Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04495 and IAI47_04500 are separated by 16 nucleotides IAI47_04500 and IAI47_04505 are separated by 150 nucleotides IAI47_04505 and IAI47_04510 are separated by 301 nucleotides
IAI47_04495: IAI47_04495 - multidrug efflux MFS transporter permease subunit EmrB, at 945,819 to 947,354
_04495
IAI47_04500: IAI47_04500 - multidrug efflux MFS transporter periplasmic adaptor subunit EmrA, at 947,371 to 948,543
_04500
IAI47_04505: IAI47_04505 - transcriptional repressor MprA, at 948,694 to 949,224
_04505
IAI47_04510: IAI47_04510 - MFS transporter, at 949,526 to 950,713
_04510
Position (kb) 947
948
949 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 946.371 kb on - strand, within IAI47_04495 at 946.371 kb on - strand, within IAI47_04495 at 946.411 kb on - strand, within IAI47_04495 at 946.411 kb on - strand, within IAI47_04495 at 946.411 kb on - strand, within IAI47_04495 at 946.419 kb on + strand, within IAI47_04495 at 946.454 kb on + strand, within IAI47_04495 at 946.454 kb on + strand, within IAI47_04495 at 946.454 kb on + strand, within IAI47_04495 at 946.455 kb on - strand, within IAI47_04495 at 946.456 kb on + strand, within IAI47_04495 at 946.462 kb on + strand, within IAI47_04495 at 946.462 kb on + strand, within IAI47_04495 at 946.463 kb on - strand, within IAI47_04495 at 946.463 kb on - strand, within IAI47_04495 at 946.495 kb on - strand, within IAI47_04495 at 946.495 kb on - strand, within IAI47_04495 at 946.495 kb on - strand, within IAI47_04495 at 946.508 kb on - strand, within IAI47_04495 at 946.516 kb on + strand, within IAI47_04495 at 946.516 kb on + strand, within IAI47_04495 at 946.516 kb on + strand, within IAI47_04495 at 946.516 kb on + strand, within IAI47_04495 at 946.517 kb on - strand, within IAI47_04495 at 946.517 kb on - strand, within IAI47_04495 at 946.517 kb on - strand, within IAI47_04495 at 946.517 kb on - strand, within IAI47_04495 at 946.517 kb on - strand, within IAI47_04495 at 946.517 kb on - strand, within IAI47_04495 at 946.547 kb on + strand, within IAI47_04495 at 946.547 kb on + strand, within IAI47_04495 at 946.548 kb on - strand, within IAI47_04495 at 946.548 kb on - strand, within IAI47_04495 at 946.562 kb on + strand, within IAI47_04495 at 946.562 kb on + strand, within IAI47_04495 at 946.563 kb on - strand, within IAI47_04495 at 946.563 kb on - strand, within IAI47_04495 at 946.648 kb on - strand, within IAI47_04495 at 946.648 kb on - strand, within IAI47_04495 at 946.655 kb on + strand, within IAI47_04495 at 946.656 kb on - strand, within IAI47_04495 at 946.670 kb on + strand, within IAI47_04495 at 946.710 kb on + strand, within IAI47_04495 at 946.711 kb on - strand, within IAI47_04495 at 946.711 kb on - strand, within IAI47_04495 at 946.776 kb on - strand, within IAI47_04495 at 946.809 kb on + strand, within IAI47_04495 at 946.810 kb on - strand, within IAI47_04495 at 946.810 kb on - strand, within IAI47_04495 at 946.810 kb on - strand, within IAI47_04495 at 946.810 kb on - strand, within IAI47_04495 at 946.841 kb on + strand, within IAI47_04495 at 946.841 kb on + strand, within IAI47_04495 at 946.841 kb on + strand, within IAI47_04495 at 946.842 kb on - strand, within IAI47_04495 at 946.842 kb on - strand, within IAI47_04495 at 946.864 kb on + strand, within IAI47_04495 at 946.864 kb on + strand, within IAI47_04495 at 946.864 kb on + strand, within IAI47_04495 at 946.864 kb on + strand, within IAI47_04495 at 946.864 kb on + strand, within IAI47_04495 at 946.864 kb on + strand, within IAI47_04495 at 946.864 kb on + strand, within IAI47_04495 at 946.864 kb on + strand, within IAI47_04495 at 946.865 kb on - strand, within IAI47_04495 at 946.865 kb on - strand, within IAI47_04495 at 946.865 kb on - strand, within IAI47_04495 at 946.865 kb on - strand, within IAI47_04495 at 946.865 kb on - strand, within IAI47_04495 at 946.865 kb on - strand, within IAI47_04495 at 946.868 kb on + strand, within IAI47_04495 at 946.868 kb on + strand, within IAI47_04495 at 946.868 kb on + strand, within IAI47_04495 at 946.868 kb on + strand, within IAI47_04495 at 946.869 kb on - strand, within IAI47_04495 at 946.869 kb on - strand, within IAI47_04495 at 946.869 kb on - strand, within IAI47_04495 at 946.966 kb on + strand, within IAI47_04495 at 946.967 kb on - strand, within IAI47_04495 at 946.967 kb on - strand, within IAI47_04495 at 947.058 kb on - strand, within IAI47_04495 at 947.066 kb on + strand, within IAI47_04495 at 947.066 kb on + strand, within IAI47_04495 at 947.066 kb on + strand, within IAI47_04495 at 947.066 kb on + strand, within IAI47_04495 at 947.066 kb on + strand, within IAI47_04495 at 947.066 kb on + strand, within IAI47_04495 at 947.067 kb on - strand, within IAI47_04495 at 947.067 kb on - strand, within IAI47_04495 at 947.067 kb on - strand, within IAI47_04495 at 947.067 kb on - strand, within IAI47_04495 at 947.067 kb on - strand, within IAI47_04495 at 947.197 kb on - strand, within IAI47_04495 at 947.204 kb on + strand at 947.243 kb on + strand at 947.243 kb on + strand at 947.243 kb on + strand at 947.244 kb on - strand at 947.355 kb on + strand at 947.355 kb on + strand at 947.356 kb on - strand at 947.450 kb on + strand at 947.451 kb on - strand at 947.451 kb on - strand at 947.451 kb on - strand at 947.476 kb on - strand at 947.505 kb on + strand, within IAI47_04500 at 947.613 kb on + strand, within IAI47_04500 at 947.620 kb on - strand, within IAI47_04500 at 947.690 kb on + strand, within IAI47_04500 at 947.691 kb on - strand, within IAI47_04500 at 947.691 kb on - strand, within IAI47_04500 at 947.708 kb on + strand, within IAI47_04500 at 947.708 kb on + strand, within IAI47_04500 at 947.708 kb on + strand, within IAI47_04500 at 947.708 kb on + strand, within IAI47_04500 at 947.708 kb on + strand, within IAI47_04500 at 947.708 kb on + strand, within IAI47_04500 at 947.708 kb on + strand, within IAI47_04500 at 947.709 kb on - strand, within IAI47_04500 at 947.709 kb on - strand, within IAI47_04500 at 947.709 kb on - strand, within IAI47_04500 at 947.709 kb on - strand, within IAI47_04500 at 947.709 kb on - strand, within IAI47_04500 at 947.709 kb on - strand, within IAI47_04500 at 947.709 kb on - strand, within IAI47_04500 at 947.709 kb on - strand, within IAI47_04500 at 947.746 kb on + strand, within IAI47_04500 at 947.746 kb on + strand, within IAI47_04500 at 947.747 kb on - strand, within IAI47_04500 at 947.747 kb on - strand, within IAI47_04500 at 947.747 kb on - strand, within IAI47_04500 at 947.973 kb on + strand, within IAI47_04500 at 947.974 kb on - strand, within IAI47_04500 at 947.974 kb on - strand, within IAI47_04500 at 947.994 kb on + strand, within IAI47_04500 at 947.995 kb on - strand, within IAI47_04500 at 948.000 kb on + strand, within IAI47_04500 at 948.000 kb on + strand, within IAI47_04500 at 948.000 kb on + strand, within IAI47_04500 at 948.000 kb on + strand, within IAI47_04500 at 948.000 kb on + strand, within IAI47_04500 at 948.000 kb on + strand, within IAI47_04500 at 948.000 kb on + strand, within IAI47_04500 at 948.000 kb on + strand, within IAI47_04500 at 948.000 kb on + strand, within IAI47_04500 at 948.001 kb on - strand, within IAI47_04500 at 948.001 kb on - strand, within IAI47_04500 at 948.001 kb on - strand, within IAI47_04500 at 948.001 kb on - strand, within IAI47_04500 at 948.001 kb on - strand, within IAI47_04500 at 948.001 kb on - strand, within IAI47_04500 at 948.001 kb on - strand, within IAI47_04500 at 948.001 kb on - strand, within IAI47_04500 at 948.002 kb on + strand, within IAI47_04500 at 948.002 kb on + strand, within IAI47_04500 at 948.002 kb on + strand, within IAI47_04500 at 948.003 kb on - strand, within IAI47_04500 at 948.003 kb on - strand, within IAI47_04500 at 948.003 kb on - strand, within IAI47_04500 at 948.003 kb on - strand, within IAI47_04500 at 948.034 kb on - strand, within IAI47_04500 at 948.087 kb on + strand, within IAI47_04500 at 948.091 kb on + strand, within IAI47_04500 at 948.091 kb on + strand, within IAI47_04500 at 948.091 kb on + strand, within IAI47_04500 at 948.091 kb on + strand, within IAI47_04500 at 948.091 kb on + strand, within IAI47_04500 at 948.091 kb on + strand, within IAI47_04500 at 948.092 kb on - strand, within IAI47_04500 at 948.092 kb on - strand, within IAI47_04500 at 948.092 kb on - strand, within IAI47_04500 at 948.092 kb on - strand, within IAI47_04500 at 948.092 kb on - strand, within IAI47_04500 at 948.092 kb on - strand, within IAI47_04500 at 948.092 kb on - strand, within IAI47_04500 at 948.092 kb on - strand, within IAI47_04500 at 948.156 kb on + strand, within IAI47_04500 at 948.156 kb on + strand, within IAI47_04500 at 948.156 kb on + strand, within IAI47_04500 at 948.157 kb on - strand, within IAI47_04500 at 948.157 kb on - strand, within IAI47_04500 at 948.157 kb on - strand, within IAI47_04500 at 948.157 kb on - strand, within IAI47_04500 at 948.170 kb on + strand, within IAI47_04500 at 948.170 kb on + strand, within IAI47_04500 at 948.171 kb on - strand, within IAI47_04500 at 948.264 kb on + strand, within IAI47_04500 at 948.307 kb on - strand, within IAI47_04500 at 948.366 kb on + strand, within IAI47_04500 at 948.366 kb on + strand, within IAI47_04500 at 948.366 kb on + strand, within IAI47_04500 at 948.366 kb on + strand, within IAI47_04500 at 948.366 kb on + strand, within IAI47_04500 at 948.367 kb on - strand, within IAI47_04500 at 948.377 kb on + strand, within IAI47_04500 at 948.377 kb on + strand, within IAI47_04500 at 948.377 kb on + strand, within IAI47_04500 at 948.377 kb on + strand, within IAI47_04500 at 948.378 kb on - strand, within IAI47_04500 at 948.378 kb on - strand, within IAI47_04500 at 948.423 kb on - strand, within IAI47_04500 at 948.423 kb on - strand, within IAI47_04500 at 948.439 kb on - strand at 948.439 kb on - strand at 948.439 kb on - strand at 948.439 kb on - strand at 948.499 kb on - strand at 948.567 kb on - strand at 948.622 kb on + strand at 948.623 kb on - strand at 948.623 kb on - strand at 948.638 kb on - strand at 948.650 kb on + strand at 948.651 kb on - strand at 948.655 kb on + strand at 948.686 kb on + strand at 948.686 kb on + strand at 948.686 kb on + strand at 948.686 kb on + strand at 948.686 kb on + strand at 948.686 kb on + strand at 948.687 kb on - strand at 948.687 kb on - strand at 948.687 kb on - strand at 948.687 kb on - strand at 948.687 kb on - strand at 948.687 kb on - strand at 948.692 kb on + strand at 948.692 kb on + strand at 948.695 kb on + strand at 948.695 kb on + strand at 948.696 kb on - strand at 948.696 kb on - strand at 948.747 kb on + strand, within IAI47_04505 at 948.748 kb on - strand, within IAI47_04505 at 948.756 kb on + strand, within IAI47_04505 at 948.763 kb on - strand, within IAI47_04505 at 948.765 kb on + strand, within IAI47_04505 at 948.765 kb on + strand, within IAI47_04505 at 948.766 kb on - strand, within IAI47_04505 at 948.766 kb on - strand, within IAI47_04505 at 948.766 kb on - strand, within IAI47_04505 at 948.766 kb on - strand, within IAI47_04505 at 948.766 kb on - strand, within IAI47_04505 at 948.766 kb on - strand, within IAI47_04505 at 948.812 kb on + strand, within IAI47_04505 at 948.812 kb on + strand, within IAI47_04505 at 948.812 kb on + strand, within IAI47_04505 at 948.812 kb on + strand, within IAI47_04505 at 948.813 kb on - strand, within IAI47_04505 at 948.813 kb on - strand, within IAI47_04505 at 948.813 kb on - strand, within IAI47_04505 at 948.868 kb on - strand, within IAI47_04505 at 949.038 kb on + strand, within IAI47_04505 at 949.038 kb on + strand, within IAI47_04505 at 949.090 kb on - strand, within IAI47_04505 at 949.093 kb on - strand, within IAI47_04505 at 949.093 kb on - strand, within IAI47_04505 at 949.119 kb on + strand, within IAI47_04505 at 949.119 kb on + strand, within IAI47_04505 at 949.119 kb on + strand, within IAI47_04505 at 949.119 kb on + strand, within IAI47_04505 at 949.120 kb on - strand, within IAI47_04505 at 949.120 kb on - strand, within IAI47_04505 at 949.120 kb on - strand, within IAI47_04505 at 949.120 kb on - strand, within IAI47_04505 at 949.120 kb on - strand, within IAI47_04505 at 949.120 kb on - strand, within IAI47_04505 at 949.120 kb on - strand, within IAI47_04505 at 949.120 kb on - strand, within IAI47_04505 at 949.120 kb on - strand, within IAI47_04505 at 949.120 kb on - strand, within IAI47_04505 at 949.120 kb on - strand, within IAI47_04505 at 949.125 kb on + strand, within IAI47_04505 at 949.125 kb on + strand, within IAI47_04505 at 949.126 kb on - strand, within IAI47_04505 at 949.126 kb on - strand, within IAI47_04505 at 949.143 kb on + strand, within IAI47_04505 at 949.167 kb on + strand, within IAI47_04505 at 949.189 kb on + strand at 949.189 kb on + strand at 949.189 kb on + strand at 949.190 kb on - strand at 949.240 kb on + strand at 949.240 kb on + strand at 949.241 kb on - strand at 949.253 kb on + strand at 949.254 kb on - strand at 949.254 kb on - strand at 949.254 kb on - strand at 949.256 kb on - strand at 949.258 kb on + strand at 949.258 kb on + strand at 949.258 kb on + strand at 949.258 kb on + strand at 949.258 kb on + strand at 949.258 kb on + strand at 949.259 kb on - strand at 949.259 kb on - strand at 949.259 kb on - strand at 949.259 kb on - strand at 949.259 kb on - strand at 949.259 kb on - strand at 949.259 kb on - strand at 949.259 kb on - strand at 949.262 kb on + strand at 949.262 kb on + strand at 949.262 kb on + strand at 949.262 kb on + strand at 949.262 kb on + strand at 949.262 kb on + strand at 949.262 kb on + strand at 949.263 kb on - strand at 949.263 kb on - strand at 949.263 kb on - strand at 949.263 kb on - strand at 949.263 kb on - strand at 949.263 kb on - strand at 949.275 kb on + strand at 949.281 kb on + strand at 949.282 kb on - strand at 949.324 kb on + strand at 949.325 kb on - strand at 949.325 kb on - strand at 949.336 kb on + strand at 949.336 kb on + strand at 949.337 kb on - strand at 949.374 kb on + strand at 949.374 kb on + strand at 949.424 kb on + strand at 949.427 kb on + strand at 949.430 kb on + strand at 949.458 kb on + strand at 949.459 kb on - strand at 949.467 kb on + strand at 949.467 kb on + strand at 949.468 kb on - strand at 949.470 kb on + strand at 949.471 kb on - strand at 949.471 kb on - strand at 949.485 kb on + strand at 949.486 kb on - strand at 949.536 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 946,371 - IAI47_04495 0.36 -0.8 946,371 - IAI47_04495 0.36 +1.2 946,411 - IAI47_04495 0.39 -0.4 946,411 - IAI47_04495 0.39 -0.8 946,411 - IAI47_04495 0.39 -0.5 946,419 + IAI47_04495 0.39 +0.8 946,454 + IAI47_04495 0.41 +1.1 946,454 + IAI47_04495 0.41 -2.4 946,454 + IAI47_04495 0.41 +0.1 946,455 - IAI47_04495 0.41 -0.8 946,456 + IAI47_04495 0.41 -0.8 946,462 + IAI47_04495 0.42 -0.1 946,462 + IAI47_04495 0.42 -1.0 946,463 - IAI47_04495 0.42 +1.1 946,463 - IAI47_04495 0.42 -0.1 946,495 - IAI47_04495 0.44 -0.1 946,495 - IAI47_04495 0.44 -1.2 946,495 - IAI47_04495 0.44 +1.0 946,508 - IAI47_04495 0.45 -3.9 946,516 + IAI47_04495 0.45 -2.6 946,516 + IAI47_04495 0.45 +0.0 946,516 + IAI47_04495 0.45 +0.2 946,516 + IAI47_04495 0.45 +0.4 946,517 - IAI47_04495 0.45 +0.7 946,517 - IAI47_04495 0.45 +0.6 946,517 - IAI47_04495 0.45 +0.2 946,517 - IAI47_04495 0.45 -0.5 946,517 - IAI47_04495 0.45 -0.1 946,517 - IAI47_04495 0.45 +1.1 946,547 + IAI47_04495 0.47 +1.4 946,547 + IAI47_04495 0.47 +1.1 946,548 - IAI47_04495 0.47 +1.8 946,548 - IAI47_04495 0.47 +0.2 946,562 + IAI47_04495 0.48 -0.0 946,562 + IAI47_04495 0.48 -1.4 946,563 - IAI47_04495 0.48 +0.8 946,563 - IAI47_04495 0.48 +1.0 946,648 - IAI47_04495 0.54 +0.2 946,648 - IAI47_04495 0.54 +0.6 946,655 + IAI47_04495 0.54 -1.2 946,656 - IAI47_04495 0.54 +0.8 946,670 + IAI47_04495 0.55 -1.2 946,710 + IAI47_04495 0.58 +0.2 946,711 - IAI47_04495 0.58 +0.4 946,711 - IAI47_04495 0.58 +0.4 946,776 - IAI47_04495 0.62 +1.4 946,809 + IAI47_04495 0.64 +1.0 946,810 - IAI47_04495 0.65 +0.1 946,810 - IAI47_04495 0.65 -3.1 946,810 - IAI47_04495 0.65 +1.2 946,810 - IAI47_04495 0.65 +1.2 946,841 + IAI47_04495 0.67 +0.2 946,841 + IAI47_04495 0.67 -0.8 946,841 + IAI47_04495 0.67 +0.2 946,842 - IAI47_04495 0.67 -0.2 946,842 - IAI47_04495 0.67 -0.3 946,864 + IAI47_04495 0.68 +0.2 946,864 + IAI47_04495 0.68 -0.8 946,864 + IAI47_04495 0.68 -0.5 946,864 + IAI47_04495 0.68 +1.2 946,864 + IAI47_04495 0.68 +0.5 946,864 + IAI47_04495 0.68 +1.0 946,864 + IAI47_04495 0.68 -0.5 946,864 + IAI47_04495 0.68 -0.8 946,865 - IAI47_04495 0.68 -1.2 946,865 - IAI47_04495 0.68 -0.7 946,865 - IAI47_04495 0.68 -0.1 946,865 - IAI47_04495 0.68 +2.3 946,865 - IAI47_04495 0.68 -1.4 946,865 - IAI47_04495 0.68 -1.3 946,868 + IAI47_04495 0.68 -1.4 946,868 + IAI47_04495 0.68 +1.2 946,868 + IAI47_04495 0.68 +0.2 946,868 + IAI47_04495 0.68 -0.8 946,869 - IAI47_04495 0.68 +2.8 946,869 - IAI47_04495 0.68 -2.6 946,869 - IAI47_04495 0.68 +0.6 946,966 + IAI47_04495 0.75 -0.9 946,967 - IAI47_04495 0.75 -1.0 946,967 - IAI47_04495 0.75 +0.9 947,058 - IAI47_04495 0.81 -1.0 947,066 + IAI47_04495 0.81 -1.2 947,066 + IAI47_04495 0.81 +1.2 947,066 + IAI47_04495 0.81 -0.4 947,066 + IAI47_04495 0.81 -2.6 947,066 + IAI47_04495 0.81 -1.8 947,066 + IAI47_04495 0.81 -0.0 947,067 - IAI47_04495 0.81 -0.1 947,067 - IAI47_04495 0.81 -1.0 947,067 - IAI47_04495 0.81 +0.2 947,067 - IAI47_04495 0.81 +2.2 947,067 - IAI47_04495 0.81 -2.8 947,197 - IAI47_04495 0.90 +1.6 947,204 + -1.4 947,243 + +0.4 947,243 + -0.5 947,243 + +0.4 947,244 - +0.2 947,355 + +1.7 947,355 + -0.5 947,356 - +1.0 947,450 + -0.6 947,451 - +0.0 947,451 - +0.2 947,451 - -1.2 947,476 - -1.6 947,505 + IAI47_04500 0.11 +1.2 947,613 + IAI47_04500 0.21 +1.3 947,620 - IAI47_04500 0.21 -1.8 947,690 + IAI47_04500 0.27 -0.7 947,691 - IAI47_04500 0.27 +1.7 947,691 - IAI47_04500 0.27 -1.8 947,708 + IAI47_04500 0.29 -1.0 947,708 + IAI47_04500 0.29 +1.8 947,708 + IAI47_04500 0.29 -0.1 947,708 + IAI47_04500 0.29 -1.0 947,708 + IAI47_04500 0.29 +0.2 947,708 + IAI47_04500 0.29 +0.2 947,708 + IAI47_04500 0.29 +1.0 947,709 - IAI47_04500 0.29 -0.5 947,709 - IAI47_04500 0.29 -0.9 947,709 - IAI47_04500 0.29 +0.8 947,709 - IAI47_04500 0.29 -0.2 947,709 - IAI47_04500 0.29 +1.4 947,709 - IAI47_04500 0.29 -0.4 947,709 - IAI47_04500 0.29 -0.3 947,709 - IAI47_04500 0.29 +1.2 947,746 + IAI47_04500 0.32 +0.2 947,746 + IAI47_04500 0.32 -1.8 947,747 - IAI47_04500 0.32 +0.2 947,747 - IAI47_04500 0.32 -0.8 947,747 - IAI47_04500 0.32 +1.8 947,973 + IAI47_04500 0.51 -0.8 947,974 - IAI47_04500 0.51 -2.1 947,974 - IAI47_04500 0.51 -0.2 947,994 + IAI47_04500 0.53 -1.4 947,995 - 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Or see this region's nucleotide sequence