Strain Fitness in Pantoea sp. MT58 around IAI47_18000

Experiment: Ying_sugar7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 3
3,825,211	+				+1.2
3,825,211	+				+1.6
3,825,211	+				+0.1
3,825,211	+				+0.9
3,825,211	+				+1.8
3,825,212	-				-1.3
3,825,212	-				-0.4
3,825,212	-				+2.1
3,825,287	+				-0.7
3,825,349	+				+0.5
3,825,511	+		IAI47_17995	0.22	+0.7
3,825,512	-		IAI47_17995	0.22	-1.8
3,825,512	-		IAI47_17995	0.22	+0.2
3,825,512	-		IAI47_17995	0.22	-0.1
3,825,512	-		IAI47_17995	0.22	+1.2
3,825,631	+		IAI47_17995	0.36	+0.7
3,825,632	-		IAI47_17995	0.37	-1.5
3,825,722	+		IAI47_17995	0.47	+0.9
3,825,723	-		IAI47_17995	0.48	-0.4
3,825,723	-		IAI47_17995	0.48	+0.8
3,825,723	-		IAI47_17995	0.48	+2.7
3,825,723	-		IAI47_17995	0.48	+0.0
3,825,856	+		IAI47_17995	0.64	+0.4
3,825,857	-		IAI47_17995	0.64	-1.4
3,825,857	-		IAI47_17995	0.64	+0.3
3,825,857	-		IAI47_17995	0.64	+1.1
3,825,857	-		IAI47_17995	0.64	-0.4
3,825,857	-		IAI47_17995	0.64	-2.1
3,825,887	+		IAI47_17995	0.67	-2.1
3,825,887	+		IAI47_17995	0.67	+1.1
3,825,888	-		IAI47_17995	0.68	-1.4
3,825,888	-		IAI47_17995	0.68	+0.7
3,825,888	-		IAI47_17995	0.68	+1.4
3,825,890	+		IAI47_17995	0.68	+0.6
3,825,890	+		IAI47_17995	0.68	+0.2
3,825,890	+		IAI47_17995	0.68	-0.4
3,825,890	+		IAI47_17995	0.68	-1.0
3,825,890	+		IAI47_17995	0.68	-0.4
3,825,891	-		IAI47_17995	0.68	-0.2
3,825,891	-		IAI47_17995	0.68	-0.4
3,825,891	-		IAI47_17995	0.68	-0.1
3,825,949	+		IAI47_17995	0.75	-0.0
3,825,950	-		IAI47_17995	0.75	+2.2
3,826,016	+		IAI47_17995	0.83	-0.4
3,826,016	+		IAI47_17995	0.83	+0.7
3,826,016	+		IAI47_17995	0.83	-0.2
3,826,016	+		IAI47_17995	0.83	-0.4
3,826,016	+		IAI47_17995	0.83	+1.7
3,826,016	+		IAI47_17995	0.83	-0.5
3,826,016	+		IAI47_17995	0.83	-0.8
3,826,016	+		IAI47_17995	0.83	+1.4
3,826,016	+		IAI47_17995	0.83	+0.7
3,826,016	+		IAI47_17995	0.83	-1.3
3,826,016	+		IAI47_17995	0.83	+2.2
3,826,016	+		IAI47_17995	0.83	+0.1
3,826,017	-		IAI47_17995	0.83	+0.4
3,826,017	-		IAI47_17995	0.83	+0.9
3,826,017	-		IAI47_17995	0.83	-1.0
3,826,017	-		IAI47_17995	0.83	-0.5
3,826,017	-		IAI47_17995	0.83	-1.3
3,826,017	-		IAI47_17995	0.83	+0.5
3,826,099	-				-1.8
3,826,142	+				+0.2
3,826,169	+				-0.7
3,826,169	+				-0.5
3,826,169	+				+1.3
3,826,170	-				+0.2
3,826,171	+				-0.6
3,826,172	-				+1.5
3,826,172	-				+0.0
3,826,172	-				+1.1
3,826,172	-				+0.3
3,826,172	-				+0.2
3,826,272	+				-0.6
3,826,297	-				-0.2
3,826,297	-				+0.2
3,826,372	+		IAI47_18000	0.14	-1.6
3,826,372	+		IAI47_18000	0.14	-1.4
3,826,372	+		IAI47_18000	0.14	-0.4
3,826,373	-		IAI47_18000	0.14	-0.1
3,826,373	-		IAI47_18000	0.14	+1.0
3,826,373	-		IAI47_18000	0.14	+1.0
3,826,373	-		IAI47_18000	0.14	-2.2
3,826,405	+		IAI47_18000	0.16	+0.2
3,826,405	+		IAI47_18000	0.16	-1.2
3,826,406	-		IAI47_18000	0.16	-0.2
3,826,406	-		IAI47_18000	0.16	+0.2
3,826,406	-		IAI47_18000	0.16	+1.0
3,826,468	+		IAI47_18000	0.19	+0.9
3,826,469	-		IAI47_18000	0.19	-0.6
3,826,469	-		IAI47_18000	0.19	-1.8
3,826,473	+		IAI47_18000	0.20	-0.7
3,826,473	+		IAI47_18000	0.20	-0.4
3,826,473	+		IAI47_18000	0.20	-3.0
3,826,474	-		IAI47_18000	0.20	+0.3
3,826,495	-		IAI47_18000	0.21	-0.8
3,826,495	-		IAI47_18000	0.21	+1.2
3,826,509	-		IAI47_18000	0.22	-1.1
3,826,509	-		IAI47_18000	0.22	-0.5
3,826,517	+		IAI47_18000	0.22	-0.5
3,826,517	+		IAI47_18000	0.22	-1.0
3,826,518	-		IAI47_18000	0.22	+0.9
3,826,532	+		IAI47_18000	0.23	+0.0
3,826,567	+		IAI47_18000	0.25	-1.4
3,826,567	+		IAI47_18000	0.25	-0.1
3,826,568	-		IAI47_18000	0.25	-0.4
3,826,568	-		IAI47_18000	0.25	-1.8
3,826,568	-		IAI47_18000	0.25	+1.7
3,826,615	+		IAI47_18000	0.28	+0.0
3,826,615	+		IAI47_18000	0.28	-0.1
3,826,615	+		IAI47_18000	0.28	+1.3
3,826,616	-		IAI47_18000	0.28	+1.0
3,826,635	-		IAI47_18000	0.29	-1.8
3,826,635	-		IAI47_18000	0.29	-1.4
3,826,661	+		IAI47_18000	0.30	-0.3
3,826,662	-		IAI47_18000	0.30	+0.4
3,826,662	-		IAI47_18000	0.30	+0.7
3,826,662	-		IAI47_18000	0.30	+2.0
3,826,683	-		IAI47_18000	0.32	-0.3
3,826,683	-		IAI47_18000	0.32	-0.7
3,826,683	-		IAI47_18000	0.32	+1.0
3,826,684	+		IAI47_18000	0.32	+1.0
3,826,684	+		IAI47_18000	0.32	-1.4
3,826,684	+		IAI47_18000	0.32	-1.4
3,826,684	+		IAI47_18000	0.32	-2.8
3,826,684	+		IAI47_18000	0.32	-3.5
3,826,684	+		IAI47_18000	0.32	+1.0
3,826,684	+		IAI47_18000	0.32	+1.6
3,826,684	+		IAI47_18000	0.32	-1.8
3,826,684	+		IAI47_18000	0.32	-0.1
3,826,684	+		IAI47_18000	0.32	+1.8
3,826,684	+		IAI47_18000	0.32	+0.7
3,826,684	+		IAI47_18000	0.32	-0.5
3,826,684	+		IAI47_18000	0.32	-0.5
3,826,684	+		IAI47_18000	0.32	-1.0
3,826,684	+		IAI47_18000	0.32	-2.6
3,826,684	+		IAI47_18000	0.32	+2.7
3,826,684	+		IAI47_18000	0.32	-1.6
3,826,684	+		IAI47_18000	0.32	+0.2
3,826,685	-		IAI47_18000	0.32	+0.7
3,826,685	-		IAI47_18000	0.32	-0.6
3,826,685	-		IAI47_18000	0.32	-0.1
3,826,820	-		IAI47_18000	0.39	-0.6
3,826,820	-		IAI47_18000	0.39	+0.9
3,826,820	-		IAI47_18000	0.39	+1.8
3,826,820	-		IAI47_18000	0.39	-0.0
3,826,820	-		IAI47_18000	0.39	-1.4
3,826,887	+		IAI47_18000	0.43	+1.4
3,826,987	+		IAI47_18000	0.49	+0.6
3,826,988	-		IAI47_18000	0.49	+0.7
3,827,010	-		IAI47_18000	0.50	-1.8
3,827,036	+		IAI47_18000	0.52	-0.2
3,827,036	+		IAI47_18000	0.52	-0.8
3,827,036	+		IAI47_18000	0.52	-0.9
3,827,037	-		IAI47_18000	0.52	-1.2
3,827,037	-		IAI47_18000	0.52	-1.1
3,827,038	+		IAI47_18000	0.52	-0.5
3,827,038	+		IAI47_18000	0.52	+0.6
3,827,038	+		IAI47_18000	0.52	+0.2
3,827,038	+		IAI47_18000	0.52	+0.0
3,827,038	+		IAI47_18000	0.52	-1.1
3,827,038	+		IAI47_18000	0.52	+0.2
3,827,039	-		IAI47_18000	0.52	+1.3
3,827,039	-		IAI47_18000	0.52	-0.2
3,827,039	-		IAI47_18000	0.52	+2.3
3,827,039	-		IAI47_18000	0.52	-0.1
3,827,039	-		IAI47_18000	0.52	-0.8
3,827,039	-		IAI47_18000	0.52	+0.8
3,827,039	-		IAI47_18000	0.52	-0.5
3,827,039	-		IAI47_18000	0.52	+0.2
3,827,039	-		IAI47_18000	0.52	-0.2
3,827,039	-		IAI47_18000	0.52	-0.8
3,827,039	-		IAI47_18000	0.52	-1.0
3,827,039	-		IAI47_18000	0.52	+0.2
3,827,039	-		IAI47_18000	0.52	-0.7
3,827,039	-		IAI47_18000	0.52	-1.3
3,827,058	-		IAI47_18000	0.53	+1.2
3,827,101	-		IAI47_18000	0.55	+0.9
3,827,110	+		IAI47_18000	0.56	-0.3
3,827,110	+		IAI47_18000	0.56	+2.5
3,827,110	+		IAI47_18000	0.56	-0.1
3,827,110	+		IAI47_18000	0.56	-0.2
3,827,110	+		IAI47_18000	0.56	-1.1
3,827,110	+		IAI47_18000	0.56	+0.8
3,827,110	+		IAI47_18000	0.56	-1.6
3,827,110	+		IAI47_18000	0.56	+0.4
3,827,111	-		IAI47_18000	0.56	+0.2
3,827,111	-		IAI47_18000	0.56	+0.6
3,827,111	-		IAI47_18000	0.56	+0.5
3,827,111	-		IAI47_18000	0.56	-0.1
3,827,111	-		IAI47_18000	0.56	-1.4
3,827,111	-		IAI47_18000	0.56	+0.1
3,827,111	-		IAI47_18000	0.56	-0.3
3,827,111	-		IAI47_18000	0.56	-0.3
3,827,111	-		IAI47_18000	0.56	-0.8
3,827,111	-		IAI47_18000	0.56	+0.2
3,827,122	+		IAI47_18000	0.57	-0.6
3,827,123	-		IAI47_18000	0.57	+0.2
3,827,123	-		IAI47_18000	0.57	+0.9
3,827,123	-		IAI47_18000	0.57	+0.8
3,827,123	-		IAI47_18000	0.57	+1.1
3,827,234	+		IAI47_18000	0.63	-0.3
3,827,284	+		IAI47_18000	0.66	-0.7
3,827,285	-		IAI47_18000	0.66	-0.2
3,827,404	-		IAI47_18000	0.73	-0.5
3,827,404	-		IAI47_18000	0.73	+0.8
3,827,415	+		IAI47_18000	0.73	-0.5
3,827,424	+		IAI47_18000	0.74	+0.4
3,827,424	+		IAI47_18000	0.74	-0.4
3,827,424	+		IAI47_18000	0.74	-0.0
3,827,424	+		IAI47_18000	0.74	-0.2
3,827,425	-		IAI47_18000	0.74	-1.0
3,827,425	-		IAI47_18000	0.74	-0.3
3,827,467	-		IAI47_18000	0.76	+0.5
3,827,516	+		IAI47_18000	0.79	-0.4
3,827,516	+		IAI47_18000	0.79	-0.2
3,827,517	-		IAI47_18000	0.79	+0.9
3,827,563	+		IAI47_18000	0.82	+0.8
3,827,563	+		IAI47_18000	0.82	+0.2
3,827,564	-		IAI47_18000	0.82	+1.3
3,827,564	-		IAI47_18000	0.82	+0.6
3,827,573	+		IAI47_18000	0.82	+0.6
3,827,573	+		IAI47_18000	0.82	-0.1
3,827,574	-		IAI47_18000	0.83	-1.8
3,827,574	-		IAI47_18000	0.83	-1.8
3,827,626	+		IAI47_18000	0.85	-0.5
3,827,722	+				-1.1
3,827,722	+				+0.6
3,827,722	+				+0.6
3,827,722	+				+0.6
3,827,722	+				+0.2
3,827,722	+				+0.8
3,827,723	-				+0.2
3,827,723	-				+2.8
3,827,723	-				+1.4
3,827,723	-				+0.0
3,827,723	-				-1.2
3,827,723	-				+0.6
3,827,723	-				-0.8
3,827,723	-				+0.7
3,827,723	-				-0.8
3,827,801	+				-2.1
3,827,801	+				-0.8
3,827,802	-				-0.3
3,827,802	-				+0.7
3,827,805	-				-0.0
3,827,805	-				+0.2
3,827,821	+				+1.5
3,827,821	+				+1.4
3,827,822	-				-2.4
3,827,846	+				-1.5
3,827,846	+				+1.8
3,827,846	+				-1.2
3,827,846	+				+0.1
3,827,846	+				+0.7
3,827,846	+				-0.9
3,827,846	+				+0.2
3,827,847	-				+1.2
3,827,879	+				+0.3
3,827,879	+				-1.8
3,827,879	+				-0.5
3,827,880	-				+0.2
3,827,880	-				+2.4
3,827,993	-				-0.1
3,828,064	+				+0.8
3,828,064	+				-0.2
3,828,064	+				-0.3
3,828,064	+				+0.1
3,828,064	+				+2.2
3,828,064	+				+1.6
3,828,064	+				+0.2
3,828,064	+				+0.1
3,828,065	-				+0.8
3,828,065	-				+0.2
3,828,065	-				-1.8
3,828,114	+		IAI47_18005	0.13	-2.1
3,828,114	+		IAI47_18005	0.13	+0.2
3,828,115	-		IAI47_18005	0.13	-0.4
3,828,115	-		IAI47_18005	0.13	+1.0
3,828,115	-		IAI47_18005	0.13	-2.4
3,828,115	-		IAI47_18005	0.13	+0.5
3,828,115	-		IAI47_18005	0.13	-0.4
3,828,115	-		IAI47_18005	0.13	-0.9
3,828,141	+		IAI47_18005	0.15	+1.2
3,828,142	-		IAI47_18005	0.15	-0.6
3,828,281	-		IAI47_18005	0.26	+0.2
3,828,281	-		IAI47_18005	0.26	-0.1
3,828,300	+		IAI47_18005	0.27	-0.8
3,828,300	+		IAI47_18005	0.27	+0.8
3,828,300	+		IAI47_18005	0.27	+0.7
3,828,300	+		IAI47_18005	0.27	-0.3
3,828,300	+		IAI47_18005	0.27	-0.5
3,828,301	-		IAI47_18005	0.28	-1.6
3,828,301	-		IAI47_18005	0.28	+0.2
3,828,301	-		IAI47_18005	0.28	+0.9
3,828,301	-		IAI47_18005	0.28	-1.8
3,828,334	+		IAI47_18005	0.30	+1.6
3,828,335	-		IAI47_18005	0.30	+0.3
3,828,335	-		IAI47_18005	0.30	+0.2
3,828,335	-		IAI47_18005	0.30	+0.8
3,828,403	-		IAI47_18005	0.35	+2.2
3,828,403	-		IAI47_18005	0.35	+1.0
3,828,403	-		IAI47_18005	0.35	-2.6
3,828,403	-		IAI47_18005	0.35	+0.5
3,828,403	-		IAI47_18005	0.35	+1.2
3,828,403	-		IAI47_18005	0.35	-2.1
3,828,411	+		IAI47_18005	0.36	+0.1
3,828,411	+		IAI47_18005	0.36	-0.4
3,828,411	+		IAI47_18005	0.36	+0.9
3,828,411	+		IAI47_18005	0.36	+1.2
3,828,411	+		IAI47_18005	0.36	+1.0
3,828,411	+		IAI47_18005	0.36	+0.2
3,828,412	-		IAI47_18005	0.36	-0.7
3,828,412	-		IAI47_18005	0.36	-1.0
3,828,412	-		IAI47_18005	0.36	-2.0
3,828,412	-		IAI47_18005	0.36	+1.3
3,828,412	-		IAI47_18005	0.36	-0.1
3,828,412	-		IAI47_18005	0.36	-0.2
3,828,412	-		IAI47_18005	0.36	+0.2
3,828,412	-		IAI47_18005	0.36	+0.3
3,828,504	+		IAI47_18005	0.43	-0.5
3,828,504	+		IAI47_18005	0.43	-2.1
3,828,505	-		IAI47_18005	0.43	-0.8
3,828,505	-		IAI47_18005	0.43	+2.9
3,828,505	-		IAI47_18005	0.43	-0.6
3,828,505	-		IAI47_18005	0.43	-0.4
3,828,505	-		IAI47_18005	0.43	+0.5
3,828,523	+		IAI47_18005	0.45	+0.2
3,828,523	+		IAI47_18005	0.45	+0.2
3,828,524	-		IAI47_18005	0.45	+0.2
3,828,741	+		IAI47_18005	0.61	+1.0
3,828,741	+		IAI47_18005	0.61	-0.7
3,828,742	-		IAI47_18005	0.61	+0.2
3,828,742	-		IAI47_18005	0.61	+0.0
3,828,742	-		IAI47_18005	0.61	-1.3
3,828,742	-		IAI47_18005	0.61	-2.1
3,828,805	+		IAI47_18005	0.66	+0.1
3,828,805	+		IAI47_18005	0.66	-0.2
3,828,806	-		IAI47_18005	0.66	-0.0