Strain Fitness in Pantoea sp. MT58 around IAI47_16875

Experiment: Ying_sugar7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 3
3,571,108	+				+1.2
3,571,108	+				+0.2
3,571,109	-				-0.4
3,571,109	-				-0.3
3,571,109	-				+0.2
3,571,202	+		IAI47_16865	0.17	-1.8
3,571,202	+		IAI47_16865	0.17	-0.5
3,571,202	+		IAI47_16865	0.17	-0.8
3,571,203	-		IAI47_16865	0.17	-0.8
3,571,203	-		IAI47_16865	0.17	+1.2
3,571,247	+		IAI47_16865	0.27	-0.1
3,571,248	-		IAI47_16865	0.27	-0.4
3,571,299	-		IAI47_16865	0.38	-0.8
3,571,299	-		IAI47_16865	0.38	-0.5
3,571,299	-		IAI47_16865	0.38	-0.8
3,571,299	-		IAI47_16865	0.38	-2.1
3,571,310	+		IAI47_16865	0.40	-0.6
3,571,350	+		IAI47_16865	0.49	+0.5
3,571,350	+		IAI47_16865	0.49	-2.9
3,571,350	+		IAI47_16865	0.49	+0.7
3,571,350	+		IAI47_16865	0.49	+1.1
3,571,350	+		IAI47_16865	0.49	-1.8
3,571,350	+		IAI47_16865	0.49	-1.1
3,571,350	+		IAI47_16865	0.49	+1.4
3,571,350	+		IAI47_16865	0.49	+0.5
3,571,350	+		IAI47_16865	0.49	-0.0
3,571,350	+		IAI47_16865	0.49	+0.2
3,571,351	-		IAI47_16865	0.49	+0.5
3,571,351	-		IAI47_16865	0.49	-0.8
3,571,351	-		IAI47_16865	0.49	-2.4
3,571,351	-		IAI47_16865	0.49	+1.0
3,571,351	-		IAI47_16865	0.49	-1.4
3,571,351	-		IAI47_16865	0.49	+0.2
3,571,386	+		IAI47_16865	0.57	+0.8
3,571,386	+		IAI47_16865	0.57	-0.1
3,571,387	-		IAI47_16865	0.57	-1.9
3,571,463	+		IAI47_16865	0.73	-1.0
3,571,463	+		IAI47_16865	0.73	-1.4
3,571,463	+		IAI47_16865	0.73	+0.4
3,571,463	+		IAI47_16865	0.73	+1.2
3,571,463	+		IAI47_16865	0.73	+1.3
3,571,463	+		IAI47_16865	0.73	-1.4
3,571,463	+		IAI47_16865	0.73	+1.0
3,571,464	-		IAI47_16865	0.74	-0.4
3,571,464	-		IAI47_16865	0.74	-0.0
3,571,496	+		IAI47_16865	0.80	+1.2
3,571,584	+				+0.2
3,571,584	+				+0.7
3,571,585	-				-0.2
3,571,585	-				+1.2
3,571,585	-				+0.2
3,571,603	+				+0.6
3,571,603	+				-0.0
3,571,603	+				+0.7
3,571,603	+				-1.4
3,571,603	+				-1.2
3,571,603	+				-1.1
3,571,603	+				+0.8
3,571,603	+				-0.8
3,571,603	+				+2.0
3,571,603	+				+1.2
3,571,603	+				-1.0
3,571,603	+				+1.0
3,571,604	-				+2.3
3,571,604	-				+0.8
3,571,604	-				+1.1
3,571,604	-				-0.1
3,571,604	-				-0.1
3,571,604	-				+0.8
3,571,604	-				+0.5
3,571,604	-				+1.6
3,571,604	-				-0.1
3,571,605	+				-1.2
3,571,605	+				+0.4
3,571,605	+				-1.0
3,571,606	-				-1.4
3,571,606	-				-1.8
3,571,606	-				-0.8
3,571,642	+				-1.8
3,571,642	+				+0.2
3,571,642	+				-0.1
3,571,642	+				-1.0
3,571,643	-				+0.0
3,571,676	+				-4.4
3,571,707	+		IAI47_16870	0.12	-2.8
3,571,707	+		IAI47_16870	0.12	-2.1
3,571,707	+		IAI47_16870	0.12	-2.6
3,571,707	+		IAI47_16870	0.12	-1.8
3,571,929	+		IAI47_16870	0.70	-1.8
3,571,929	+		IAI47_16870	0.70	-3.4
3,571,929	+		IAI47_16870	0.70	-2.1
3,571,929	+		IAI47_16870	0.70	-4.0
3,571,929	+		IAI47_16870	0.70	-3.0
3,571,929	+		IAI47_16870	0.70	-3.1
3,571,929	+		IAI47_16870	0.70	-3.8
3,571,929	+		IAI47_16870	0.70	-1.4
3,571,929	+		IAI47_16870	0.70	-2.4
3,571,929	+		IAI47_16870	0.70	-2.4
3,571,929	+		IAI47_16870	0.70	-2.4
3,571,929	+		IAI47_16870	0.70	-4.2
3,571,930	-		IAI47_16870	0.70	-1.4
3,571,930	-		IAI47_16870	0.70	-3.1
3,571,930	-		IAI47_16870	0.70	-2.1
3,571,930	-		IAI47_16870	0.70	-2.6
3,571,930	-		IAI47_16870	0.70	-3.8
3,571,930	-		IAI47_16870	0.70	-2.1
3,571,930	-		IAI47_16870	0.70	-3.4
3,571,930	-		IAI47_16870	0.70	-2.8
3,571,930	-		IAI47_16870	0.70	-4.6
3,571,930	-		IAI47_16870	0.70	-0.8
3,572,050	+				-0.5
3,572,050	+				+0.0
3,572,051	-				+0.6
3,572,096	+				-1.1
3,572,096	+				-0.7
3,572,097	-				+0.6
3,572,097	-				+1.2
3,572,103	+				+0.7
3,572,103	+				+1.0
3,572,103	+				+0.5
3,572,104	-				+1.2
3,572,104	-				-0.2
3,572,193	+				-0.5
3,572,205	+				+0.6
3,572,205	+				-0.8
3,572,205	+				+1.8
3,572,205	+				-2.1
3,572,206	-				-1.8
3,572,206	-				+0.5
3,572,206	-				+1.2
3,572,206	-				-0.6
3,572,206	-				-0.5
3,572,206	-				+0.7
3,572,206	-				-2.1
3,572,206	-				-0.3
3,572,206	-				+1.7
3,572,206	-				-1.2
3,572,207	+				+1.7
3,572,207	+				+0.2
3,572,207	+				+0.4
3,572,207	+				+1.2
3,572,207	+				+0.7
3,572,208	-				+0.5
3,572,208	-				+0.8
3,572,208	-				-1.2
3,572,208	-				+0.9
3,572,208	-				-0.3
3,572,220	+		IAI47_16875	0.10	-0.6
3,572,220	+		IAI47_16875	0.10	-2.3
3,572,221	-		IAI47_16875	0.11	-0.0
3,572,221	-		IAI47_16875	0.11	-1.3
3,572,221	-		IAI47_16875	0.11	-1.4
3,572,254	+		IAI47_16875	0.13	+1.6
3,572,255	-		IAI47_16875	0.13	-1.9
3,572,303	-		IAI47_16875	0.17	+0.7
3,572,362	+		IAI47_16875	0.22	+0.1
3,572,366	+		IAI47_16875	0.23	+2.4
3,572,366	+		IAI47_16875	0.23	+0.2
3,572,366	+		IAI47_16875	0.23	+1.8
3,572,366	+		IAI47_16875	0.23	-0.3
3,572,366	+		IAI47_16875	0.23	+0.4
3,572,366	+		IAI47_16875	0.23	+0.5
3,572,367	-		IAI47_16875	0.23	+0.2
3,572,367	-		IAI47_16875	0.23	-0.7
3,572,367	-		IAI47_16875	0.23	+0.5
3,572,367	-		IAI47_16875	0.23	-0.7
3,572,367	-		IAI47_16875	0.23	-0.3
3,572,436	+		IAI47_16875	0.29	+1.2
3,572,436	+		IAI47_16875	0.29	+1.9
3,572,437	-		IAI47_16875	0.29	+0.5
3,572,437	-		IAI47_16875	0.29	+0.1
3,572,656	+		IAI47_16875	0.47	+2.3
3,572,656	+		IAI47_16875	0.47	+0.2
3,572,657	-		IAI47_16875	0.47	-0.3
3,572,657	-		IAI47_16875	0.47	-1.9
3,572,686	+		IAI47_16875	0.50	+0.2
3,572,687	-		IAI47_16875	0.50	-2.4
3,572,687	-		IAI47_16875	0.50	-0.5
3,572,742	+		IAI47_16875	0.54	-1.1
3,572,771	+		IAI47_16875	0.57	-0.4
3,572,771	+		IAI47_16875	0.57	+1.0
3,572,771	+		IAI47_16875	0.57	-0.4
3,572,772	-		IAI47_16875	0.57	+0.0
3,572,772	-		IAI47_16875	0.57	+0.2
3,572,772	-		IAI47_16875	0.57	-1.2
3,572,806	-		IAI47_16875	0.60	+1.4
3,572,806	-		IAI47_16875	0.60	+1.5
3,572,806	-		IAI47_16875	0.60	+1.2
3,572,806	-		IAI47_16875	0.60	-0.6
3,572,806	-		IAI47_16875	0.60	+1.0
3,572,806	-		IAI47_16875	0.60	-0.0
3,572,930	+		IAI47_16875	0.70	+0.9
3,572,930	+		IAI47_16875	0.70	+0.2
3,572,930	+		IAI47_16875	0.70	-0.5
3,572,931	-		IAI47_16875	0.70	+1.2
3,572,931	-		IAI47_16875	0.70	+0.0
3,572,931	-		IAI47_16875	0.70	+0.2
3,572,946	-		IAI47_16875	0.71	+0.1
3,572,965	+		IAI47_16875	0.73	+1.0
3,572,973	+		IAI47_16875	0.74	+0.5
3,572,973	+		IAI47_16875	0.74	+0.4
3,572,974	-		IAI47_16875	0.74	+0.6
3,572,975	+		IAI47_16875	0.74	+0.0
3,572,975	+		IAI47_16875	0.74	+1.4
3,572,976	-		IAI47_16875	0.74	+0.4
3,573,033	+		IAI47_16875	0.79	-0.0
3,573,033	+		IAI47_16875	0.79	-1.1
3,573,033	+		IAI47_16875	0.79	-1.1
3,573,034	-		IAI47_16875	0.79	+0.2
3,573,034	-		IAI47_16875	0.79	-0.7
3,573,036	+		IAI47_16875	0.79	+1.0
3,573,037	-		IAI47_16875	0.79	-1.4
3,573,105	+		IAI47_16875	0.85	-0.8
3,573,105	+		IAI47_16875	0.85	-0.5
3,573,105	+		IAI47_16875	0.85	+1.5
3,573,105	+		IAI47_16875	0.85	+1.0
3,573,106	-		IAI47_16875	0.85	-1.3
3,573,107	+		IAI47_16875	0.85	+0.6
3,573,107	+		IAI47_16875	0.85	+2.8
3,573,108	-		IAI47_16875	0.85	+0.5
3,573,108	-		IAI47_16875	0.85	+0.2
3,573,108	-		IAI47_16875	0.85	+0.2
3,573,108	-		IAI47_16875	0.85	+0.8
3,573,130	+		IAI47_16875	0.87	-0.9
3,573,130	+		IAI47_16875	0.87	-0.8
3,573,130	+		IAI47_16875	0.87	-1.4
3,573,131	-		IAI47_16875	0.87	+0.6
3,573,131	-		IAI47_16875	0.87	-3.0
3,573,156	-		IAI47_16875	0.89	+1.2
3,573,173	-				-0.1
3,573,270	+				+0.4
3,573,271	-				-1.4
3,573,271	-				-0.5
3,573,322	+				-1.4
3,573,641	+		IAI47_16880	0.17	+0.2
3,573,642	-		IAI47_16880	0.17	+3.1
3,573,655	+		IAI47_16880	0.17	-0.4
3,573,655	+		IAI47_16880	0.17	-0.8
3,573,655	+		IAI47_16880	0.17	+1.0
3,573,656	-		IAI47_16880	0.17	-0.1
3,573,656	-		IAI47_16880	0.17	+1.5
3,573,674	+		IAI47_16880	0.18	+0.4
3,573,733	+		IAI47_16880	0.21	+0.3
3,573,734	-		IAI47_16880	0.21	-1.8
3,573,866	+		IAI47_16880	0.27	-1.1
3,573,867	-		IAI47_16880	0.27	+1.0
3,573,902	-		IAI47_16880	0.29	-1.4
3,573,925	+		IAI47_16880	0.30	+0.1
3,573,925	+		IAI47_16880	0.30	+0.3
3,573,925	+		IAI47_16880	0.30	+0.5
3,573,925	+		IAI47_16880	0.30	+0.2
3,573,925	+		IAI47_16880	0.30	-0.4
3,573,926	-		IAI47_16880	0.30	+0.9
3,573,926	-		IAI47_16880	0.30	-0.9
3,573,926	-		IAI47_16880	0.30	-0.6
3,573,926	-		IAI47_16880	0.30	+0.2
3,573,926	-		IAI47_16880	0.30	-0.0
3,573,936	-		IAI47_16880	0.30	+1.2
3,573,937	+		IAI47_16880	0.30	-0.6
3,573,937	+		IAI47_16880	0.30	+0.9
3,573,937	+		IAI47_16880	0.30	+1.0
3,573,937	+		IAI47_16880	0.30	-0.6
3,573,937	+		IAI47_16880	0.30	+0.5
3,573,937	+		IAI47_16880	0.30	-1.6
3,573,937	+		IAI47_16880	0.30	+0.2
3,573,938	-		IAI47_16880	0.30	+0.0
3,573,938	-		IAI47_16880	0.30	-1.4
3,573,938	-		IAI47_16880	0.30	-0.1
3,573,938	-		IAI47_16880	0.30	+0.3
3,573,938	-		IAI47_16880	0.30	-0.8
3,573,938	-		IAI47_16880	0.30	-0.5
3,573,985	+		IAI47_16880	0.33	-1.2
3,573,985	+		IAI47_16880	0.33	+0.4
3,573,985	+		IAI47_16880	0.33	-1.6
3,573,985	+		IAI47_16880	0.33	+1.5
3,573,985	+		IAI47_16880	0.33	-0.9
3,573,986	-		IAI47_16880	0.33	-0.0
3,573,986	-		IAI47_16880	0.33	-0.4
3,574,027	+		IAI47_16880	0.35	+1.8
3,574,027	+		IAI47_16880	0.35	-2.8
3,574,028	-		IAI47_16880	0.35	+1.2
3,574,028	-		IAI47_16880	0.35	+1.8
3,574,028	-		IAI47_16880	0.35	-1.4
3,574,028	-		IAI47_16880	0.35	+1.0
3,574,031	+		IAI47_16880	0.35	+0.2
3,574,032	-		IAI47_16880	0.35	+0.8
3,574,070	+		IAI47_16880	0.37	+0.9
3,574,070	+		IAI47_16880	0.37	-0.3
3,574,070	+		IAI47_16880	0.37	-0.1
3,574,071	-		IAI47_16880	0.37	-1.0
3,574,071	-		IAI47_16880	0.37	+0.7
3,574,071	-		IAI47_16880	0.37	-1.7
3,574,071	-		IAI47_16880	0.37	-0.2
3,574,071	-		IAI47_16880	0.37	-2.0
3,574,071	-		IAI47_16880	0.37	+0.8
3,574,079	-		IAI47_16880	0.37	-0.2
3,574,120	+		IAI47_16880	0.39	-0.9
3,574,155	-		IAI47_16880	0.41	-0.2
3,574,206	-		IAI47_16880	0.43	-0.2
3,574,206	-		IAI47_16880	0.43	+1.0
3,574,206	-		IAI47_16880	0.43	-0.5
3,574,272	-		IAI47_16880	0.46	+0.1