Strain Fitness in Pantoea sp. MT58 around IAI47_08380

Experiment: Ying_sugar7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 3
1,774,841	-				+0.7
1,774,841	-				-1.0
1,774,848	+				+1.8
1,774,849	-				+2.0
1,774,903	+				+0.6
1,774,904	-				-0.1
1,774,904	-				+0.4
1,774,923	+				-0.5
1,774,923	+				+0.1
1,774,923	+				-0.3
1,774,923	+				+2.3
1,774,924	-				+1.9
1,774,924	-				+0.2
1,774,924	-				+0.2
1,774,924	-				+0.6
1,774,924	-				+1.1
1,774,924	-				+2.0
1,774,929	+				+1.1
1,774,929	+				+0.6
1,774,929	+				-0.6
1,774,929	+				-0.9
1,774,929	+				-0.7
1,774,929	+				-0.9
1,774,929	+				+1.7
1,774,929	+				+0.3
1,774,929	+				-0.9
1,774,929	+				+0.1
1,774,929	+				+0.8
1,774,930	-				+0.9
1,774,930	-				-2.1
1,774,930	-				+1.2
1,774,930	-				+0.6
1,774,930	-				+0.9
1,774,930	-				+0.6
1,774,930	-				+1.7
1,774,930	-				-0.4
1,774,930	-				-0.5
1,774,930	-				-1.9
1,774,930	-				+0.4
1,774,930	-				-0.5
1,774,930	-				+0.1
1,774,930	-				+0.1
1,774,930	-				-0.8
1,774,930	-				+0.6
1,774,930	-				+0.6
1,774,930	-				-0.5
1,774,930	-				+0.5
1,774,930	-				-0.5
1,774,930	-				+1.2
1,774,930	-				-1.6
1,774,930	-				+1.2
1,774,931	+				+0.6
1,774,931	+				-2.2
1,774,931	+				+0.6
1,774,931	+				-0.6
1,774,931	+				-0.5
1,774,931	+				+1.1
1,774,932	-				+1.4
1,774,932	-				-0.6
1,774,932	-				+0.4
1,774,932	-				+1.1
1,774,932	-				+0.7
1,774,932	-				+2.0
1,774,953	+				-0.6
1,774,953	+				+1.8
1,775,012	+				+0.1
1,775,075	+				+0.6
1,775,095	-				+2.7
1,775,095	-				-1.0
1,775,115	+				+0.2
1,775,119	-				-0.1
1,775,149	+				-0.4
1,775,149	+				-0.0
1,775,149	+				+1.1
1,775,149	+				-1.2
1,775,161	+				+1.5
1,775,162	-				+0.1
1,775,162	-				+1.7
1,775,162	-				-0.9
1,775,167	+				-1.9
1,775,167	+				+1.1
1,775,167	+				+0.8
1,775,167	+				+0.1
1,775,167	+				+0.6
1,775,168	-				+0.6
1,775,196	-				-1.5
1,775,209	+				-1.0
1,775,278	+		IAI47_08375	0.11	-0.3
1,775,278	+		IAI47_08375	0.11	-0.5
1,775,366	+		IAI47_08375	0.26	+0.1
1,775,366	+		IAI47_08375	0.26	+0.5
1,775,366	+		IAI47_08375	0.26	+0.4
1,775,367	-		IAI47_08375	0.26	+0.5
1,775,367	-		IAI47_08375	0.26	+1.1
1,775,367	-		IAI47_08375	0.26	-0.2
1,775,367	-		IAI47_08375	0.26	-0.9
1,775,481	-		IAI47_08375	0.45	-0.4
1,775,481	-		IAI47_08375	0.45	-0.1
1,775,485	+		IAI47_08375	0.46	-0.4
1,775,486	-		IAI47_08375	0.46	-0.9
1,775,486	-		IAI47_08375	0.46	+0.2
1,775,486	-		IAI47_08375	0.46	+0.4
1,775,486	-		IAI47_08375	0.46	+0.1
1,775,486	-		IAI47_08375	0.46	-1.7
1,775,593	+		IAI47_08375	0.64	+0.1
1,775,594	-		IAI47_08375	0.64	-0.8
1,775,594	-		IAI47_08375	0.64	-1.5
1,775,635	+		IAI47_08375	0.71	-0.4
1,775,635	+		IAI47_08375	0.71	+0.6
1,775,635	+		IAI47_08375	0.71	-1.5
1,775,635	+		IAI47_08375	0.71	+0.6
1,775,635	+		IAI47_08375	0.71	+0.4
1,775,636	-		IAI47_08375	0.71	-0.5
1,775,636	-		IAI47_08375	0.71	+0.6
1,775,636	-		IAI47_08375	0.71	-1.2
1,775,714	+		IAI47_08375	0.85	-1.6
1,775,715	-		IAI47_08375	0.85	+0.4
1,775,802	+				-0.4
1,775,803	-				-0.9
1,775,803	-				-0.9
1,775,803	-				+0.5
1,775,863	+				-0.9
1,775,863	+				-1.0
1,775,918	+		IAI47_08380	0.10	-0.9
1,775,944	-		IAI47_08380	0.12	-0.6
1,775,994	+		IAI47_08380	0.17	-0.5
1,775,994	+		IAI47_08380	0.17	+0.5
1,775,994	+		IAI47_08380	0.17	+0.5
1,775,995	-		IAI47_08380	0.17	+0.4
1,775,995	-		IAI47_08380	0.17	+0.1
1,775,995	-		IAI47_08380	0.17	-1.0
1,776,035	-		IAI47_08380	0.20	-1.5
1,776,047	+		IAI47_08380	0.21	-0.3
1,776,048	-		IAI47_08380	0.22	-1.4
1,776,048	-		IAI47_08380	0.22	+0.6
1,776,048	-		IAI47_08380	0.22	-0.9
1,776,048	-		IAI47_08380	0.22	-1.2
1,776,076	-		IAI47_08380	0.24	+0.1
1,776,146	-		IAI47_08380	0.30	-1.6
1,776,146	-		IAI47_08380	0.30	-0.9
1,776,146	-		IAI47_08380	0.30	+0.7
1,776,149	+		IAI47_08380	0.30	-2.4
1,776,149	+		IAI47_08380	0.30	+0.1
1,776,150	-		IAI47_08380	0.30	-0.9
1,776,150	-		IAI47_08380	0.30	-0.2
1,776,209	+		IAI47_08380	0.36	+0.7
1,776,210	-		IAI47_08380	0.36	-1.3
1,776,210	-		IAI47_08380	0.36	-0.9
1,776,299	+		IAI47_08380	0.43	-0.3
1,776,300	-		IAI47_08380	0.44	-0.5
1,776,300	-		IAI47_08380	0.44	-1.4
1,776,300	-		IAI47_08380	0.44	-2.4
1,776,339	-		IAI47_08380	0.47	-0.8
1,776,339	-		IAI47_08380	0.47	-0.1
1,776,454	+		IAI47_08380	0.57	+0.6
1,776,455	-		IAI47_08380	0.57	+1.8
1,776,455	-		IAI47_08380	0.57	-0.2
1,776,464	+		IAI47_08380	0.58	-1.0
1,776,465	-		IAI47_08380	0.58	-1.0
1,776,597	+		IAI47_08380	0.69	-0.4
1,776,597	+		IAI47_08380	0.69	-0.1
1,776,598	-		IAI47_08380	0.70	-0.6
1,776,598	-		IAI47_08380	0.70	+0.7
1,776,717	+		IAI47_08380	0.80	+0.1
1,776,717	+		IAI47_08380	0.80	+0.3
1,776,718	-		IAI47_08380	0.80	-2.2
1,776,718	-		IAI47_08380	0.80	-0.5
1,776,882	+				-0.2
1,776,883	-				-1.9
1,776,895	+				-0.6
1,776,895	+				+1.5
1,776,895	+				-0.8
1,776,895	+				-1.5
1,776,895	+				-0.5
1,776,896	-				+1.7
1,776,896	-				-1.5
1,776,896	-				+0.1
1,776,896	-				+0.3
1,776,896	-				-1.2
1,776,896	-				-0.6
1,776,896	-				-0.0
1,776,921	-				-1.9
1,776,946	+				-1.6
1,776,946	+				+0.8
1,776,946	+				-0.1
1,776,946	+				-1.5
1,776,946	+				-1.9
1,776,947	-				-0.2
1,776,947	-				-1.2
1,776,950	+				+1.0
1,776,951	-				-1.5
1,776,951	-				-0.2
1,776,951	-				-0.9
1,776,971	-				-0.6
1,776,971	-				-1.5
1,776,985	+				-1.0
1,776,985	+				+0.1
1,776,985	+				+0.9
1,776,986	-				-0.9
1,776,986	-				-1.1
1,776,986	-				-1.5
1,776,986	-				+0.8
1,776,986	-				-0.7
1,777,018	+				+0.7
1,777,018	+				+1.1
1,777,018	+				+1.1
1,777,018	+				+1.9
1,777,018	+				+0.7
1,777,018	+				+0.1
1,777,018	+				+0.5
1,777,018	+				+0.2
1,777,018	+				+0.5
1,777,018	+				-0.0
1,777,019	-				+1.0
1,777,019	-				+1.3
1,777,019	-				+0.5
1,777,019	-				+1.5
1,777,199	+		IAI47_08385	0.22	+0.5
1,777,199	+		IAI47_08385	0.22	-0.9
1,777,200	-		IAI47_08385	0.22	-0.8
1,777,200	-		IAI47_08385	0.22	-0.2
1,777,230	+		IAI47_08385	0.26	-0.1
1,777,230	+		IAI47_08385	0.26	-0.1
1,777,231	-		IAI47_08385	0.26	-1.9
1,777,231	-		IAI47_08385	0.26	+0.6
1,777,232	+		IAI47_08385	0.27	-0.7
1,777,232	+		IAI47_08385	0.27	+0.6
1,777,233	-		IAI47_08385	0.27	+0.3
1,777,277	-		IAI47_08385	0.33	+0.7
1,777,331	+		IAI47_08385	0.40	+1.1
1,777,332	-		IAI47_08385	0.40	-1.6
1,777,358	+		IAI47_08385	0.43	-0.2
1,777,358	+		IAI47_08385	0.43	-0.5
1,777,442	-		IAI47_08385	0.54	-0.5
1,777,522	+		IAI47_08385	0.65	+0.1
1,777,522	+		IAI47_08385	0.65	+1.4
1,777,523	-		IAI47_08385	0.65	-0.7
1,777,523	-		IAI47_08385	0.65	-0.8
1,777,523	-		IAI47_08385	0.65	+1.1
1,777,544	+		IAI47_08385	0.68	-0.3
1,777,544	+		IAI47_08385	0.68	+0.2
1,777,544	+		IAI47_08385	0.68	+0.3
1,777,544	+		IAI47_08385	0.68	+0.1
1,777,544	+		IAI47_08385	0.68	+0.9
1,777,544	+		IAI47_08385	0.68	+2.7
1,777,544	+		IAI47_08385	0.68	+0.3
1,777,545	-		IAI47_08385	0.68	-0.6
1,777,545	-		IAI47_08385	0.68	+0.8
1,777,547	+		IAI47_08385	0.68	+1.1
1,777,547	+		IAI47_08385	0.68	+1.7
1,777,547	+		IAI47_08385	0.68	-0.6
1,777,548	-		IAI47_08385	0.69	-0.5
1,777,548	-		IAI47_08385	0.69	+0.5
1,777,548	-		IAI47_08385	0.69	+0.2
1,777,548	-		IAI47_08385	0.69	-1.5
1,777,713	+				+0.2
1,777,713	+				-1.9
1,777,720	+				-0.8
1,777,720	+				-1.4
1,777,721	-				-0.5
1,777,818	+				+0.2
1,777,839	+				+2.1
1,777,840	-				+3.5
1,777,852	+				+1.9
1,777,903	+				+1.5