Strain Fitness in Pantoea sp. MT58 around IAI47_12190

Experiment: Ying_sugar7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 3
2,579,771	-				+1.0
2,579,805	+				-1.1
2,579,805	+				+0.4
2,579,805	+				-0.2
2,579,806	-				-1.6
2,579,806	-				-0.9
2,579,806	-				-1.3
2,579,985	-		IAI47_12190	0.19	+2.5
2,579,988	+		IAI47_12190	0.19	+1.0
2,579,988	+		IAI47_12190	0.19	+1.0
2,579,989	-		IAI47_12190	0.19	-1.2
2,579,989	-		IAI47_12190	0.19	+0.3
2,580,057	+		IAI47_12190	0.26	+0.7
2,580,058	-		IAI47_12190	0.26	+1.1
2,580,058	-		IAI47_12190	0.26	+0.2
2,580,117	+		IAI47_12190	0.33	+2.1
2,580,118	-		IAI47_12190	0.33	+0.7
2,580,148	+		IAI47_12190	0.36	-0.1
2,580,148	+		IAI47_12190	0.36	+1.7
2,580,148	+		IAI47_12190	0.36	-3.2
2,580,149	-		IAI47_12190	0.36	+1.5
2,580,149	-		IAI47_12190	0.36	-0.2
2,580,149	-		IAI47_12190	0.36	+1.3
2,580,179	+		IAI47_12190	0.40	-0.4
2,580,179	+		IAI47_12190	0.40	-0.3
2,580,244	+		IAI47_12190	0.47	-1.0
2,580,245	-		IAI47_12190	0.47	-0.2
2,580,245	-		IAI47_12190	0.47	-1.5
2,580,261	-		IAI47_12190	0.49	-0.5
2,580,287	+		IAI47_12190	0.51	-1.5
2,580,392	+		IAI47_12190	0.63	+0.6
2,580,392	+		IAI47_12190	0.63	+0.6
2,580,393	-		IAI47_12190	0.63	-1.7
2,580,508	+		IAI47_12190	0.75	-1.0
2,580,508	+		IAI47_12190	0.75	+2.1
2,580,508	+		IAI47_12190	0.75	-0.3
2,580,567	+		IAI47_12190	0.82	+0.3
2,580,568	-		IAI47_12190	0.82	-0.3
2,580,705	+				-0.4
2,580,722	+				+0.3
2,580,722	+				+0.1
2,580,722	+				-1.7
2,580,722	+				+0.2
2,580,722	+				+1.1
2,580,722	+				-0.5
2,580,722	+				-0.1
2,580,723	-				-1.1
2,580,723	-				+0.7
2,580,723	-				-1.9
2,580,723	-				+0.7
2,580,723	-				+1.5
2,580,726	+				+0.6
2,580,727	-				+0.2
2,580,727	-				-3.7
2,580,727	-				-0.7
2,580,727	-				+0.1
2,580,727	-				+0.5
2,580,727	-				-0.9
2,580,727	-				+0.7
2,580,727	-				-1.1
2,580,727	-				-1.0
2,580,727	-				-1.4
2,580,727	-				+1.4
2,580,804	+		IAI47_12195	0.11	+2.0
2,580,804	+		IAI47_12195	0.11	+0.1
2,580,804	+		IAI47_12195	0.11	-0.3
2,580,805	-		IAI47_12195	0.11	-2.2
2,580,885	+		IAI47_12195	0.23	-0.5
2,580,885	+		IAI47_12195	0.23	-0.5
2,580,885	+		IAI47_12195	0.23	-0.2
2,580,886	-		IAI47_12195	0.23	+0.1
2,580,886	-		IAI47_12195	0.23	-1.7
2,580,886	-		IAI47_12195	0.23	-0.9
2,580,886	-		IAI47_12195	0.23	+2.1
2,581,116	+		IAI47_12195	0.59	+2.2
2,581,133	+		IAI47_12195	0.62	+0.4
2,581,133	+		IAI47_12195	0.62	+1.7
2,581,134	-		IAI47_12195	0.62	+1.4
2,581,134	-		IAI47_12195	0.62	+0.1
2,581,141	+		IAI47_12195	0.63	+1.1
2,581,225	+		IAI47_12195	0.77	+0.8
2,581,225	+		IAI47_12195	0.77	-1.5
2,581,226	-		IAI47_12195	0.77	+1.1
2,581,250	+		IAI47_12195	0.80	+0.7
2,581,261	-		IAI47_12195	0.82	+0.6
2,581,261	-		IAI47_12195	0.82	+2.1
2,581,295	+		IAI47_12195	0.87	+0.8
2,581,339	+				+1.9
2,581,340	-				+0.3
2,581,360	+				-0.8
2,581,427	+				-0.9
2,581,427	+				-2.6
2,581,427	+				-0.2
2,581,427	+				+0.3
2,581,428	-				+0.4
2,581,428	-				-1.1
2,581,428	-				+1.3
2,581,466	+		IAI47_12200	0.13	+0.6
2,581,466	+		IAI47_12200	0.13	+0.4
2,581,467	-		IAI47_12200	0.13	-0.9
2,581,467	-		IAI47_12200	0.13	-1.4
2,581,467	-		IAI47_12200	0.13	+0.1
2,581,467	-		IAI47_12200	0.13	-0.4
2,581,467	-		IAI47_12200	0.13	-1.0
2,581,467	-		IAI47_12200	0.13	-0.4
2,581,474	-		IAI47_12200	0.14	+0.1
2,581,548	+		IAI47_12200	0.27	+0.9
2,581,548	+		IAI47_12200	0.27	+1.7
2,581,548	+		IAI47_12200	0.27	-1.6
2,581,571	-		IAI47_12200	0.30	-0.7
2,581,571	-		IAI47_12200	0.30	+0.8
2,581,588	+		IAI47_12200	0.33	+0.5
2,581,588	+		IAI47_12200	0.33	+0.9
2,581,588	+		IAI47_12200	0.33	-0.0
2,581,588	+		IAI47_12200	0.33	-0.0
2,581,588	+		IAI47_12200	0.33	+0.5
2,581,588	+		IAI47_12200	0.33	+2.3
2,581,589	-		IAI47_12200	0.34	+1.3
2,581,589	-		IAI47_12200	0.34	-2.2
2,581,589	-		IAI47_12200	0.34	+0.9
2,581,589	-		IAI47_12200	0.34	+0.3
2,581,590	+		IAI47_12200	0.34	+1.7
2,581,591	-		IAI47_12200	0.34	+0.7
2,581,591	-		IAI47_12200	0.34	-2.5
2,581,591	-		IAI47_12200	0.34	-0.6
2,581,591	-		IAI47_12200	0.34	+1.0
2,581,657	-		IAI47_12200	0.45	-1.9
2,581,666	-		IAI47_12200	0.47	-0.2
2,581,666	-		IAI47_12200	0.47	-0.5
2,581,666	-		IAI47_12200	0.47	+0.1
2,581,666	-		IAI47_12200	0.47	+0.0
2,581,666	-		IAI47_12200	0.47	+0.1
2,581,666	-		IAI47_12200	0.47	+0.3
2,581,718	+		IAI47_12200	0.55	+2.8
2,581,718	+		IAI47_12200	0.55	+1.8
2,581,718	+		IAI47_12200	0.55	-1.2