Strain Fitness in Pantoea sp. MT58 around IAI47_14935

Experiment: Ying_sugar7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 3
3,149,751	-				+0.2
3,149,751	-				-2.0
3,149,751	-				+0.2
3,149,756	+				+0.2
3,149,756	+				-1.2
3,149,756	+				+1.1
3,149,756	+				+0.9
3,149,756	+				-0.2
3,149,756	+				-0.8
3,149,757	-				-1.4
3,149,757	-				-1.6
3,149,757	-				-0.4
3,149,757	-				+0.8
3,149,757	-				+0.2
3,149,810	+				+1.2
3,149,810	+				-2.8
3,149,810	+				-0.2
3,149,815	+				+0.7
3,149,815	+				+1.1
3,149,815	+				-0.5
3,149,815	+				+0.4
3,149,815	+				+0.2
3,149,815	+				-0.8
3,149,815	+				-0.7
3,149,815	+				+1.0
3,149,816	-				+1.2
3,149,816	-				-0.1
3,149,816	-				-2.0
3,149,816	-				-0.4
3,149,819	+				+0.9
3,149,819	+				+0.6
3,149,819	+				+0.2
3,149,820	-				+0.4
3,149,820	-				-0.3
3,149,820	-				-0.8
3,149,820	-				-1.3
3,149,820	-				+0.8
3,149,821	+				+0.2
3,149,821	+				+0.2
3,149,821	+				-0.5
3,149,822	-				+1.0
3,149,822	-				-0.4
3,149,822	-				+0.4
3,149,870	-				-0.7
3,149,870	-				-1.6
3,150,025	-		IAI47_14930	0.30	-0.3
3,150,123	-		IAI47_14930	0.49	-0.2
3,150,123	-		IAI47_14930	0.49	-0.8
3,150,123	-		IAI47_14930	0.49	-0.8
3,150,123	-		IAI47_14930	0.49	+0.2
3,150,123	-		IAI47_14930	0.49	+1.8
3,150,123	-		IAI47_14930	0.49	+0.2
3,150,296	+		IAI47_14930	0.82	-0.8
3,150,302	+		IAI47_14930	0.83	+0.8
3,150,384	+				-1.8
3,150,385	-				-2.1
3,150,385	-				-0.8
3,150,437	-				-0.6
3,150,437	-				+0.3
3,150,444	+				-0.5
3,150,444	+				-2.1
3,150,445	-				+0.4
3,150,456	+				+0.2
3,150,456	+				-0.2
3,150,456	+				+1.2
3,150,459	+				-0.8
3,150,459	+				+1.2
3,150,470	+				-0.6
3,150,501	-				+1.4
3,150,536	+				-1.0
3,150,603	-				+0.4
3,150,630	+				-2.8
3,150,630	+				-0.8
3,150,638	+				+0.6
3,150,676	-				-0.6
3,150,676	-				-2.4
3,150,676	-				+0.1
3,150,677	+				-0.0
3,150,677	+				-0.4
3,150,677	+				+0.5
3,150,677	+				+1.0
3,150,677	+				+1.5
3,150,677	+				+1.4
3,150,677	+				-2.4
3,150,677	+				+1.2
3,150,677	+				+0.5
3,150,677	+				+0.3
3,150,678	-				-0.8
3,150,678	-				-0.2
3,150,678	-				+0.8
3,150,678	-				-0.2
3,150,678	-				-0.3
3,150,678	-				-1.6
3,150,678	-				-1.0
3,150,678	-				+1.2
3,150,678	-				-0.8
3,150,678	-				-3.5
3,150,678	-				-1.3
3,150,678	-				-0.2
3,150,678	-				-0.4
3,150,678	-				-1.6
3,150,678	-				+1.1
3,150,678	-				-0.8
3,150,678	-				+2.1
3,150,678	-				-0.9
3,150,678	-				+2.1
3,150,683	+				+0.4
3,150,683	+				+0.1
3,150,684	-				+1.5
3,150,684	-				-2.6
3,150,810	-		IAI47_14935	0.14	+0.2
3,150,843	+		IAI47_14935	0.19	+0.2
3,150,843	+		IAI47_14935	0.19	-0.6
3,150,843	+		IAI47_14935	0.19	-0.8
3,150,843	+		IAI47_14935	0.19	-1.4
3,150,844	-		IAI47_14935	0.19	+1.2
3,150,844	-		IAI47_14935	0.19	+0.7
3,150,844	-		IAI47_14935	0.19	-3.3
3,150,846	+		IAI47_14935	0.19	+0.2
3,150,846	+		IAI47_14935	0.19	+0.8
3,150,846	+		IAI47_14935	0.19	+1.5
3,150,846	+		IAI47_14935	0.19	-0.5
3,150,846	+		IAI47_14935	0.19	+1.7
3,150,847	-		IAI47_14935	0.19	+1.9
3,150,847	-		IAI47_14935	0.19	+0.4
3,150,847	-		IAI47_14935	0.19	-1.0
3,150,847	-		IAI47_14935	0.19	-0.4
3,150,847	-		IAI47_14935	0.19	+3.5
3,150,847	-		IAI47_14935	0.19	-0.8
3,150,847	-		IAI47_14935	0.19	+0.1
3,150,847	-		IAI47_14935	0.19	-0.5
3,150,847	-		IAI47_14935	0.19	-1.4
3,150,847	-		IAI47_14935	0.19	+0.6
3,150,847	-		IAI47_14935	0.19	-0.8
3,151,086	+		IAI47_14935	0.52	+1.8
3,151,086	+		IAI47_14935	0.52	+0.4
3,151,086	+		IAI47_14935	0.52	+0.2
3,151,086	+		IAI47_14935	0.52	+2.5
3,151,086	+		IAI47_14935	0.52	-0.5
3,151,086	+		IAI47_14935	0.52	+0.4
3,151,086	+		IAI47_14935	0.52	-2.4
3,151,087	-		IAI47_14935	0.52	-2.6
3,151,087	-		IAI47_14935	0.52	+0.5
3,151,087	-		IAI47_14935	0.52	+1.2
3,151,232	+		IAI47_14935	0.72	+1.2
3,151,232	+		IAI47_14935	0.72	+0.9
3,151,232	+		IAI47_14935	0.72	+0.7
3,151,232	+		IAI47_14935	0.72	+1.6
3,151,233	-		IAI47_14935	0.72	-1.1
3,151,233	-		IAI47_14935	0.72	-1.1
3,151,268	+		IAI47_14935	0.77	-1.3
3,151,268	+		IAI47_14935	0.77	+0.9
3,151,268	+		IAI47_14935	0.77	-2.8
3,151,307	+		IAI47_14935	0.82	-1.1
3,151,308	-		IAI47_14935	0.82	+1.0
3,151,314	-		IAI47_14935	0.83	-1.5
3,151,368	+				-0.6
3,151,369	-				-0.2
3,151,369	-				-0.4
3,151,369	-				+1.8
3,151,369	-				+0.6
3,151,434	+				-0.1
3,151,434	+				-0.4
3,151,434	+				-0.4
3,151,435	-				+1.0
3,151,435	-				+0.3
3,151,435	-				-0.4
3,151,465	+				+0.2
3,151,466	-				+1.3
3,151,466	-				-0.6
3,151,555	+		IAI47_14940	0.27	-2.1
3,151,555	+		IAI47_14940	0.27	-0.2
3,151,556	-		IAI47_14940	0.27	-0.1
3,151,584	-		IAI47_14940	0.33	-2.4
3,151,759	-		IAI47_14940	0.71	-0.4
3,151,816	+		IAI47_14940	0.84	+1.2
3,151,882	+				-0.4
3,151,882	+				-0.4
3,151,882	+				+0.2
3,151,883	-				-0.2
3,151,883	-				+1.4
3,151,899	+				-0.3
3,151,899	+				-2.8
3,151,899	+				+0.6
3,151,899	+				+0.2
3,151,899	+				+2.7
3,151,899	+				+1.8
3,151,899	+				+1.2
3,151,899	+				+0.5
3,151,899	+				+0.8
3,151,900	-				-1.0
3,151,937	+				-0.6
3,151,938	-				+0.5
3,151,992	+				-0.6
3,152,010	+				-0.2
3,152,010	+				+2.9
3,152,010	+				-1.1
3,152,010	+				+1.6
3,152,010	+				+0.2
3,152,010	+				-1.4
3,152,010	+				-1.8
3,152,010	+				-0.7
3,152,011	-				-0.8
3,152,011	-				+0.5
3,152,011	-				+0.2
3,152,011	-				-0.7
3,152,011	-				-1.4
3,152,015	+				+0.4
3,152,015	+				+2.5
3,152,015	+				+1.2
3,152,015	+				+0.8
3,152,015	+				+0.2
3,152,016	-				-2.1
3,152,036	+				+0.8
3,152,036	+				-0.4
3,152,036	+				+0.5
3,152,036	+				+0.2
3,152,037	-				-2.1
3,152,037	-				-1.4
3,152,152	+		IAI47_14945	0.12	+0.2
3,152,204	+		IAI47_14945	0.18	-1.8
3,152,204	+		IAI47_14945	0.18	-2.1
3,152,299	-		IAI47_14945	0.30	-2.1
3,152,422	+		IAI47_14945	0.45	-1.4
3,152,423	-		IAI47_14945	0.45	-1.8