Strain Fitness in Pantoea sp. MT58 around IAI47_18315

Experiment: Ying_sugar7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 3
3,897,305	+		IAI47_18310	0.64	+0.5
3,897,305	+		IAI47_18310	0.64	-1.8
3,897,305	+		IAI47_18310	0.64	-0.0
3,897,305	+		IAI47_18310	0.64	+0.8
3,897,305	+		IAI47_18310	0.64	-0.0
3,897,305	+		IAI47_18310	0.64	+2.1
3,897,306	-		IAI47_18310	0.64	-0.8
3,897,306	-		IAI47_18310	0.64	+0.6
3,897,306	-		IAI47_18310	0.64	+1.6
3,897,308	+		IAI47_18310	0.64	+0.9
3,897,308	+		IAI47_18310	0.64	-0.2
3,897,308	+		IAI47_18310	0.64	+2.1
3,897,308	+		IAI47_18310	0.64	+0.9
3,897,308	+		IAI47_18310	0.64	-0.4
3,897,308	+		IAI47_18310	0.64	+1.2
3,897,308	+		IAI47_18310	0.64	-2.4
3,897,308	+		IAI47_18310	0.64	+0.8
3,897,309	-		IAI47_18310	0.64	+1.7
3,897,309	-		IAI47_18310	0.64	+0.4
3,897,309	-		IAI47_18310	0.64	+1.7
3,897,309	-		IAI47_18310	0.64	+0.2
3,897,309	-		IAI47_18310	0.64	+0.6
3,897,309	-		IAI47_18310	0.64	-0.8
3,897,310	-		IAI47_18310	0.64	+2.0
3,897,310	-		IAI47_18310	0.64	-0.1
3,897,397	+		IAI47_18310	0.68	+0.9
3,897,397	+		IAI47_18310	0.68	+1.3
3,897,397	+		IAI47_18310	0.68	+0.2
3,897,397	+		IAI47_18310	0.68	-0.4
3,897,397	+		IAI47_18310	0.68	-0.4
3,897,397	+		IAI47_18310	0.68	+0.6
3,897,397	+		IAI47_18310	0.68	+0.9
3,897,398	-		IAI47_18310	0.68	-0.4
3,897,398	-		IAI47_18310	0.68	-2.0
3,897,398	-		IAI47_18310	0.68	-1.0
3,897,398	-		IAI47_18310	0.68	-1.7
3,897,398	-		IAI47_18310	0.68	+1.2
3,897,439	+		IAI47_18310	0.70	+0.7
3,897,439	+		IAI47_18310	0.70	+0.9
3,897,440	-		IAI47_18310	0.70	+0.5
3,897,507	+		IAI47_18310	0.73	-1.8
3,897,553	+		IAI47_18310	0.75	+0.2
3,897,553	+		IAI47_18310	0.75	-0.2
3,897,553	+		IAI47_18310	0.75	+0.6
3,897,553	+		IAI47_18310	0.75	+1.8
3,897,554	-		IAI47_18310	0.75	+1.2
3,897,625	+		IAI47_18310	0.78	+0.6
3,897,625	+		IAI47_18310	0.78	+0.5
3,897,625	+		IAI47_18310	0.78	-1.0
3,897,626	-		IAI47_18310	0.78	+2.2
3,897,626	-		IAI47_18310	0.78	+0.5
3,897,626	-		IAI47_18310	0.78	-0.3
3,897,626	-		IAI47_18310	0.78	-0.7
3,897,626	-		IAI47_18310	0.78	-0.2
3,897,653	+		IAI47_18310	0.79	+0.0
3,897,653	+		IAI47_18310	0.79	+0.2
3,897,653	+		IAI47_18310	0.79	-0.1
3,897,653	+		IAI47_18310	0.79	+0.0
3,897,654	-		IAI47_18310	0.79	+0.6
3,897,654	-		IAI47_18310	0.79	+1.2
3,897,716	+		IAI47_18310	0.82	-0.8
3,897,716	+		IAI47_18310	0.82	+1.5
3,897,717	-		IAI47_18310	0.82	+0.8
3,897,717	-		IAI47_18310	0.82	+0.3
3,897,734	+		IAI47_18310	0.83	+0.9
3,897,757	+		IAI47_18310	0.84	-0.5
3,897,757	+		IAI47_18310	0.84	-1.6
3,897,758	-		IAI47_18310	0.84	-0.8
3,897,758	-		IAI47_18310	0.84	-1.8
3,897,758	-		IAI47_18310	0.84	+1.4
3,897,758	-		IAI47_18310	0.84	-0.3
3,897,758	-		IAI47_18310	0.84	-0.0
3,897,758	-		IAI47_18310	0.84	+1.3
3,897,758	-		IAI47_18310	0.84	+0.2
3,897,925	+				-1.3
3,897,925	+				+1.2
3,897,925	+				+1.2
3,897,925	+				-0.3
3,897,925	+				+0.8
3,897,926	-				+2.2
3,897,926	-				+0.4
3,897,926	-				-0.5
3,898,048	+				-0.8
3,898,049	-				+0.2
3,898,049	-				-1.0
3,898,106	+				+4.2
3,898,106	+				+1.5
3,898,107	-				+0.3
3,898,107	-				+0.8
3,898,107	-				+0.8
3,898,107	-				+0.5
3,898,118	+				-0.3
3,898,118	+				-0.8
3,898,118	+				+1.5
3,898,118	+				-1.0
3,898,118	+				+0.9
3,898,119	-				+1.4
3,898,119	-				+0.6
3,898,119	-				+1.1
3,898,140	+				+1.0
3,898,140	+				-0.4
3,898,140	+				-0.8
3,898,141	-				+0.2
3,898,141	-				-0.0
3,898,141	-				+0.3
3,898,157	+				-0.6
3,898,158	-				+0.6
3,898,158	-				-0.5
3,898,196	+				+1.6
3,898,204	+				-0.0
3,898,206	+				+2.1
3,898,207	-				-0.2
3,898,217	+				-0.6
3,898,217	+				-3.0
3,898,222	+				-2.3
3,898,222	+				+1.8
3,898,222	+				-0.3
3,898,222	+				-1.1
3,898,222	+				+2.0
3,898,222	+				+0.4
3,898,222	+				+2.2
3,898,222	+				+0.5
3,898,222	+				+1.2
3,898,222	+				-0.3
3,898,222	+				+0.2
3,898,222	+				-0.2
3,898,222	+				+0.2
3,898,222	+				-1.2
3,898,222	+				+1.0
3,898,222	+				-0.3
3,898,222	+				-2.6
3,898,222	+				-1.1
3,898,222	+				-0.0
3,898,222	+				+0.5
3,898,223	-				+1.6
3,898,223	-				-1.0
3,898,223	-				+0.2
3,898,223	-				-0.3
3,898,223	-				+1.6
3,898,223	-				-0.0
3,898,223	-				+1.2
3,898,223	-				-0.9
3,898,223	-				-1.4
3,898,240	+				-0.4
3,898,240	+				-0.1
3,898,240	+				+0.8
3,898,240	+				-1.7
3,898,240	+				-0.1
3,898,240	+				-1.0
3,898,240	+				-0.9
3,898,240	+				+1.0
3,898,240	+				-0.3
3,898,240	+				+0.8
3,898,240	+				-0.5
3,898,240	+				-1.1
3,898,240	+				+0.0
3,898,241	-				-1.2
3,898,241	-				+1.1
3,898,241	-				+0.4
3,898,241	-				+0.3
3,898,241	-				+1.2
3,898,241	-				-1.0
3,898,314	-				-3.0
3,898,421	+		IAI47_18315	0.16	-2.4
3,898,422	-		IAI47_18315	0.17	-1.4
3,898,422	-		IAI47_18315	0.17	-3.0
3,898,422	-		IAI47_18315	0.17	-2.1
3,898,436	-		IAI47_18315	0.18	-3.4
3,898,442	+		IAI47_18315	0.19	-2.6
3,898,443	-		IAI47_18315	0.19	-2.0
3,898,443	-		IAI47_18315	0.19	-3.5
3,898,457	+		IAI47_18315	0.20	-2.6
3,898,458	-		IAI47_18315	0.20	-0.8
3,898,731	+		IAI47_18315	0.50	-0.8
3,898,731	+		IAI47_18315	0.50	-2.1
3,898,732	-		IAI47_18315	0.50	-2.6
3,898,750	-		IAI47_18315	0.52	-4.0
3,898,750	-		IAI47_18315	0.52	-2.1
3,898,750	-		IAI47_18315	0.52	-2.0
3,898,835	-		IAI47_18315	0.61	-2.8
3,898,835	-		IAI47_18315	0.61	-3.5
3,898,842	+		IAI47_18315	0.62	-1.4
3,898,843	-		IAI47_18315	0.62	-2.8
3,898,925	+		IAI47_18315	0.71	-4.1
3,899,061	+		IAI47_18315	0.85	-1.5
3,899,061	+		IAI47_18315	0.85	-1.8
3,899,061	+		IAI47_18315	0.85	-1.1
3,899,061	+		IAI47_18315	0.85	-4.2
3,899,112	-				-3.0
3,899,182	+				+0.0
3,899,182	+				-0.5
3,899,182	+				+1.7
3,899,183	-				+2.4
3,899,185	+				+0.5
3,899,185	+				+0.2
3,899,185	+				-1.2
3,899,186	-				-0.6
3,899,186	-				-2.6
3,899,186	-				+0.2
3,899,186	-				-2.4
3,899,186	-				+1.7
3,899,186	-				+0.2
3,899,186	-				-0.8
3,899,238	-				-1.8
3,899,239	+				+0.2
3,899,239	+				-2.1
3,899,239	+				+0.2
3,899,239	+				-1.7
3,899,239	+				+1.1
3,899,240	-				-1.4
3,899,240	-				-1.3
3,899,240	-				+2.3
3,899,284	+				-0.8
3,899,284	+				+1.0
3,899,285	-				+0.8
3,899,285	-				+0.2
3,899,285	-				+0.2
3,899,285	-				+1.8
3,899,293	+				+2.4
3,899,293	+				-1.0
3,899,293	+				+1.2
3,899,293	+				-0.2
3,899,293	+				-1.4
3,899,294	-				+1.8
3,899,294	-				-0.0
3,899,294	-				+0.2
3,899,294	-				+0.5
3,899,312	+				+0.9
3,899,312	+				+1.9
3,899,312	+				-3.0
3,899,312	+				+1.7
3,899,313	-				-0.9
3,899,517	+		IAI47_18320	0.50	+0.2
3,899,517	+				-0.4
3,899,518	-		IAI47_18320	0.50	-1.6
3,899,518	-		IAI47_18320	0.50	+0.4
3,899,518	-		IAI47_18320	0.50	+0.2
3,899,518	-		IAI47_18320	0.50	-1.4
3,899,518	-		IAI47_18320	0.50	-0.3
3,899,518	-		IAI47_18320	0.50	+0.6
3,899,518	-		IAI47_18320	0.50	+1.2
3,899,533	+		IAI47_18320	0.53	+1.2
3,899,539	+		IAI47_18320	0.54	-1.8
3,899,539	+		IAI47_18320	0.54	-0.8
3,899,539	+		IAI47_18320	0.54	-2.6
3,899,539	+		IAI47_18320	0.54	+2.2
3,899,539	+		IAI47_18320	0.54	-2.4
3,899,539	+		IAI47_18320	0.54	-0.0
3,899,539	+		IAI47_18320	0.54	-1.1
3,899,539	+		IAI47_18320	0.54	-1.4
3,899,539	+		IAI47_18320	0.54	+0.2
3,899,539	+		IAI47_18320	0.54	-1.2
3,899,540	-		IAI47_18320	0.54	-0.2
3,899,540	-		IAI47_18320	0.54	-1.8
3,899,540	-		IAI47_18320	0.54	-0.1
3,899,540	-		IAI47_18320	0.54	-0.3
3,899,618	-		IAI47_18320	0.71	-1.4
3,899,618	-		IAI47_18320	0.71	-1.8
3,899,618	-		IAI47_18320	0.71	+1.2
3,899,665	+		IAI47_18320	0.80	+0.0
3,899,665	+		IAI47_18320	0.80	+0.2
3,899,665	+		IAI47_18320	0.80	-0.0
3,899,665	+		IAI47_18320	0.80	+0.8
3,899,665	+		IAI47_18320	0.80	+0.8
3,899,665	+		IAI47_18320	0.80	-0.8
3,899,666	-		IAI47_18320	0.81	-2.4
3,899,666	-		IAI47_18320	0.81	-2.1
3,899,666	-		IAI47_18320	0.81	-0.0
3,899,666	-		IAI47_18320	0.81	-3.0
3,899,666	-		IAI47_18320	0.81	-0.8
3,899,666	-		IAI47_18320	0.81	-0.6
3,899,666	-		IAI47_18320	0.81	-2.1
3,899,666	-		IAI47_18320	0.81	-0.0
3,899,666	-		IAI47_18320	0.81	-1.8
3,899,666	-		IAI47_18320	0.81	-0.3
3,899,672	+		IAI47_18320	0.82	-1.4
3,899,673	-		IAI47_18320	0.82	+0.5
3,899,737	+				+0.3
3,899,737	+				-0.8
3,899,738	-				-1.1
3,899,738	-				-0.4
3,899,760	-				+1.2
3,899,856	+				+1.2
3,899,856	+				-0.4
3,899,856	+				+0.2
3,899,856	+				+1.2
3,899,856	+				+0.8
3,899,885	+				+0.4
3,899,885	+				-0.7
3,899,885	+				-0.8
3,899,925	+				-0.4
3,899,925	+				+2.2
3,899,925	+				+0.2
3,899,925	+				-1.4
3,899,925	+				-2.1
3,899,925	+				+2.5
3,899,926	-				+0.2
3,899,926	-				-0.5
3,899,926	-				+1.3
3,899,926	-				-1.8
3,899,926	-				+0.1
3,900,049	+				+1.6
3,900,050	-				+0.2
3,900,050	-				+1.4
3,900,074	+				-0.9
3,900,074	+				+1.1
3,900,074	+				-1.4
3,900,074	+				-0.5
3,900,075	-				+0.2
3,900,075	-				+0.3
3,900,075	-				+1.3
3,900,075	-				+1.6
3,900,075	-				-1.8
3,900,075	-				-0.2
3,900,075	-				+0.8
3,900,075	-				-0.4
3,900,082	-				+0.8
3,900,092	-				-0.3
3,900,092	-				-1.4
3,900,112	+				+0.0
3,900,112	+				-1.4
3,900,112	+				+1.4
3,900,113	-				+1.5
3,900,113	-				+1.2
3,900,113	-				-1.4
3,900,113	-				-1.3
3,900,154	+				-1.0
3,900,154	+				-0.2
3,900,155	-				+0.7
3,900,155	-				+3.7
3,900,187	+		IAI47_18325	0.12	-1.0