3,992,120	-		IAI47_18710	0.30	+0.5
3,992,120	-		IAI47_18710	0.30	+0.5
3,992,120	-		IAI47_18710	0.30	+0.2
3,992,120	-		IAI47_18710	0.30	+2.1
3,992,123	+		IAI47_18710	0.31	+0.2
3,992,123	+		IAI47_18710	0.31	-0.1
3,992,123	+		IAI47_18710	0.31	+2.1
3,992,124	-		IAI47_18710	0.31	-0.6
3,992,124	-		IAI47_18710	0.31	-2.8
3,992,124	-		IAI47_18710	0.31	+1.4
3,992,124	-		IAI47_18710	0.31	+1.2
3,992,124	-		IAI47_18710	0.31	+1.3
3,992,131	-		IAI47_18710	0.32	-2.1
3,992,150	-		IAI47_18710	0.36	+0.7
3,992,192	+		IAI47_18710	0.43	+0.3
3,992,222	+		IAI47_18710	0.49	+0.6
3,992,222	+		IAI47_18710	0.49	+0.6
3,992,223	-		IAI47_18710	0.49	+1.5
3,992,223	-		IAI47_18710	0.49	-2.6
3,992,282	+		IAI47_18710	0.60	+1.1
3,992,291	-		IAI47_18710	0.62	-0.2
3,992,363	-		IAI47_18710	0.75	-0.3
3,992,363	-		IAI47_18710	0.75	-1.4
3,992,363	-		IAI47_18710	0.75	+0.5
3,992,389	+		IAI47_18710	0.79	-1.3
3,992,389	+		IAI47_18710	0.79	+0.4
3,992,390	-		IAI47_18710	0.80	+1.2
3,992,390	-		IAI47_18710	0.80	+0.2
3,992,405	+		IAI47_18710	0.82	-0.3
3,992,406	-		IAI47_18710	0.83	+0.6
3,992,467	+				-0.0
3,992,468	-				-0.8
3,992,468	-				-1.8
3,992,483	-				+0.2
3,992,495	-				-1.6
3,992,551	+				-0.8
3,992,551	+				-1.4
3,992,551	+				+0.5
3,992,552	-				+0.8
3,992,552	-				-0.0
3,992,552	-				-0.4
3,992,569	+				+0.7
3,992,569	+				-3.1
3,992,569	+				-0.5
3,992,569	+				+0.9
3,992,569	+				+0.2
3,992,570	-				-0.5
3,992,570	-				+1.8
3,992,570	-				+1.5
3,992,646	-		IAI47_18715	0.12	-1.4
3,992,680	+		IAI47_18715	0.21	-0.8
3,992,680	+		IAI47_18715	0.21	+2.4
3,992,832	-		IAI47_18715	0.63	+0.0
3,992,951	+				-1.4
3,993,025	+				-0.9
3,993,025	+				-0.2
3,993,025	+				-1.8
3,993,026	-				-0.4
3,993,026	-				+0.3
3,993,058	+				-1.9
3,993,070	+				+1.1
3,993,070	+				+1.3
3,993,070	+				-0.8
3,993,070	+				+0.6
3,993,071	-				-1.7
3,993,071	-				-0.0
3,993,086	+		IAI47_18720	0.11	-1.2
3,993,086	+		IAI47_18720	0.11	-0.4
3,993,087	-		IAI47_18720	0.11	+0.2
3,993,134	+		IAI47_18720	0.16	-0.5
3,993,134	+		IAI47_18720	0.16	-1.3
3,993,135	-		IAI47_18720	0.16	+0.7
3,993,135	-		IAI47_18720	0.16	-2.8
3,993,135	-		IAI47_18720	0.16	-0.5
3,993,135	-		IAI47_18720	0.16	+0.5
3,993,135	-		IAI47_18720	0.16	+1.6
3,993,135	-		IAI47_18720	0.16	+2.6
3,993,187	+		IAI47_18720	0.22	-0.5
3,993,187	+		IAI47_18720	0.22	+1.3
3,993,187	+		IAI47_18720	0.22	+1.8
3,993,188	-		IAI47_18720	0.22	+0.2
3,993,188	-		IAI47_18720	0.22	+0.2
3,993,203	+		IAI47_18720	0.23	+0.6
3,993,203	+		IAI47_18720	0.23	+0.7
3,993,203	+		IAI47_18720	0.23	-0.8
3,993,204	-		IAI47_18720	0.24	+0.2
3,993,204	-		IAI47_18720	0.24	-0.3
3,993,204	-		IAI47_18720	0.24	-0.3
3,993,204	-		IAI47_18720	0.24	+0.3
3,993,215	+		IAI47_18720	0.25	+1.7
3,993,215	+		IAI47_18720	0.25	-0.4
3,993,216	-		IAI47_18720	0.25	+1.5
3,993,216	-		IAI47_18720	0.25	-0.5
3,993,216	-		IAI47_18720	0.25	-0.3
3,993,258	+		IAI47_18720	0.29	-1.6
3,993,259	-		IAI47_18720	0.29	+0.8
3,993,259	-		IAI47_18720	0.29	-1.2
3,993,269	+		IAI47_18720	0.30	+2.2
3,993,299	+		IAI47_18720	0.33	+1.8
3,993,299	+		IAI47_18720	0.33	+1.3
3,993,299	+		IAI47_18720	0.33	+0.4
3,993,300	-		IAI47_18720	0.33	-1.1
3,993,300	-		IAI47_18720	0.33	-0.4
3,993,303	+		IAI47_18720	0.34	+1.6
3,993,304	-		IAI47_18720	0.34	-1.0
3,993,374	+		IAI47_18720	0.41	+0.2
3,993,375	-		IAI47_18720	0.41	+2.8
3,993,375	-		IAI47_18720	0.41	+1.9
3,993,380	+		IAI47_18720	0.42	-0.3
3,993,380	+		IAI47_18720	0.42	-2.1
3,993,381	-		IAI47_18720	0.42	+0.2
3,993,381	-		IAI47_18720	0.42	+0.1
3,993,381	-		IAI47_18720	0.42	-0.8
3,993,381	-		IAI47_18720	0.42	-2.0
3,993,399	+		IAI47_18720	0.44	-0.8
3,993,399	+		IAI47_18720	0.44	-0.8
3,993,400	-		IAI47_18720	0.44	-1.6
3,993,400	-		IAI47_18720	0.44	-1.4
3,993,411	+		IAI47_18720	0.45	+0.2
3,993,411	+		IAI47_18720	0.45	-0.8
3,993,412	-		IAI47_18720	0.45	-1.0
3,993,464	+		IAI47_18720	0.50	+1.4
3,993,476	+		IAI47_18720	0.52	-0.1
3,993,476	+		IAI47_18720	0.52	-0.3
3,993,476	+		IAI47_18720	0.52	-0.9
3,993,477	-		IAI47_18720	0.52	-0.3
3,993,477	-		IAI47_18720	0.52	+0.5
3,993,477	-		IAI47_18720	0.52	+2.1
3,993,478	+		IAI47_18720	0.52	+0.9
3,993,479	-		IAI47_18720	0.52	-1.6
3,993,486	+		IAI47_18720	0.53	+0.6
3,993,486	+		IAI47_18720	0.53	+3.1
3,993,487	-		IAI47_18720	0.53	-2.6
3,993,487	-		IAI47_18720	0.53	+0.2
3,993,487	-		IAI47_18720	0.53	+0.2