Strain Fitness in Pantoea sp. MT58 around IAI47_14945

Experiment: Ying_sugar7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 3
3,151,086	+		IAI47_14935	0.52	+1.8
3,151,086	+		IAI47_14935	0.52	+0.4
3,151,086	+		IAI47_14935	0.52	+0.2
3,151,086	+		IAI47_14935	0.52	+2.5
3,151,086	+		IAI47_14935	0.52	-0.5
3,151,086	+		IAI47_14935	0.52	+0.4
3,151,086	+		IAI47_14935	0.52	-2.4
3,151,087	-		IAI47_14935	0.52	-2.6
3,151,087	-		IAI47_14935	0.52	+0.5
3,151,087	-		IAI47_14935	0.52	+1.2
3,151,232	+		IAI47_14935	0.72	+1.2
3,151,232	+		IAI47_14935	0.72	+0.9
3,151,232	+		IAI47_14935	0.72	+0.7
3,151,232	+		IAI47_14935	0.72	+1.6
3,151,233	-		IAI47_14935	0.72	-1.1
3,151,233	-		IAI47_14935	0.72	-1.1
3,151,268	+		IAI47_14935	0.77	-1.3
3,151,268	+		IAI47_14935	0.77	+0.9
3,151,268	+		IAI47_14935	0.77	-2.8
3,151,307	+		IAI47_14935	0.82	-1.1
3,151,308	-		IAI47_14935	0.82	+1.0
3,151,314	-		IAI47_14935	0.83	-1.5
3,151,368	+				-0.6
3,151,369	-				-0.2
3,151,369	-				-0.4
3,151,369	-				+1.8
3,151,369	-				+0.6
3,151,434	+				-0.1
3,151,434	+				-0.4
3,151,434	+				-0.4
3,151,435	-				+1.0
3,151,435	-				+0.3
3,151,435	-				-0.4
3,151,465	+				+0.2
3,151,466	-				+1.3
3,151,466	-				-0.6
3,151,555	+		IAI47_14940	0.27	-2.1
3,151,555	+		IAI47_14940	0.27	-0.2
3,151,556	-		IAI47_14940	0.27	-0.1
3,151,584	-		IAI47_14940	0.33	-2.4
3,151,759	-		IAI47_14940	0.71	-0.4
3,151,816	+		IAI47_14940	0.84	+1.2
3,151,882	+				-0.4
3,151,882	+				-0.4
3,151,882	+				+0.2
3,151,883	-				-0.2
3,151,883	-				+1.4
3,151,899	+				-0.3
3,151,899	+				-2.8
3,151,899	+				+0.6
3,151,899	+				+0.2
3,151,899	+				+2.7
3,151,899	+				+1.8
3,151,899	+				+1.2
3,151,899	+				+0.5
3,151,899	+				+0.8
3,151,900	-				-1.0
3,151,937	+				-0.6
3,151,938	-				+0.5
3,151,992	+				-0.6
3,152,010	+				-0.2
3,152,010	+				+2.9
3,152,010	+				-1.1
3,152,010	+				+1.6
3,152,010	+				+0.2
3,152,010	+				-1.4
3,152,010	+				-1.8
3,152,010	+				-0.7
3,152,011	-				-0.8
3,152,011	-				+0.5
3,152,011	-				+0.2
3,152,011	-				-0.7
3,152,011	-				-1.4
3,152,015	+				+0.4
3,152,015	+				+2.5
3,152,015	+				+1.2
3,152,015	+				+0.8
3,152,015	+				+0.2
3,152,016	-				-2.1
3,152,036	+				+0.8
3,152,036	+				-0.4
3,152,036	+				+0.5
3,152,036	+				+0.2
3,152,037	-				-2.1
3,152,037	-				-1.4
3,152,152	+		IAI47_14945	0.12	+0.2
3,152,204	+		IAI47_14945	0.18	-1.8
3,152,204	+		IAI47_14945	0.18	-2.1
3,152,299	-		IAI47_14945	0.30	-2.1
3,152,422	+		IAI47_14945	0.45	-1.4
3,152,423	-		IAI47_14945	0.45	-1.8
3,152,547	-		IAI47_14945	0.60	+0.2
3,152,591	+		IAI47_14945	0.66	-1.8
3,152,592	-		IAI47_14945	0.66	-1.8
3,152,592	-		IAI47_14945	0.66	-1.8
3,152,599	+		IAI47_14945	0.67	-0.8
3,152,599	+		IAI47_14945	0.67	-0.8
3,152,599	+		IAI47_14945	0.67	-2.6
3,152,599	+		IAI47_14945	0.67	-1.8
3,152,599	+		IAI47_14945	0.67	-0.8
3,152,926	-				-2.1
3,153,010	+				-0.5
3,153,010	+				-0.4
3,153,011	-				+0.7
3,153,011	-				-1.4
3,153,012	+				-1.6
3,153,012	+				+0.8
3,153,012	+				-0.5
3,153,012	+				+0.6
3,153,012	+				+1.8
3,153,012	+				+0.2
3,153,012	+				+0.5
3,153,012	+				-2.4
3,153,013	-				-1.6
3,153,013	-				+0.5
3,153,013	-				+0.2
3,153,013	-				+1.0
3,153,013	-				-0.2
3,153,013	-				-0.2
3,153,013	-				+2.4
3,153,013	-				+0.8
3,153,013	-				-0.1
3,153,013	-				-2.1
3,153,016	+				-1.5
3,153,016	+				+0.4
3,153,016	+				+1.2
3,153,016	+				-0.3
3,153,016	+				-0.2
3,153,017	-				-0.8
3,153,017	-				+0.5
3,153,017	-				-0.4
3,153,017	-				-0.1
3,153,057	+				+0.7
3,153,057	+				+0.9
3,153,058	-				+0.5
3,153,058	-				-0.8
3,153,076	+				-0.6
3,153,095	+		IAI47_14950	0.11	+1.0
3,153,095	+		IAI47_14950	0.11	+0.3
3,153,096	-		IAI47_14950	0.11	+0.1
3,153,132	+		IAI47_14950	0.14	+1.0
3,153,132	+		IAI47_14950	0.14	-0.3
3,153,132	+		IAI47_14950	0.14	-0.3
3,153,132	+		IAI47_14950	0.14	-0.5
3,153,132	+		IAI47_14950	0.14	+0.8
3,153,132	+		IAI47_14950	0.14	+0.6
3,153,132	+		IAI47_14950	0.14	-0.5
3,153,133	-		IAI47_14950	0.14	-1.6
3,153,133	-		IAI47_14950	0.14	+0.2
3,153,133	-		IAI47_14950	0.14	-0.0
3,153,133	-		IAI47_14950	0.14	-0.2
3,153,138	+		IAI47_14950	0.14	+0.4
3,153,138	+		IAI47_14950	0.14	-2.6
3,153,139	-		IAI47_14950	0.14	-2.1
3,153,151	-		IAI47_14950	0.15	-1.0
3,153,205	+		IAI47_14950	0.18	-0.8
3,153,205	+		IAI47_14950	0.18	+0.2
3,153,205	+		IAI47_14950	0.18	-0.4
3,153,205	+		IAI47_14950	0.18	-1.4
3,153,205	+		IAI47_14950	0.18	-0.1
3,153,205	+		IAI47_14950	0.18	+0.7
3,153,205	+		IAI47_14950	0.18	+1.6
3,153,205	+		IAI47_14950	0.18	-2.4
3,153,205	+		IAI47_14950	0.18	+0.2
3,153,205	+		IAI47_14950	0.18	-0.6
3,153,206	-		IAI47_14950	0.18	+1.7
3,153,206	-		IAI47_14950	0.18	+0.2
3,153,246	+		IAI47_14950	0.21	-1.1
3,153,246	+		IAI47_14950	0.21	+0.2
3,153,256	+		IAI47_14950	0.22	-1.2
3,153,282	+		IAI47_14950	0.23	-1.1
3,153,283	-		IAI47_14950	0.24	-0.4
3,153,283	-		IAI47_14950	0.24	+0.0
3,153,283	-		IAI47_14950	0.24	+3.9
3,153,310	+		IAI47_14950	0.25	-0.2
3,153,310	+		IAI47_14950	0.25	-0.1
3,153,310	+		IAI47_14950	0.25	+1.9
3,153,310	+		IAI47_14950	0.25	-0.3
3,153,310	+		IAI47_14950	0.25	-1.6
3,153,311	-		IAI47_14950	0.25	-0.2
3,153,311	-		IAI47_14950	0.25	+1.0
3,153,311	-		IAI47_14950	0.25	-0.3
3,153,311	-		IAI47_14950	0.25	+1.8
3,153,311	-		IAI47_14950	0.25	+0.4
3,153,311	-		IAI47_14950	0.25	-0.5
3,153,313	+		IAI47_14950	0.25	+0.8
3,153,313	+		IAI47_14950	0.25	+0.4
3,153,313	+		IAI47_14950	0.25	-2.4
3,153,313	+		IAI47_14950	0.25	-0.6
3,153,314	-		IAI47_14950	0.26	-1.0
3,153,314	-		IAI47_14950	0.26	-0.6
3,153,379	+		IAI47_14950	0.30	+1.8
3,153,380	-		IAI47_14950	0.30	-0.2
3,153,380	-		IAI47_14950	0.30	-1.1
3,153,380	-		IAI47_14950	0.30	+0.2
3,153,380	-		IAI47_14950	0.30	+3.0
3,153,424	+		IAI47_14950	0.33	-1.0
3,153,464	+		IAI47_14950	0.35	-1.5
3,153,464	+		IAI47_14950	0.35	+1.0
3,153,464	+		IAI47_14950	0.35	+0.2
3,153,465	-		IAI47_14950	0.35	+1.9
3,153,465	-		IAI47_14950	0.35	-0.8
3,153,537	+		IAI47_14950	0.40	+0.2
3,153,543	+		IAI47_14950	0.41	+0.2
3,153,544	-		IAI47_14950	0.41	+1.3
3,153,544	-		IAI47_14950	0.41	-0.8
3,153,613	+		IAI47_14950	0.45	-0.2
3,153,613	+		IAI47_14950	0.45	+1.8
3,153,614	-		IAI47_14950	0.45	-0.3
3,153,680	-		IAI47_14950	0.50	+0.2
3,153,823	+		IAI47_14950	0.59	+0.5