Strain Fitness in Pantoea sp. MT58 around IAI47_05100

Experiment: Ying_sugar7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 3
1,076,535	+		IAI47_05095	0.14	-0.2
1,076,536	-		IAI47_05095	0.14	+1.2
1,076,536	-		IAI47_05095	0.14	-0.5
1,076,544	+		IAI47_05095	0.15	+0.2
1,076,544	+		IAI47_05095	0.15	+0.2
1,076,544	+		IAI47_05095	0.15	+0.8
1,076,544	+		IAI47_05095	0.15	-2.0
1,076,545	-		IAI47_05095	0.15	-0.7
1,076,565	+		IAI47_05095	0.17	+2.2
1,076,581	+		IAI47_05095	0.19	-2.5
1,076,592	+		IAI47_05095	0.20	+1.2
1,076,593	-		IAI47_05095	0.20	-0.1
1,076,593	-		IAI47_05095	0.20	+0.7
1,076,593	-		IAI47_05095	0.20	+1.2
1,076,593	-		IAI47_05095	0.20	-0.0
1,076,620	+		IAI47_05095	0.23	+1.8
1,076,621	-		IAI47_05095	0.23	+1.5
1,076,621	-		IAI47_05095	0.23	+2.0
1,076,621	-		IAI47_05095	0.23	+0.2
1,076,623	+		IAI47_05095	0.23	-0.4
1,076,623	+		IAI47_05095	0.23	-0.6
1,076,623	+		IAI47_05095	0.23	-0.4
1,076,623	+		IAI47_05095	0.23	+2.7
1,076,623	+		IAI47_05095	0.23	+0.2
1,076,623	+		IAI47_05095	0.23	+1.2
1,076,623	+		IAI47_05095	0.23	-1.8
1,076,623	+		IAI47_05095	0.23	-0.2
1,076,623	+		IAI47_05095	0.23	-0.4
1,076,624	-		IAI47_05095	0.23	+0.9
1,076,624	-		IAI47_05095	0.23	-2.2
1,076,624	-		IAI47_05095	0.23	+0.6
1,076,624	-		IAI47_05095	0.23	+0.0
1,076,624	-		IAI47_05095	0.23	-0.9
1,076,624	-		IAI47_05095	0.23	+0.9
1,076,624	-		IAI47_05095	0.23	+1.5
1,076,639	-		IAI47_05095	0.25	+0.4
1,076,639	-		IAI47_05095	0.25	+0.7
1,076,709	+		IAI47_05095	0.31	+0.0
1,076,709	+		IAI47_05095	0.31	+0.9
1,076,710	-		IAI47_05095	0.32	+0.2
1,076,710	-		IAI47_05095	0.32	+0.3
1,076,752	+		IAI47_05095	0.36	+0.2
1,076,753	-		IAI47_05095	0.36	+0.7
1,076,753	-		IAI47_05095	0.36	+0.2
1,076,886	+		IAI47_05095	0.49	-0.3
1,076,886	+		IAI47_05095	0.49	-0.8
1,076,886	+		IAI47_05095	0.49	+0.8
1,076,887	-		IAI47_05095	0.49	+0.6
1,076,887	-		IAI47_05095	0.49	-2.0
1,076,887	-		IAI47_05095	0.49	+1.0
1,076,887	-		IAI47_05095	0.49	-0.0
1,076,993	+		IAI47_05095	0.59	-1.8
1,076,993	+				+1.2
1,076,993	+		IAI47_05095	0.59	-0.8
1,076,993	+		IAI47_05095	0.59	-2.4
1,076,993	+		IAI47_05095	0.59	+0.7
1,076,993	+		IAI47_05095	0.59	+1.0
1,076,993	+		IAI47_05095	0.59	+0.4
1,076,993	+		IAI47_05095	0.59	+0.2
1,076,994	-		IAI47_05095	0.60	+0.9
1,076,994	-		IAI47_05095	0.60	-0.5
1,076,994	-		IAI47_05095	0.60	+0.1
1,076,994	-		IAI47_05095	0.60	-0.4
1,076,994	-		IAI47_05095	0.60	-0.3
1,076,994	-		IAI47_05095	0.60	+1.8
1,076,994	-		IAI47_05095	0.60	-0.7
1,077,027	+		IAI47_05095	0.63	+0.2
1,077,027	+		IAI47_05095	0.63	-0.7
1,077,028	-		IAI47_05095	0.63	+0.4
1,077,028	-		IAI47_05095	0.63	+1.2
1,077,028	-		IAI47_05095	0.63	+0.1
1,077,039	+		IAI47_05095	0.64	+1.0
1,077,039	+		IAI47_05095	0.64	-2.6
1,077,040	-		IAI47_05095	0.64	+0.1
1,077,040	-		IAI47_05095	0.64	+0.2
1,077,040	-		IAI47_05095	0.64	-1.2
1,077,040	-		IAI47_05095	0.64	-0.8
1,077,074	-		IAI47_05095	0.67	-0.2
1,077,086	-		IAI47_05095	0.69	-1.6
1,077,086	-		IAI47_05095	0.69	+0.9
1,077,086	-		IAI47_05095	0.69	-1.3
1,077,086	-		IAI47_05095	0.69	+1.5
1,077,093	+		IAI47_05095	0.69	-0.8
1,077,093	+		IAI47_05095	0.69	+1.2
1,077,093	+		IAI47_05095	0.69	+0.4
1,077,094	-		IAI47_05095	0.69	-0.3
1,077,094	-		IAI47_05095	0.69	+0.5
1,077,094	-		IAI47_05095	0.69	-1.8
1,077,114	+		IAI47_05095	0.71	+1.0
1,077,114	+		IAI47_05095	0.71	-0.1
1,077,114	+		IAI47_05095	0.71	+0.4
1,077,114	+		IAI47_05095	0.71	+2.4
1,077,115	-		IAI47_05095	0.71	+1.1
1,077,115	-		IAI47_05095	0.71	+3.5
1,077,115	-		IAI47_05095	0.71	+0.7
1,077,115	-		IAI47_05095	0.71	-0.6
1,077,119	+		IAI47_05095	0.72	-0.6
1,077,120	-		IAI47_05095	0.72	+0.2
1,077,129	+		IAI47_05095	0.73	-0.2
1,077,129	+		IAI47_05095	0.73	+0.0
1,077,130	-		IAI47_05095	0.73	+0.8
1,077,130	-		IAI47_05095	0.73	+0.9
1,077,130	-		IAI47_05095	0.73	+0.3
1,077,194	-		IAI47_05095	0.79	-0.5
1,077,376	+				-1.6
1,077,377	-				+0.1
1,077,378	+				-1.2
1,077,378	+				-0.4
1,077,378	+				-0.5
1,077,378	+				+0.4
1,077,378	+				-0.5
1,077,378	+				-3.3
1,077,378	+				+0.2
1,077,378	+				-1.8
1,077,379	-				+0.2
1,077,379	-				+1.1
1,077,379	-				+0.7
1,077,389	-				+0.7
1,077,389	-				-0.9
1,077,396	+				+0.9
1,077,397	-				+0.4
1,077,397	-				+3.1
1,077,397	-				+1.3
1,077,430	-				-1.4
1,077,430	-				-1.8
1,077,430	-				-0.3
1,077,430	-				-1.4
1,077,439	+				-0.2
1,077,439	+				+2.0
1,077,439	+				-2.0
1,077,439	+				+1.9
1,077,439	+				+0.6
1,077,440	-				-0.2
1,077,459	+				+1.5
1,077,459	+				+0.7
1,077,467	-				+1.1
1,077,556	+				-0.4
1,077,556	+				+0.2
1,077,557	-				+1.5
1,077,557	-				+1.4
1,077,675	+		IAI47_05100	0.11	-2.1
1,077,675	+		IAI47_05100	0.11	+0.9
1,077,675	+		IAI47_05100	0.11	-0.7
1,077,675	+		IAI47_05100	0.11	+0.3
1,077,675	+		IAI47_05100	0.11	-1.4
1,077,676	-		IAI47_05100	0.11	+1.1
1,077,676	-		IAI47_05100	0.11	-1.2
1,077,676	-		IAI47_05100	0.11	-1.0
1,077,676	-		IAI47_05100	0.11	-0.5
1,077,756	+		IAI47_05100	0.17	-0.8
1,077,757	-		IAI47_05100	0.17	-0.0
1,077,757	-		IAI47_05100	0.17	-0.2
1,077,757	-		IAI47_05100	0.17	-0.8
1,077,788	+		IAI47_05100	0.20	-0.6
1,077,789	-		IAI47_05100	0.20	+1.2
1,078,006	-		IAI47_05100	0.35	-0.1
1,078,006	-		IAI47_05100	0.35	-2.1
1,078,006	-		IAI47_05100	0.35	-1.5
1,078,007	+		IAI47_05100	0.35	+0.8
1,078,008	-		IAI47_05100	0.36	-0.1
1,078,008	-		IAI47_05100	0.36	-1.6
1,078,031	+		IAI47_05100	0.37	+0.5
1,078,031	+		IAI47_05100	0.37	-0.6
1,078,031	+		IAI47_05100	0.37	+0.6
1,078,032	-		IAI47_05100	0.37	+0.6
1,078,032	-		IAI47_05100	0.37	+2.0
1,078,032	-		IAI47_05100	0.37	-1.8
1,078,032	-		IAI47_05100	0.37	-0.8
1,078,034	+		IAI47_05100	0.37	+0.7
1,078,034	+		IAI47_05100	0.37	+0.7
1,078,034	+		IAI47_05100	0.37	+0.2
1,078,034	+		IAI47_05100	0.37	+1.4
1,078,034	+		IAI47_05100	0.37	-0.4
1,078,034	+		IAI47_05100	0.37	+0.6
1,078,035	-		IAI47_05100	0.37	+1.1
1,078,035	-		IAI47_05100	0.37	-2.1
1,078,035	-		IAI47_05100	0.37	+0.5
1,078,035	-		IAI47_05100	0.37	-0.8
1,078,131	+		IAI47_05100	0.44	-0.1
1,078,132	-		IAI47_05100	0.45	+1.5
1,078,141	+		IAI47_05100	0.45	+2.4
1,078,162	+		IAI47_05100	0.47	-0.8
1,078,163	-		IAI47_05100	0.47	+0.2
1,078,163	-		IAI47_05100	0.47	-1.0
1,078,291	+		IAI47_05100	0.56	-2.1
1,078,291	+		IAI47_05100	0.56	-1.4
1,078,291	+		IAI47_05100	0.56	-1.2
1,078,292	-		IAI47_05100	0.56	+0.2
1,078,380	-		IAI47_05100	0.63	+0.2
1,078,423	+		IAI47_05100	0.66	+1.6
1,078,423	+		IAI47_05100	0.66	-0.1
1,078,423	+		IAI47_05100	0.66	-0.8
1,078,424	-		IAI47_05100	0.66	+0.8
1,078,462	-		IAI47_05100	0.69	+0.5
1,078,500	+		IAI47_05100	0.71	+0.2
1,078,500	+		IAI47_05100	0.71	+1.0
1,078,500	+		IAI47_05100	0.71	+0.0
1,078,500	+		IAI47_05100	0.71	-2.4
1,078,500	+		IAI47_05100	0.71	-0.8
1,078,500	+		IAI47_05100	0.71	-2.1
1,078,500	+		IAI47_05100	0.71	-1.3
1,078,500	+		IAI47_05100	0.71	-0.4
1,078,501	-		IAI47_05100	0.71	-0.8
1,078,501	-		IAI47_05100	0.71	+1.2
1,078,501	-		IAI47_05100	0.71	-1.1
1,078,501	-		IAI47_05100	0.71	-0.4
1,078,501	-		IAI47_05100	0.71	+2.2
1,078,610	+		IAI47_05100	0.79	-0.8
1,078,611	-		IAI47_05100	0.79	-0.8
1,078,611	-		IAI47_05100	0.79	+0.2
1,078,628	+		IAI47_05100	0.81	-0.3
1,078,628	+		IAI47_05100	0.81	-0.4
1,078,628	+		IAI47_05100	0.81	-0.4
1,078,628	+		IAI47_05100	0.81	-0.2
1,078,629	-		IAI47_05100	0.81	-0.9
1,078,629	-		IAI47_05100	0.81	-2.3
1,078,629	-		IAI47_05100	0.81	+0.5
1,078,629	-		IAI47_05100	0.81	-2.1
1,078,654	+		IAI47_05100	0.83	+0.3
1,078,655	-		IAI47_05100	0.83	+0.7
1,078,655	-		IAI47_05100	0.83	-1.9
1,078,751	+		IAI47_05100	0.90	+1.4
1,078,751	+		IAI47_05100	0.90	+0.0
1,078,752	-		IAI47_05100	0.90	-1.1
1,078,752	-		IAI47_05100	0.90	-2.4
1,078,752	-		IAI47_05100	0.90	-0.3
1,078,845	+				-0.5
1,078,845	+				+0.9
1,078,845	+				+0.4
1,078,845	+				+1.0
1,078,846	-				+0.5
1,078,846	-				-0.9
1,078,846	-				-0.1
1,078,863	+				+0.7
1,078,926	-				+1.4
1,078,939	+				+3.5
1,078,940	-				+0.2
1,078,940	-				-1.6
1,078,978	-				-0.4
1,079,006	+				-2.8
1,079,008	+				-0.8
1,079,008	+				-3.0
1,079,027	+				+1.0
1,079,027	+				-0.8
1,079,031	+				+0.6
1,079,031	+				+0.4
1,079,031	+				+1.4
1,079,055	+				-2.6
1,079,055	+				-0.8
1,079,190	+				-0.8