Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04625 and IAI47_04630 overlap by 4 nucleotides IAI47_04630 and IAI47_04635 overlap by 4 nucleotides IAI47_04635 and IAI47_04640 overlap by 1 nucleotides
IAI47_04625: IAI47_04625 - ribokinase, at 974,267 to 975,229
_04625
IAI47_04630: IAI47_04630 - allose kinase, at 975,226 to 976,122
_04630
IAI47_04635: IAI47_04635 - ribulose-phosphate 3-epimerase, at 976,119 to 976,811
_04635
IAI47_04640: IAI47_04640 - ABC transporter permease, at 976,811 to 977,860
_04640
Position (kb) 975
976
977 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 974.277 kb on - strand at 974.277 kb on - strand at 974.277 kb on - strand at 974.296 kb on + strand at 974.299 kb on + strand at 974.299 kb on + strand at 974.300 kb on - strand at 974.300 kb on - strand at 974.300 kb on - strand at 974.300 kb on - strand at 974.340 kb on + strand at 974.341 kb on - strand at 974.515 kb on + strand, within IAI47_04625 at 974.515 kb on + strand, within IAI47_04625 at 974.516 kb on - strand, within IAI47_04625 at 974.516 kb on - strand, within IAI47_04625 at 974.536 kb on + strand, within IAI47_04625 at 974.536 kb on + strand, within IAI47_04625 at 974.536 kb on + strand, within IAI47_04625 at 974.536 kb on + strand, within IAI47_04625 at 974.536 kb on + strand, within IAI47_04625 at 974.537 kb on - strand, within IAI47_04625 at 974.537 kb on - strand, within IAI47_04625 at 974.569 kb on + strand, within IAI47_04625 at 974.569 kb on + strand, within IAI47_04625 at 974.590 kb on + strand, within IAI47_04625 at 974.591 kb on - strand, within IAI47_04625 at 974.600 kb on + strand, within IAI47_04625 at 974.601 kb on - strand, within IAI47_04625 at 974.601 kb on - strand, within IAI47_04625 at 974.601 kb on - strand, within IAI47_04625 at 974.635 kb on + strand, within IAI47_04625 at 974.636 kb on - strand, within IAI47_04625 at 974.636 kb on - strand, within IAI47_04625 at 974.643 kb on - strand, within IAI47_04625 at 974.650 kb on + strand, within IAI47_04625 at 974.651 kb on - strand, within IAI47_04625 at 974.675 kb on - strand, within IAI47_04625 at 974.770 kb on + strand, within IAI47_04625 at 974.770 kb on + strand, within IAI47_04625 at 974.771 kb on - strand, within IAI47_04625 at 974.813 kb on + strand, within IAI47_04625 at 974.813 kb on + strand, within IAI47_04625 at 974.814 kb on - strand, within IAI47_04625 at 974.814 kb on - strand, within IAI47_04625 at 974.842 kb on + strand, within IAI47_04625 at 974.842 kb on + strand, within IAI47_04625 at 974.843 kb on - strand, within IAI47_04625 at 974.881 kb on + strand, within IAI47_04625 at 974.881 kb on + strand, within IAI47_04625 at 974.882 kb on - strand, within IAI47_04625 at 974.882 kb on - strand, within IAI47_04625 at 974.908 kb on + strand, within IAI47_04625 at 974.909 kb on - strand, within IAI47_04625 at 974.934 kb on + strand, within IAI47_04625 at 974.934 kb on + strand, within IAI47_04625 at 974.934 kb on + strand, within IAI47_04625 at 974.935 kb on - strand, within IAI47_04625 at 974.935 kb on - strand, within IAI47_04625 at 974.935 kb on - strand, within IAI47_04625 at 974.966 kb on - strand, within IAI47_04625 at 974.971 kb on + strand, within IAI47_04625 at 974.971 kb on + strand, within IAI47_04625 at 974.971 kb on + strand, within IAI47_04625 at 974.971 kb on + strand, within IAI47_04625 at 974.972 kb on - strand, within IAI47_04625 at 974.972 kb on - strand, within IAI47_04625 at 974.980 kb on + strand, within IAI47_04625 at 974.980 kb on + strand, within IAI47_04625 at 974.981 kb on - strand, within IAI47_04625 at 974.981 kb on - strand, within IAI47_04625 at 974.981 kb on - strand, within IAI47_04625 at 974.981 kb on - strand, within IAI47_04625 at 974.981 kb on - strand, within IAI47_04625 at 974.981 kb on - strand, within IAI47_04625 at 974.981 kb on - strand, within IAI47_04625 at 975.057 kb on + strand, within IAI47_04625 at 975.057 kb on + strand, within IAI47_04625 at 975.057 kb on + strand, within IAI47_04625 at 975.058 kb on - strand, within IAI47_04625 at 975.058 kb on - strand, within IAI47_04625 at 975.109 kb on + strand, within IAI47_04625 at 975.196 kb on + strand at 975.196 kb on + strand at 975.196 kb on + strand at 975.197 kb on - strand at 975.215 kb on + strand at 975.215 kb on + strand at 975.215 kb on + strand at 975.215 kb on + strand at 975.215 kb on + strand at 975.215 kb on + strand at 975.215 kb on + strand at 975.216 kb on - strand at 975.285 kb on - strand at 975.433 kb on + strand, within IAI47_04630 at 975.433 kb on + strand, within IAI47_04630 at 975.433 kb on + strand, within IAI47_04630 at 975.433 kb on + strand, within IAI47_04630 at 975.433 kb on + strand, within IAI47_04630 at 975.433 kb on + strand, within IAI47_04630 at 975.433 kb on + strand, within IAI47_04630 at 975.434 kb on - strand, within IAI47_04630 at 975.434 kb on - strand, within IAI47_04630 at 975.434 kb on - strand, within IAI47_04630 at 975.434 kb on - strand, within IAI47_04630 at 975.434 kb on - strand, within IAI47_04630 at 975.435 kb on + strand, within IAI47_04630 at 975.435 kb on + strand, within IAI47_04630 at 975.435 kb on + strand, within IAI47_04630 at 975.435 kb on + strand, within IAI47_04630 at 975.435 kb on + strand, within IAI47_04630 at 975.435 kb on + strand, within IAI47_04630 at 975.435 kb on + strand, within IAI47_04630 at 975.436 kb on - strand, within IAI47_04630 at 975.436 kb on - strand, within IAI47_04630 at 975.436 kb on - strand, within IAI47_04630 at 975.525 kb on + strand, within IAI47_04630 at 975.680 kb on + strand, within IAI47_04630 at 975.680 kb on + strand, within IAI47_04630 at 975.681 kb on - strand, within IAI47_04630 at 975.681 kb on - strand, within IAI47_04630 at 975.681 kb on - strand, within IAI47_04630 at 975.873 kb on + strand, within IAI47_04630 at 975.874 kb on - strand, within IAI47_04630 at 975.933 kb on + strand, within IAI47_04630 at 975.933 kb on + strand, within IAI47_04630 at 975.934 kb on - strand, within IAI47_04630 at 975.934 kb on - strand, within IAI47_04630 at 975.934 kb on - strand, within IAI47_04630 at 975.934 kb on - strand, within IAI47_04630 at 975.972 kb on + strand, within IAI47_04630 at 975.972 kb on + strand, within IAI47_04630 at 975.972 kb on + strand, within IAI47_04630 at 975.972 kb on + strand, within IAI47_04630 at 975.973 kb on - strand, within IAI47_04630 at 975.973 kb on - strand, within IAI47_04630 at 975.973 kb on - strand, within IAI47_04630 at 976.188 kb on + strand at 976.205 kb on + strand, within IAI47_04635 at 976.205 kb on + strand, within IAI47_04635 at 976.206 kb on - strand, within IAI47_04635 at 976.206 kb on - strand, within IAI47_04635 at 976.210 kb on - strand, within IAI47_04635 at 976.210 kb on - strand, within IAI47_04635 at 976.210 kb on - strand, within IAI47_04635 at 976.210 kb on - strand, within IAI47_04635 at 976.253 kb on + strand, within IAI47_04635 at 976.253 kb on + strand, within IAI47_04635 at 976.253 kb on + strand, within IAI47_04635 at 976.253 kb on + strand, within IAI47_04635 at 976.253 kb on + strand, within IAI47_04635 at 976.253 kb on + strand, within IAI47_04635 at 976.254 kb on - strand, within IAI47_04635 at 976.264 kb on + strand, within IAI47_04635 at 976.264 kb on + strand, within IAI47_04635 at 976.264 kb on + strand, within IAI47_04635 at 976.265 kb on - strand, within IAI47_04635 at 976.265 kb on - strand, within IAI47_04635 at 976.277 kb on + strand, within IAI47_04635 at 976.294 kb on + strand, within IAI47_04635 at 976.303 kb on + strand, within IAI47_04635 at 976.303 kb on + strand, within IAI47_04635 at 976.303 kb on + strand, within IAI47_04635 at 976.303 kb on + strand, within IAI47_04635 at 976.303 kb on + strand, within IAI47_04635 at 976.303 kb on + strand, within IAI47_04635 at 976.303 kb on + strand, within IAI47_04635 at 976.304 kb on - strand, within IAI47_04635 at 976.304 kb on - strand, within IAI47_04635 at 976.304 kb on - strand, within IAI47_04635 at 976.304 kb on - strand, within IAI47_04635 at 976.304 kb on - strand, within IAI47_04635 at 976.304 kb on - strand, within IAI47_04635 at 976.304 kb on - strand, within IAI47_04635 at 976.304 kb on - strand, within IAI47_04635 at 976.309 kb on + strand, within IAI47_04635 at 976.368 kb on - strand, within IAI47_04635 at 976.429 kb on - strand, within IAI47_04635 at 976.430 kb on + strand, within IAI47_04635 at 976.430 kb on + strand, within IAI47_04635 at 976.431 kb on - strand, within IAI47_04635 at 976.431 kb on - strand, within IAI47_04635 at 976.431 kb on - strand, within IAI47_04635 at 976.431 kb on - strand, within IAI47_04635 at 976.432 kb on + strand, within IAI47_04635 at 976.432 kb on + strand, within IAI47_04635 at 976.432 kb on + strand, within IAI47_04635 at 976.432 kb on + strand, within IAI47_04635 at 976.432 kb on + strand, within IAI47_04635 at 976.432 kb on + strand, within IAI47_04635 at 976.432 kb on + strand, within IAI47_04635 at 976.432 kb on + strand, within IAI47_04635 at 976.433 kb on - strand, within IAI47_04635 at 976.433 kb on - strand, within IAI47_04635 at 976.433 kb on - strand, within IAI47_04635 at 976.433 kb on - strand, within IAI47_04635 at 976.433 kb on - strand, within IAI47_04635 at 976.433 kb on - strand, within IAI47_04635 at 976.433 kb on - strand, within IAI47_04635 at 976.433 kb on - strand, within IAI47_04635 at 976.433 kb on - strand, within IAI47_04635 at 976.442 kb on + strand, within IAI47_04635 at 976.442 kb on + strand, within IAI47_04635 at 976.442 kb on + strand, within IAI47_04635 at 976.442 kb on + strand, within IAI47_04635 at 976.442 kb on + strand, within IAI47_04635 at 976.442 kb on + strand, within IAI47_04635 at 976.442 kb on + strand, within IAI47_04635 at 976.442 kb on + strand, within IAI47_04635 at 976.442 kb on + strand, within IAI47_04635 at 976.442 kb on + strand, within IAI47_04635 at 976.442 kb on + strand, within IAI47_04635 at 976.443 kb on - strand, within IAI47_04635 at 976.443 kb on - strand, within IAI47_04635 at 976.443 kb on - strand, within IAI47_04635 at 976.443 kb on - strand, within IAI47_04635 at 976.444 kb on + strand, within IAI47_04635 at 976.444 kb on + strand, within IAI47_04635 at 976.444 kb on + strand, within IAI47_04635 at 976.444 kb on + strand, within IAI47_04635 at 976.444 kb on + strand, within IAI47_04635 at 976.444 kb on + strand, within IAI47_04635 at 976.444 kb on + strand, within IAI47_04635 at 976.445 kb on - strand, within IAI47_04635 at 976.445 kb on - strand, within IAI47_04635 at 976.445 kb on - strand, within IAI47_04635 at 976.445 kb on - strand, within IAI47_04635 at 976.445 kb on - strand, within IAI47_04635 at 976.492 kb on + strand, within IAI47_04635 at 976.493 kb on - strand, within IAI47_04635 at 976.493 kb on - strand, within IAI47_04635 at 976.493 kb on - strand, within IAI47_04635 at 976.508 kb on + strand, within IAI47_04635 at 976.508 kb on + strand, within IAI47_04635 at 976.509 kb on - strand, within IAI47_04635 at 976.556 kb on + strand, within IAI47_04635 at 976.556 kb on + strand, within IAI47_04635 at 976.556 kb on + strand, within IAI47_04635 at 976.556 kb on + strand, within IAI47_04635 at 976.556 kb on + strand, within IAI47_04635 at 976.556 kb on + strand, within IAI47_04635 at 976.556 kb on + strand, within IAI47_04635 at 976.556 kb on + strand, within IAI47_04635 at 976.556 kb on + strand, within IAI47_04635 at 976.556 kb on + strand, within IAI47_04635 at 976.556 kb on + strand, within IAI47_04635 at 976.556 kb on + strand, within IAI47_04635 at 976.556 kb on + strand, within IAI47_04635 at 976.557 kb on - strand, within IAI47_04635 at 976.557 kb on - strand, within IAI47_04635 at 976.557 kb on - strand, within IAI47_04635 at 976.557 kb on - strand, within IAI47_04635 at 976.557 kb on - strand, within IAI47_04635 at 976.557 kb on - strand, within IAI47_04635 at 976.557 kb on - strand, within IAI47_04635 at 976.557 kb on - strand, within IAI47_04635 at 976.557 kb on - strand, within IAI47_04635 at 976.557 kb on - strand, within IAI47_04635 at 976.557 kb on - strand, within IAI47_04635 at 976.557 kb on - strand, within IAI47_04635 at 976.558 kb on + strand, within IAI47_04635 at 976.558 kb on + strand, within IAI47_04635 at 976.558 kb on + strand, within IAI47_04635 at 976.559 kb on - strand, within IAI47_04635 at 976.559 kb on - strand, within IAI47_04635 at 976.559 kb on - strand, within IAI47_04635 at 976.559 kb on - strand, within IAI47_04635 at 976.559 kb on - strand, within IAI47_04635 at 976.559 kb on - strand, within IAI47_04635 at 976.559 kb on - strand, within IAI47_04635 at 976.595 kb on + strand, within IAI47_04635 at 976.680 kb on + strand, within IAI47_04635 at 976.680 kb on + strand, within IAI47_04635 at 976.680 kb on + strand, within IAI47_04635 at 976.680 kb on + strand, within IAI47_04635 at 976.680 kb on + strand, within IAI47_04635 at 976.680 kb on + strand, within IAI47_04635 at 976.680 kb on + strand, within IAI47_04635 at 976.681 kb on - strand, within IAI47_04635 at 976.682 kb on + strand, within IAI47_04635 at 976.682 kb on + strand, within IAI47_04635 at 976.693 kb on + strand, within IAI47_04635 at 976.693 kb on + strand, within IAI47_04635 at 976.693 kb on + strand, within IAI47_04635 at 976.693 kb on + strand, within IAI47_04635 at 976.693 kb on + strand, within IAI47_04635 at 976.693 kb on + strand, within IAI47_04635 at 976.694 kb on - strand, within IAI47_04635 at 976.749 kb on + strand at 976.750 kb on - strand at 976.778 kb on + strand at 976.778 kb on + strand at 976.778 kb on + strand at 976.778 kb on + strand at 976.779 kb on - strand at 976.779 kb on - strand at 976.779 kb on - strand at 976.779 kb on - strand at 976.779 kb on - strand at 976.779 kb on - strand at 976.779 kb on - strand at 976.779 kb on - strand at 976.779 kb on - strand at 976.779 kb on - strand at 976.806 kb on - strand at 976.814 kb on + strand at 976.815 kb on - strand at 976.815 kb on - strand at 976.815 kb on - strand at 976.815 kb on - strand at 976.815 kb on - strand at 976.815 kb on - strand at 976.840 kb on + strand at 976.840 kb on + strand at 976.840 kb on + strand at 976.840 kb on + strand at 976.840 kb on + strand at 976.841 kb on - strand at 976.841 kb on - strand at 976.868 kb on + strand at 976.868 kb on + strand at 976.868 kb on + strand at 976.897 kb on + strand at 976.898 kb on - strand at 976.907 kb on - strand at 976.928 kb on + strand, within IAI47_04640 at 976.929 kb on - strand, within IAI47_04640 at 976.929 kb on - strand, within IAI47_04640 at 976.929 kb on - strand, within IAI47_04640 at 976.994 kb on + strand, within IAI47_04640 at 976.994 kb on + strand, within IAI47_04640 at 976.994 kb on + strand, within IAI47_04640 at 976.994 kb on + strand, within IAI47_04640 at 976.995 kb on - strand, within IAI47_04640 at 977.081 kb on + strand, within IAI47_04640 at 977.081 kb on + strand, within IAI47_04640 at 977.081 kb on + strand, within IAI47_04640 at 977.082 kb on - strand, within IAI47_04640 at 977.082 kb on - strand, within IAI47_04640 at 977.082 kb on - strand, within IAI47_04640 at 977.091 kb on - strand, within IAI47_04640 at 977.097 kb on + strand, within IAI47_04640 at 977.097 kb on + strand, within IAI47_04640 at 977.097 kb on + strand, within IAI47_04640 at 977.097 kb on + strand, within IAI47_04640 at 977.097 kb on + strand, within IAI47_04640 at 977.097 kb on + strand, within IAI47_04640 at 977.097 kb on + strand, within IAI47_04640 at 977.097 kb on + strand, within IAI47_04640 at 977.097 kb on + strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 974,277 - +0.5 974,277 - -0.5 974,277 - -0.1 974,296 + +2.5 974,299 + -0.4 974,299 + +0.2 974,300 - +1.2 974,300 - +1.5 974,300 - -0.2 974,300 - +1.3 974,340 + -0.1 974,341 - -0.2 974,515 + IAI47_04625 0.26 +0.5 974,515 + IAI47_04625 0.26 +0.2 974,516 - IAI47_04625 0.26 +1.0 974,516 - IAI47_04625 0.26 -0.8 974,536 + IAI47_04625 0.28 -0.2 974,536 + IAI47_04625 0.28 -0.3 974,536 + IAI47_04625 0.28 -3.1 974,536 + IAI47_04625 0.28 +1.8 974,536 + IAI47_04625 0.28 +0.0 974,537 - IAI47_04625 0.28 +0.2 974,537 - IAI47_04625 0.28 -0.2 974,569 + IAI47_04625 0.31 -1.6 974,569 + IAI47_04625 0.31 -0.4 974,590 + IAI47_04625 0.34 +0.1 974,591 - IAI47_04625 0.34 -1.1 974,600 + IAI47_04625 0.35 -0.2 974,601 - IAI47_04625 0.35 -0.2 974,601 - IAI47_04625 0.35 -0.4 974,601 - IAI47_04625 0.35 +0.2 974,635 + IAI47_04625 0.38 -0.6 974,636 - IAI47_04625 0.38 +1.0 974,636 - IAI47_04625 0.38 +1.5 974,643 - IAI47_04625 0.39 +0.8 974,650 + IAI47_04625 0.40 -0.8 974,651 - IAI47_04625 0.40 +2.5 974,675 - IAI47_04625 0.42 +0.7 974,770 + IAI47_04625 0.52 -0.6 974,770 + IAI47_04625 0.52 +0.5 974,771 - IAI47_04625 0.52 +0.3 974,813 + IAI47_04625 0.57 -1.1 974,813 + IAI47_04625 0.57 -0.5 974,814 - IAI47_04625 0.57 -0.5 974,814 - IAI47_04625 0.57 -1.3 974,842 + IAI47_04625 0.60 +0.3 974,842 + IAI47_04625 0.60 -0.5 974,843 - IAI47_04625 0.60 -1.8 974,881 + IAI47_04625 0.64 +0.3 974,881 + IAI47_04625 0.64 +0.3 974,882 - IAI47_04625 0.64 -0.8 974,882 - IAI47_04625 0.64 +0.7 974,908 + IAI47_04625 0.67 +0.7 974,909 - IAI47_04625 0.67 +0.7 974,934 + IAI47_04625 0.69 -1.0 974,934 + IAI47_04625 0.69 +0.3 974,934 + IAI47_04625 0.69 -0.1 974,935 - IAI47_04625 0.69 -0.7 974,935 - IAI47_04625 0.69 +0.7 974,935 - IAI47_04625 0.69 -0.5 974,966 - IAI47_04625 0.73 +0.9 974,971 + IAI47_04625 0.73 -1.4 974,971 + IAI47_04625 0.73 -1.1 974,971 + IAI47_04625 0.73 -0.3 974,971 + IAI47_04625 0.73 +3.0 974,972 - IAI47_04625 0.73 -0.1 974,972 - IAI47_04625 0.73 +2.2 974,980 + IAI47_04625 0.74 -0.1 974,980 + IAI47_04625 0.74 -0.8 974,981 - IAI47_04625 0.74 +0.4 974,981 - IAI47_04625 0.74 -0.2 974,981 - IAI47_04625 0.74 +0.5 974,981 - IAI47_04625 0.74 -1.6 974,981 - IAI47_04625 0.74 -1.2 974,981 - IAI47_04625 0.74 -1.0 974,981 - IAI47_04625 0.74 +1.2 975,057 + IAI47_04625 0.82 +0.2 975,057 + IAI47_04625 0.82 +1.3 975,057 + IAI47_04625 0.82 +0.4 975,058 - IAI47_04625 0.82 +1.0 975,058 - IAI47_04625 0.82 -0.8 975,109 + IAI47_04625 0.87 +0.6 975,196 + +2.0 975,196 + -2.2 975,196 + -1.8 975,197 - +0.9 975,215 + +0.7 975,215 + +1.2 975,215 + -1.4 975,215 + +0.2 975,215 + +1.1 975,215 + -0.8 975,215 + -1.9 975,216 - -0.4 975,285 - -0.5 975,433 + IAI47_04630 0.23 -0.6 975,433 + IAI47_04630 0.23 -1.8 975,433 + IAI47_04630 0.23 -1.0 975,433 + IAI47_04630 0.23 -0.4 975,433 + IAI47_04630 0.23 -3.8 975,433 + IAI47_04630 0.23 +0.4 975,433 + IAI47_04630 0.23 -1.4 975,434 - IAI47_04630 0.23 +0.2 975,434 - IAI47_04630 0.23 +1.2 975,434 - IAI47_04630 0.23 -0.5 975,434 - IAI47_04630 0.23 +0.4 975,434 - IAI47_04630 0.23 +0.5 975,435 + IAI47_04630 0.23 +0.5 975,435 + IAI47_04630 0.23 +1.3 975,435 + IAI47_04630 0.23 -1.0 975,435 + IAI47_04630 0.23 -1.0 975,435 + IAI47_04630 0.23 -0.0 975,435 + IAI47_04630 0.23 -0.5 975,435 + IAI47_04630 0.23 +0.8 975,436 - 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Or see this region's nucleotide sequence