Strain Fitness in Pantoea sp. MT58 around IAI47_18520

Experiment: Ying_sugar7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 3
3,938,626	+				-0.1
3,938,626	+				+0.4
3,938,626	+				-1.4
3,938,626	+				-2.3
3,938,626	+				+0.9
3,938,626	+				-0.4
3,938,626	+				-0.4
3,938,626	+				-1.4
3,938,626	+				+1.5
3,938,626	+				-0.2
3,938,626	+				+0.3
3,938,626	+				+0.3
3,938,626	+				+2.6
3,938,627	-				+0.1
3,938,627	-				-0.5
3,938,627	-				+1.3
3,938,627	-				+2.0
3,938,627	-				-1.5
3,938,627	-				+0.8
3,938,627	-				+0.7
3,938,627	-				+1.2
3,938,627	-				+0.2
3,938,627	-				+1.3
3,938,627	-				-0.6
3,938,627	-				+0.6
3,938,627	-				-0.7
3,938,664	-		IAI47_18515	0.12	-0.7
3,938,664	-		IAI47_18515	0.12	+3.5
3,938,689	-		IAI47_18515	0.14	+0.2
3,938,689	-		IAI47_18515	0.14	-0.5
3,938,694	+		IAI47_18515	0.14	+0.2
3,938,694	+		IAI47_18515	0.14	+0.2
3,938,694	+		IAI47_18515	0.14	-0.8
3,938,695	-		IAI47_18515	0.14	-0.6
3,938,695	-		IAI47_18515	0.14	-2.1
3,938,695	-		IAI47_18515	0.14	-2.1
3,938,695	-		IAI47_18515	0.14	+0.0
3,938,763	+		IAI47_18515	0.21	+1.8
3,938,764	-		IAI47_18515	0.21	+1.8
3,938,764	-		IAI47_18515	0.21	-1.4
3,938,764	-		IAI47_18515	0.21	-0.5
3,938,764	-		IAI47_18515	0.21	-0.9
3,938,764	-		IAI47_18515	0.21	-1.1
3,938,764	-		IAI47_18515	0.21	+1.4
3,938,764	-		IAI47_18515	0.21	+0.9
3,938,770	+		IAI47_18515	0.22	+0.5
3,938,770	+		IAI47_18515	0.22	+0.5
3,938,770	+		IAI47_18515	0.22	-0.6
3,938,890	+		IAI47_18515	0.33	+0.6
3,938,891	-		IAI47_18515	0.33	+2.2
3,938,891	-		IAI47_18515	0.33	+0.2
3,938,891	-		IAI47_18515	0.33	+1.1
3,938,960	-		IAI47_18515	0.40	-0.4
3,939,004	+		IAI47_18515	0.44	+4.0
3,939,004	+		IAI47_18515	0.44	+1.2
3,939,004	+		IAI47_18515	0.44	-0.8
3,939,005	-		IAI47_18515	0.44	+1.6
3,939,005	-		IAI47_18515	0.44	+0.9
3,939,005	-		IAI47_18515	0.44	-0.3
3,939,005	-		IAI47_18515	0.44	-1.0
3,939,005	-		IAI47_18515	0.44	-0.6
3,939,008	+		IAI47_18515	0.44	-3.0
3,939,009	-		IAI47_18515	0.44	-0.4
3,939,026	+		IAI47_18515	0.46	+0.9
3,939,026	+		IAI47_18515	0.46	-0.8
3,939,027	-		IAI47_18515	0.46	-0.1
3,939,027	-		IAI47_18515	0.46	-0.8
3,939,067	-		IAI47_18515	0.50	-0.7
3,939,067	-		IAI47_18515	0.50	+0.1
3,939,075	+		IAI47_18515	0.51	-1.4
3,939,075	+		IAI47_18515	0.51	-0.0
3,939,075	+		IAI47_18515	0.51	+0.2
3,939,075	+		IAI47_18515	0.51	-0.5
3,939,075	+		IAI47_18515	0.51	+0.5
3,939,076	-		IAI47_18515	0.51	+0.5
3,939,076	-		IAI47_18515	0.51	-0.6
3,939,076	-		IAI47_18515	0.51	-0.8
3,939,076	-		IAI47_18515	0.51	-2.1
3,939,076	-		IAI47_18515	0.51	+1.0
3,939,086	+		IAI47_18515	0.52	-0.2
3,939,087	-		IAI47_18515	0.52	-0.8
3,939,091	+		IAI47_18515	0.52	-1.8
3,939,091	+		IAI47_18515	0.52	-1.8
3,939,092	-		IAI47_18515	0.52	+0.1
3,939,142	+		IAI47_18515	0.57	-1.0
3,939,142	+		IAI47_18515	0.57	+2.2
3,939,142	+		IAI47_18515	0.57	+0.4
3,939,142	+		IAI47_18515	0.57	+0.2
3,939,163	+		IAI47_18515	0.59	-0.8
3,939,163	+		IAI47_18515	0.59	-0.4
3,939,172	+		IAI47_18515	0.60	-3.1
3,939,184	+		IAI47_18515	0.61	-1.1
3,939,184	+		IAI47_18515	0.61	-1.8
3,939,184	+		IAI47_18515	0.61	-0.4
3,939,184	+		IAI47_18515	0.61	+1.2
3,939,184	+		IAI47_18515	0.61	-1.7
3,939,185	-		IAI47_18515	0.61	-1.4
3,939,209	-		IAI47_18515	0.63	-0.5
3,939,240	+		IAI47_18515	0.66	+0.2
3,939,241	-		IAI47_18515	0.66	-1.0
3,939,241	-		IAI47_18515	0.66	-0.8
3,939,241	-		IAI47_18515	0.66	-0.4
3,939,306	+		IAI47_18515	0.73	-2.1
3,939,307	-		IAI47_18515	0.73	-1.4
3,939,307	-		IAI47_18515	0.73	+0.9
3,939,347	+		IAI47_18515	0.77	-0.8
3,939,347	+		IAI47_18515	0.77	+2.0
3,939,347	+		IAI47_18515	0.77	-0.8
3,939,347	+		IAI47_18515	0.77	-0.3
3,939,348	-		IAI47_18515	0.77	+1.2
3,939,348	-		IAI47_18515	0.77	-0.8
3,939,348	-		IAI47_18515	0.77	+1.5
3,939,396	+		IAI47_18515	0.81	-0.4
3,939,396	+		IAI47_18515	0.81	+0.2
3,939,396	+		IAI47_18515	0.81	+0.2
3,939,396	+		IAI47_18515	0.81	-1.8
3,939,396	+		IAI47_18515	0.81	-2.5
3,939,396	+		IAI47_18515	0.81	-1.4
3,939,397	-		IAI47_18515	0.81	+1.0
3,939,397	-		IAI47_18515	0.81	-0.6
3,939,397	-		IAI47_18515	0.81	-1.4
3,939,397	-		IAI47_18515	0.81	+1.2
3,939,397	-		IAI47_18515	0.81	-0.4
3,939,399	+		IAI47_18515	0.82	-2.6
3,939,399	+		IAI47_18515	0.82	-0.8
3,939,399	+		IAI47_18515	0.82	-0.6
3,939,399	+		IAI47_18515	0.82	-2.3
3,939,399	+		IAI47_18515	0.82	+0.7
3,939,400	-		IAI47_18515	0.82	-0.2
3,939,400	-		IAI47_18515	0.82	-1.5
3,939,400	-		IAI47_18515	0.82	+0.7
3,939,400	-		IAI47_18515	0.82	+2.4
3,939,537	-				-2.0
3,939,559	+				+0.2
3,939,601	+				-0.4
3,939,602	-				-1.8
3,939,602	-				-0.2
3,939,602	-				+0.3
3,939,602	-				+1.2
3,939,602	-				+0.5
3,939,608	+				-1.0
3,939,609	-				-1.2
3,939,628	+				+0.2
3,939,628	+				+1.2
3,939,664	+				-2.6
3,939,676	+				+0.8
3,939,677	-				-1.0
3,939,777	+		IAI47_18520	0.14	-1.3
3,939,778	-		IAI47_18520	0.14	-0.5
3,939,778	-		IAI47_18520	0.14	+0.9
3,939,825	-		IAI47_18520	0.19	-2.1
3,939,916	+		IAI47_18520	0.27	-1.0
3,939,916	+		IAI47_18520	0.27	-0.9
3,939,917	-		IAI47_18520	0.27	+0.2
3,939,930	+		IAI47_18520	0.28	+3.3
3,939,930	+		IAI47_18520	0.28	-1.8
3,939,930	+		IAI47_18520	0.28	+0.8
3,939,930	+		IAI47_18520	0.28	+0.3
3,939,930	+		IAI47_18520	0.28	-2.4
3,939,930	+		IAI47_18520	0.28	-0.5
3,939,930	+		IAI47_18520	0.28	-0.4
3,939,930	+		IAI47_18520	0.28	-0.3
3,939,931	-		IAI47_18520	0.29	-1.0
3,939,931	-		IAI47_18520	0.29	+0.2
3,939,931	-		IAI47_18520	0.29	+0.2
3,939,931	-		IAI47_18520	0.29	+0.2
3,939,931	-		IAI47_18520	0.29	-0.5
3,939,931	-		IAI47_18520	0.29	+1.8
3,939,931	-		IAI47_18520	0.29	+0.4
3,939,931	-		IAI47_18520	0.29	+0.2
3,939,934	+		IAI47_18520	0.29	-0.6
3,939,934	+		IAI47_18520	0.29	-0.4
3,939,934	+		IAI47_18520	0.29	-0.7
3,939,934	+		IAI47_18520	0.29	+0.5
3,939,934	+		IAI47_18520	0.29	-1.0
3,939,934	+		IAI47_18520	0.29	-0.1
3,939,934	+		IAI47_18520	0.29	+0.1
3,939,934	+		IAI47_18520	0.29	+0.1
3,939,934	+		IAI47_18520	0.29	+0.1
3,939,934	+		IAI47_18520	0.29	+0.5
3,939,934	+		IAI47_18520	0.29	-1.4
3,939,934	+		IAI47_18520	0.29	+2.8
3,939,935	-		IAI47_18520	0.29	+0.2
3,939,935	-		IAI47_18520	0.29	-0.8
3,939,935	-		IAI47_18520	0.29	-0.8
3,939,935	-		IAI47_18520	0.29	+0.9
3,939,935	-		IAI47_18520	0.29	+0.4
3,939,935	-		IAI47_18520	0.29	-0.8
3,939,935	-		IAI47_18520	0.29	+1.8
3,939,946	+		IAI47_18520	0.30	+0.4
3,939,946	+		IAI47_18520	0.30	-0.2
3,939,946	+		IAI47_18520	0.30	+2.5
3,939,947	-		IAI47_18520	0.30	+2.1
3,939,947	-		IAI47_18520	0.30	-1.7
3,939,947	-		IAI47_18520	0.30	+0.1
3,939,948	+		IAI47_18520	0.30	-0.6
3,939,949	-		IAI47_18520	0.30	-0.0
3,939,967	+		IAI47_18520	0.32	+0.0
3,939,967	+		IAI47_18520	0.32	-0.2
3,939,967	+		IAI47_18520	0.32	+0.2
3,939,968	-		IAI47_18520	0.32	+0.5
3,939,968	-		IAI47_18520	0.32	+0.8
3,939,968	-		IAI47_18520	0.32	-0.5
3,939,968	-		IAI47_18520	0.32	+2.0
3,939,991	+		IAI47_18520	0.34	-1.1
3,940,036	+		IAI47_18520	0.38	-0.2
3,940,036	+		IAI47_18520	0.38	-0.8
3,940,036	+		IAI47_18520	0.38	-0.8
3,940,037	-		IAI47_18520	0.38	-0.7
3,940,037	-		IAI47_18520	0.38	-2.5
3,940,037	-		IAI47_18520	0.38	-0.5
3,940,057	+		IAI47_18520	0.40	-0.9
3,940,057	+		IAI47_18520	0.40	+1.8
3,940,058	-		IAI47_18520	0.40	-0.8
3,940,076	-		IAI47_18520	0.42	-0.2
3,940,076	-		IAI47_18520	0.42	+0.3
3,940,111	+		IAI47_18520	0.45	-2.8
3,940,112	-		IAI47_18520	0.45	+2.6
3,940,120	+		IAI47_18520	0.46	+0.4
3,940,120	+		IAI47_18520	0.46	-0.4
3,940,120	+		IAI47_18520	0.46	-0.5
3,940,120	+		IAI47_18520	0.46	-1.2
3,940,121	-		IAI47_18520	0.46	+0.8
3,940,121	-		IAI47_18520	0.46	+1.1
3,940,121	-		IAI47_18520	0.46	-0.6
3,940,121	-		IAI47_18520	0.46	-0.3
3,940,121	-		IAI47_18520	0.46	+1.5
3,940,122	+		IAI47_18520	0.46	-0.8
3,940,122	+		IAI47_18520	0.46	-3.1
3,940,122	+		IAI47_18520	0.46	+1.2
3,940,123	-		IAI47_18520	0.46	-0.4
3,940,123	-		IAI47_18520	0.46	+2.8
3,940,123	-		IAI47_18520	0.46	+0.8
3,940,123	-		IAI47_18520	0.46	-0.8
3,940,123	-		IAI47_18520	0.46	+1.3
3,940,123	-		IAI47_18520	0.46	-1.8
3,940,185	+		IAI47_18520	0.52	+3.0
3,940,186	-		IAI47_18520	0.52	-0.3
3,940,186	-		IAI47_18520	0.52	+0.7
3,940,186	-		IAI47_18520	0.52	-1.0
3,940,186	-		IAI47_18520	0.52	+1.0
3,940,186	-		IAI47_18520	0.52	-0.5
3,940,258	+		IAI47_18520	0.59	-0.2
3,940,258	+		IAI47_18520	0.59	-1.2
3,940,258	+		IAI47_18520	0.59	+1.1
3,940,258	+		IAI47_18520	0.59	+0.9
3,940,259	-		IAI47_18520	0.59	+1.5
3,940,259	-		IAI47_18520	0.59	-0.2
3,940,259	-		IAI47_18520	0.59	-0.5
3,940,259	-		IAI47_18520	0.59	-0.2
3,940,259	-		IAI47_18520	0.59	-1.3
3,940,261	+		IAI47_18520	0.59	+0.8
3,940,261	+		IAI47_18520	0.59	+0.9
3,940,261	+		IAI47_18520	0.59	+0.2
3,940,262	-		IAI47_18520	0.59	+0.0
3,940,262	-		IAI47_18520	0.59	-0.3
3,940,262	-		IAI47_18520	0.59	-2.0
3,940,305	+		IAI47_18520	0.63	+0.2
3,940,305	+		IAI47_18520	0.63	-1.8
3,940,305	+		IAI47_18520	0.63	-0.8
3,940,305	+		IAI47_18520	0.63	-0.8
3,940,305	+		IAI47_18520	0.63	+0.8
3,940,306	-		IAI47_18520	0.63	-0.1
3,940,306	-		IAI47_18520	0.63	+1.1
3,940,306	-		IAI47_18520	0.63	+0.4
3,940,324	+		IAI47_18520	0.65	+0.2
3,940,325	-		IAI47_18520	0.65	+0.1
3,940,345	+		IAI47_18520	0.67	-1.4
3,940,346	-		IAI47_18520	0.67	-0.4
3,940,365	+		IAI47_18520	0.69	-0.2
3,940,366	-		IAI47_18520	0.69	-1.5
3,940,366	-		IAI47_18520	0.69	-1.1
3,940,436	-		IAI47_18520	0.75	-3.5
3,940,436	-		IAI47_18520	0.75	+0.8
3,940,491	+		IAI47_18520	0.80	-0.7
3,940,491	+		IAI47_18520	0.80	+0.4
3,940,491	+		IAI47_18520	0.80	+1.4
3,940,492	-		IAI47_18520	0.80	-0.8
3,940,492	-		IAI47_18520	0.80	-1.1
3,940,492	-		IAI47_18520	0.80	-1.7
3,940,492	-		IAI47_18520	0.80	-0.5
3,940,492	-		IAI47_18520	0.80	-0.1
3,940,512	+		IAI47_18520	0.82	+0.2
3,940,513	-		IAI47_18520	0.82	+0.6
3,940,513	-		IAI47_18520	0.82	-0.6
3,940,515	+		IAI47_18520	0.83	-0.8
3,940,515	+		IAI47_18520	0.83	-1.4
3,940,515	+		IAI47_18520	0.83	-2.1
3,940,515	+		IAI47_18520	0.83	-0.1
3,940,515	+		IAI47_18520	0.83	+0.2
3,940,515	+		IAI47_18520	0.83	-2.4
3,940,515	+		IAI47_18520	0.83	-0.6
3,940,515	+		IAI47_18520	0.83	+0.9
3,940,515	+		IAI47_18520	0.83	-0.1
3,940,515	+		IAI47_18520	0.83	-0.1
3,940,516	-		IAI47_18520	0.83	+0.6
3,940,516	-		IAI47_18520	0.83	-0.8
3,940,516	-		IAI47_18520	0.83	+1.0
3,940,516	-		IAI47_18520	0.83	-1.5
3,940,516	-		IAI47_18520	0.83	+1.2
3,940,534	+		IAI47_18520	0.84	+0.3
3,940,534	+		IAI47_18520	0.84	+1.4
3,940,535	-		IAI47_18520	0.84	+0.5
3,940,535	-		IAI47_18520	0.84	-0.4
3,940,535	-		IAI47_18520	0.84	-2.1
3,940,544	-		IAI47_18520	0.85	+0.2
3,940,544	-		IAI47_18520	0.85	+0.9
3,940,597	+				+1.7
3,940,597	+				-1.7
3,940,597	+				+2.4
3,940,598	-				-1.4
3,940,606	+				-3.0
3,940,606	+				+0.6
3,940,606	+				+2.9
3,940,607	-				-2.6
3,940,607	-				+0.6
3,940,607	-				-0.2
3,940,612	+				+1.0
3,940,619	+				-1.4
3,940,619	+				-0.4
3,940,619	+				-0.5
3,940,619	+				+2.2
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