Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03720 and IAI47_03725 are separated by 279 nucleotides IAI47_03725 and IAI47_03730 are separated by 256 nucleotides
IAI47_03720: IAI47_03720 - ribose-5-phosphate isomerase RpiA, at 776,444 to 777,103
_03720
IAI47_03725: IAI47_03725 - phosphoglycerate dehydrogenase, at 777,383 to 778,621
_03725
IAI47_03730: IAI47_03730 - 5-formyltetrahydrofolate cyclo-ligase, at 778,878 to 779,471
_03730
Position (kb) 777
778
779 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 776.401 kb on + strand at 776.401 kb on + strand at 776.402 kb on - strand at 776.402 kb on - strand at 776.402 kb on - strand at 776.403 kb on + strand at 776.403 kb on + strand at 776.406 kb on + strand at 776.406 kb on + strand at 776.406 kb on + strand at 776.406 kb on + strand at 776.434 kb on + strand at 776.434 kb on + strand at 776.440 kb on + strand at 776.440 kb on + strand at 776.440 kb on + strand at 776.440 kb on + strand at 776.440 kb on + strand at 777.091 kb on + strand at 777.092 kb on - strand at 777.132 kb on - strand at 777.132 kb on - strand at 777.181 kb on + strand at 777.181 kb on + strand at 777.182 kb on - strand at 777.182 kb on - strand at 777.182 kb on - strand at 777.182 kb on - strand at 777.182 kb on - strand at 777.182 kb on - strand at 777.182 kb on - strand at 777.182 kb on - strand at 777.190 kb on + strand at 777.190 kb on + strand at 777.190 kb on + strand at 777.190 kb on + strand at 777.191 kb on - strand at 777.191 kb on - strand at 777.191 kb on - strand at 777.255 kb on + strand at 777.255 kb on + strand at 777.255 kb on + strand at 777.256 kb on - strand at 777.256 kb on - strand at 777.256 kb on - strand at 777.256 kb on - strand at 777.256 kb on - strand at 777.256 kb on - strand at 777.256 kb on - strand at 777.256 kb on - strand at 777.256 kb on - strand at 777.300 kb on + strand at 777.345 kb on + strand at 777.346 kb on - strand at 777.346 kb on - strand at 777.346 kb on - strand at 777.346 kb on - strand at 777.346 kb on - strand at 777.346 kb on - strand at 777.346 kb on - strand at 777.346 kb on - strand at 777.350 kb on + strand at 777.350 kb on + strand at 777.350 kb on + strand at 777.350 kb on + strand at 777.351 kb on - strand at 777.351 kb on - strand at 777.351 kb on - strand at 777.351 kb on - strand at 777.351 kb on - strand at 777.372 kb on - strand at 777.372 kb on - strand at 777.393 kb on + strand at 777.393 kb on + strand at 777.394 kb on - strand at 777.394 kb on - strand at 777.394 kb on - strand at 777.394 kb on - strand at 777.394 kb on - strand at 777.394 kb on - strand at 777.394 kb on - strand at 777.410 kb on - strand at 777.410 kb on - strand at 777.410 kb on - strand at 777.415 kb on + strand at 777.415 kb on + strand at 777.415 kb on + strand at 777.415 kb on + strand at 777.415 kb on + strand at 777.415 kb on + strand at 777.416 kb on - strand at 777.416 kb on - strand at 777.416 kb on - strand at 777.416 kb on - strand at 777.476 kb on + strand at 777.476 kb on + strand at 777.476 kb on + strand at 777.476 kb on + strand at 777.476 kb on + strand at 777.477 kb on - strand at 777.477 kb on - strand at 777.477 kb on - strand at 777.479 kb on - strand at 777.479 kb on - strand at 777.523 kb on - strand, within IAI47_03725 at 777.555 kb on + strand, within IAI47_03725 at 777.808 kb on - strand, within IAI47_03725 at 777.847 kb on + strand, within IAI47_03725 at 777.857 kb on + strand, within IAI47_03725 at 777.908 kb on + strand, within IAI47_03725 at 777.920 kb on + strand, within IAI47_03725 at 777.920 kb on + strand, within IAI47_03725 at 777.921 kb on - strand, within IAI47_03725 at 777.921 kb on - strand, within IAI47_03725 at 777.921 kb on - strand, within IAI47_03725 at 777.964 kb on - strand, within IAI47_03725 at 777.964 kb on - strand, within IAI47_03725 at 778.039 kb on + strand, within IAI47_03725 at 778.039 kb on + strand, within IAI47_03725 at 778.040 kb on - strand, within IAI47_03725 at 778.040 kb on - strand, within IAI47_03725 at 778.110 kb on + strand, within IAI47_03725 at 778.111 kb on - strand, within IAI47_03725 at 778.147 kb on + strand, within IAI47_03725 at 778.148 kb on - strand, within IAI47_03725 at 778.148 kb on - strand, within IAI47_03725 at 778.148 kb on - strand, within IAI47_03725 at 778.148 kb on - strand, within IAI47_03725 at 778.213 kb on + strand, within IAI47_03725 at 778.213 kb on + strand, within IAI47_03725 at 778.213 kb on + strand, within IAI47_03725 at 778.214 kb on - strand, within IAI47_03725 at 778.214 kb on - strand, within IAI47_03725 at 778.230 kb on - strand, within IAI47_03725 at 778.325 kb on + strand, within IAI47_03725 at 778.325 kb on + strand, within IAI47_03725 at 778.326 kb on - strand, within IAI47_03725 at 778.399 kb on + strand, within IAI47_03725 at 778.400 kb on - strand, within IAI47_03725 at 778.400 kb on - strand, within IAI47_03725 at 778.493 kb on + strand, within IAI47_03725 at 778.494 kb on - strand, within IAI47_03725 at 778.494 kb on - strand, within IAI47_03725 at 778.520 kb on + strand at 778.520 kb on + strand at 778.520 kb on + strand at 778.520 kb on + strand at 778.520 kb on + strand at 778.520 kb on + strand at 778.521 kb on - strand at 778.521 kb on - strand at 778.521 kb on - strand at 778.594 kb on + strand at 778.594 kb on + strand at 778.595 kb on - strand at 778.597 kb on + strand at 778.597 kb on + strand at 778.598 kb on - strand at 778.598 kb on - strand at 778.598 kb on - strand at 778.598 kb on - strand at 778.616 kb on + strand at 778.616 kb on + strand at 778.616 kb on + strand at 778.616 kb on + strand at 778.617 kb on - strand at 778.617 kb on - strand at 778.619 kb on + strand at 778.619 kb on + strand at 778.619 kb on + strand at 778.619 kb on - strand at 778.620 kb on - strand at 778.620 kb on - strand at 778.620 kb on - strand at 778.620 kb on - strand at 778.620 kb on - strand at 778.645 kb on + strand at 778.645 kb on + strand at 778.645 kb on + strand at 778.645 kb on + strand at 778.646 kb on - strand at 778.665 kb on + strand at 778.665 kb on + strand at 778.666 kb on - strand at 778.666 kb on - strand at 778.666 kb on - strand at 778.666 kb on - strand at 778.673 kb on - strand at 778.781 kb on + strand at 778.782 kb on - strand at 778.782 kb on - strand at 778.782 kb on - strand at 778.782 kb on - strand at 778.805 kb on + strand at 778.805 kb on + strand at 778.805 kb on + strand at 778.805 kb on + strand at 778.806 kb on - strand at 778.806 kb on - strand at 778.879 kb on + strand at 778.879 kb on + strand at 778.880 kb on - strand at 778.911 kb on + strand at 778.912 kb on - strand at 778.912 kb on - strand at 778.926 kb on + strand at 778.926 kb on + strand at 778.926 kb on + strand at 778.926 kb on + strand at 778.926 kb on + strand at 778.926 kb on + strand at 778.926 kb on + strand at 778.926 kb on + strand at 778.926 kb on + strand at 778.927 kb on - strand at 778.927 kb on - strand at 778.927 kb on - strand at 778.927 kb on - strand at 778.927 kb on - strand at 779.029 kb on + strand, within IAI47_03730 at 779.029 kb on + strand, within IAI47_03730 at 779.029 kb on + strand, within IAI47_03730 at 779.030 kb on - strand, within IAI47_03730 at 779.030 kb on - strand, within IAI47_03730 at 779.151 kb on - strand, within IAI47_03730 at 779.151 kb on - strand, within IAI47_03730 at 779.151 kb on - strand, within IAI47_03730 at 779.151 kb on - strand, within IAI47_03730 at 779.154 kb on + strand, within IAI47_03730 at 779.154 kb on + strand, within IAI47_03730 at 779.154 kb on + strand, within IAI47_03730 at 779.154 kb on + strand, within IAI47_03730 at 779.154 kb on + strand, within IAI47_03730 at 779.155 kb on - strand, within IAI47_03730 at 779.155 kb on - strand, within IAI47_03730 at 779.155 kb on - strand, within IAI47_03730 at 779.155 kb on - strand, within IAI47_03730 at 779.155 kb on - strand, within IAI47_03730 at 779.160 kb on - strand, within IAI47_03730 at 779.160 kb on - strand, within IAI47_03730 at 779.160 kb on - strand, within IAI47_03730 at 779.160 kb on - strand, within IAI47_03730 at 779.165 kb on + strand, within IAI47_03730 at 779.165 kb on + strand, within IAI47_03730 at 779.166 kb on - strand, within IAI47_03730 at 779.166 kb on - strand, within IAI47_03730 at 779.166 kb on - strand, within IAI47_03730 at 779.189 kb on - strand, within IAI47_03730 at 779.239 kb on + strand, within IAI47_03730 at 779.240 kb on - strand, within IAI47_03730 at 779.240 kb on - strand, within IAI47_03730 at 779.240 kb on - strand, within IAI47_03730 at 779.286 kb on - strand, within IAI47_03730 at 779.286 kb on - strand, within IAI47_03730 at 779.336 kb on + strand, within IAI47_03730 at 779.336 kb on + strand, within IAI47_03730 at 779.347 kb on + strand, within IAI47_03730 at 779.347 kb on + strand, within IAI47_03730 at 779.347 kb on + strand, within IAI47_03730 at 779.347 kb on + strand, within IAI47_03730 at 779.348 kb on - strand, within IAI47_03730 at 779.348 kb on - strand, within IAI47_03730 at 779.351 kb on + strand, within IAI47_03730 at 779.351 kb on + strand, within IAI47_03730 at 779.352 kb on - strand, within IAI47_03730 at 779.352 kb on - strand, within IAI47_03730 at 779.352 kb on - strand, within IAI47_03730 at 779.424 kb on + strand at 779.425 kb on - strand at 779.425 kb on - strand at 779.451 kb on + strand at 779.451 kb on + strand at 779.451 kb on + strand at 779.452 kb on - strand at 779.452 kb on - strand at 779.452 kb on - strand at 779.452 kb on - strand at 779.459 kb on + strand at 779.502 kb on + strand at 779.503 kb on - strand at 779.503 kb on - strand at 779.503 kb on - strand at 779.521 kb on + strand at 779.522 kb on - strand at 779.522 kb on - strand at 779.522 kb on - strand at 779.522 kb on - strand at 779.523 kb on + strand at 779.523 kb on + strand at 779.523 kb on + strand at 779.523 kb on + strand at 779.523 kb on + strand at 779.523 kb on + strand at 779.523 kb on + strand at 779.523 kb on + strand at 779.523 kb on + strand at 779.524 kb on - strand at 779.524 kb on - strand at 779.524 kb on - strand at 779.524 kb on - strand at 779.524 kb on - strand at 779.524 kb on - strand at 779.524 kb on - strand at 779.524 kb on - strand at 779.585 kb on + strand at 779.593 kb on - strand at 779.593 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 776,401 + +0.5 776,401 + -0.2 776,402 - +0.1 776,402 - -0.8 776,402 - +0.5 776,403 + -0.0 776,403 + -2.4 776,406 + -0.6 776,406 + -0.3 776,406 + -0.8 776,406 + +0.3 776,434 + -0.4 776,434 + -0.2 776,440 + +0.2 776,440 + -2.9 776,440 + -1.1 776,440 + -2.5 776,440 + -0.3 777,091 + -0.5 777,092 - -1.4 777,132 - -0.4 777,132 - +2.4 777,181 + -0.8 777,181 + +0.3 777,182 - -2.5 777,182 - -2.4 777,182 - +0.2 777,182 - -1.8 777,182 - -2.0 777,182 - +1.1 777,182 - -2.6 777,182 - -3.0 777,190 + -1.4 777,190 + +0.2 777,190 + -1.4 777,190 + +0.4 777,191 - -1.4 777,191 - -0.6 777,191 - -1.5 777,255 + -0.4 777,255 + +0.2 777,255 + +0.8 777,256 - -3.3 777,256 - -1.6 777,256 - -1.8 777,256 - -1.0 777,256 - -1.4 777,256 - -2.2 777,256 - -0.2 777,256 - -1.8 777,256 - -0.8 777,300 + +1.0 777,345 + -0.4 777,346 - -3.2 777,346 - -3.8 777,346 - -4.0 777,346 - -4.7 777,346 - -3.2 777,346 - -2.8 777,346 - -5.9 777,346 - -4.2 777,350 + +0.2 777,350 + +0.2 777,350 + +1.2 777,350 + -1.2 777,351 - -4.2 777,351 - -2.8 777,351 - -3.1 777,351 - -2.8 777,351 - -0.8 777,372 - -3.1 777,372 - -2.1 777,393 + -3.1 777,393 + -3.4 777,394 - -2.6 777,394 - -1.4 777,394 - -3.1 777,394 - -1.8 777,394 - -4.7 777,394 - -4.1 777,394 - -3.7 777,410 - -2.6 777,410 - -1.4 777,410 - -2.8 777,415 + +0.2 777,415 + -4.1 777,415 + -2.8 777,415 + -3.7 777,415 + -3.7 777,415 + -1.4 777,416 - -2.8 777,416 - -2.8 777,416 - -4.1 777,416 - -3.1 777,476 + -1.8 777,476 + -3.0 777,476 + -1.4 777,476 + -2.4 777,476 + -2.8 777,477 - -4.4 777,477 - -0.8 777,477 - -2.8 777,479 - -3.4 777,479 - -3.2 777,523 - IAI47_03725 0.11 -3.4 777,555 + IAI47_03725 0.14 -5.2 777,808 - IAI47_03725 0.34 -2.4 777,847 + IAI47_03725 0.37 -3.4 777,857 + IAI47_03725 0.38 -2.8 777,908 + IAI47_03725 0.42 -5.0 777,920 + IAI47_03725 0.43 -4.2 777,920 + IAI47_03725 0.43 -2.6 777,921 - IAI47_03725 0.43 -3.0 777,921 - IAI47_03725 0.43 -2.8 777,921 - IAI47_03725 0.43 -4.1 777,964 - IAI47_03725 0.47 +1.2 777,964 - IAI47_03725 0.47 -4.0 778,039 + IAI47_03725 0.53 -2.1 778,039 + IAI47_03725 0.53 -2.1 778,040 - IAI47_03725 0.53 -4.0 778,040 - IAI47_03725 0.53 -1.8 778,110 + IAI47_03725 0.59 -2.8 778,111 - IAI47_03725 0.59 -2.6 778,147 + IAI47_03725 0.62 -2.1 778,148 - IAI47_03725 0.62 -2.4 778,148 - IAI47_03725 0.62 -3.1 778,148 - IAI47_03725 0.62 -2.1 778,148 - IAI47_03725 0.62 -2.4 778,213 + IAI47_03725 0.67 -3.5 778,213 + IAI47_03725 0.67 -5.9 778,213 + IAI47_03725 0.67 -2.8 778,214 - IAI47_03725 0.67 -3.2 778,214 - IAI47_03725 0.67 -3.8 778,230 - IAI47_03725 0.68 -3.5 778,325 + IAI47_03725 0.76 -2.4 778,325 + IAI47_03725 0.76 -1.4 778,326 - IAI47_03725 0.76 -3.7 778,399 + IAI47_03725 0.82 -1.8 778,400 - IAI47_03725 0.82 -2.6 778,400 - IAI47_03725 0.82 -4.0 778,493 + IAI47_03725 0.90 -3.2 778,494 - IAI47_03725 0.90 -1.8 778,494 - IAI47_03725 0.90 -2.1 778,520 + -3.0 778,520 + -2.6 778,520 + -2.6 778,520 + -3.1 778,520 + -1.8 778,520 + -3.1 778,521 - -2.6 778,521 - -4.0 778,521 - -2.8 778,594 + -2.6 778,594 + -3.1 778,595 - -2.4 778,597 + -1.4 778,597 + -5.0 778,598 - -2.4 778,598 - -2.1 778,598 - -3.3 778,598 - -2.1 778,616 + +0.5 778,616 + -0.5 778,616 + -0.0 778,616 + +0.2 778,617 - -1.2 778,617 - -0.5 778,619 + -1.3 778,619 + +0.2 778,619 + -0.3 778,619 - -2.4 778,620 - -1.0 778,620 - -2.6 778,620 - -0.2 778,620 - -2.2 778,620 - +0.6 778,645 + -0.4 778,645 + +0.5 778,645 + +2.8 778,645 + +1.5 778,646 - -0.4 778,665 + -0.8 778,665 + -1.1 778,666 - +0.2 778,666 - -0.9 778,666 - -0.7 778,666 - +0.4 778,673 - -0.4 778,781 + -0.4 778,782 - +1.3 778,782 - -2.6 778,782 - -0.4 778,782 - -0.6 778,805 + -0.2 778,805 + -1.4 778,805 + -2.8 778,805 + -0.5 778,806 - -1.8 778,806 - -1.4 778,879 + -0.4 778,879 + -1.1 778,880 - -3.0 778,911 + -1.9 778,912 - -2.1 778,912 - -2.0 778,926 + -2.1 778,926 + -0.6 778,926 + -0.8 778,926 + -2.8 778,926 + -0.2 778,926 + -0.5 778,926 + -2.6 778,926 + -1.8 778,926 + -1.4 778,927 - -1.7 778,927 - +1.2 778,927 - -2.5 778,927 - +0.2 778,927 - -1.4 779,029 + IAI47_03730 0.25 -0.8 779,029 + IAI47_03730 0.25 -2.8 779,029 + IAI47_03730 0.25 -2.1 779,030 - IAI47_03730 0.26 -1.1 779,030 - IAI47_03730 0.26 -2.0 779,151 - IAI47_03730 0.46 -3.3 779,151 - IAI47_03730 0.46 -2.6 779,151 - IAI47_03730 0.46 -1.6 779,151 - IAI47_03730 0.46 -1.8 779,154 + IAI47_03730 0.46 -0.6 779,154 + IAI47_03730 0.46 +0.9 779,154 + IAI47_03730 0.46 -1.6 779,154 + IAI47_03730 0.46 -0.3 779,154 + IAI47_03730 0.46 -1.4 779,155 - IAI47_03730 0.47 -2.4 779,155 - IAI47_03730 0.47 -2.0 779,155 - IAI47_03730 0.47 -3.3 779,155 - IAI47_03730 0.47 -1.4 779,155 - IAI47_03730 0.47 -1.8 779,160 - IAI47_03730 0.47 -1.9 779,160 - IAI47_03730 0.47 -2.6 779,160 - IAI47_03730 0.47 -3.0 779,160 - IAI47_03730 0.47 -2.2 779,165 + IAI47_03730 0.48 -4.0 779,165 + IAI47_03730 0.48 -1.1 779,166 - IAI47_03730 0.48 -0.8 779,166 - IAI47_03730 0.48 +0.2 779,166 - IAI47_03730 0.48 -2.6 779,189 - IAI47_03730 0.52 -2.2 779,239 + IAI47_03730 0.61 -2.1 779,240 - IAI47_03730 0.61 -2.1 779,240 - IAI47_03730 0.61 -1.7 779,240 - IAI47_03730 0.61 +0.2 779,286 - IAI47_03730 0.69 -1.4 779,286 - IAI47_03730 0.69 -2.4 779,336 + IAI47_03730 0.77 -1.2 779,336 + IAI47_03730 0.77 -0.8 779,347 + IAI47_03730 0.79 -2.1 779,347 + IAI47_03730 0.79 -1.6 779,347 + IAI47_03730 0.79 +0.6 779,347 + IAI47_03730 0.79 +1.0 779,348 - IAI47_03730 0.79 -1.0 779,348 - IAI47_03730 0.79 -0.8 779,351 + IAI47_03730 0.80 -0.8 779,351 + IAI47_03730 0.80 -2.4 779,352 - IAI47_03730 0.80 -4.4 779,352 - IAI47_03730 0.80 -3.3 779,352 - IAI47_03730 0.80 -3.5 779,424 + -1.8 779,425 - -1.2 779,425 - -2.4 779,451 + +1.5 779,451 + -0.4 779,451 + +0.7 779,452 - -0.8 779,452 - -2.1 779,452 - +0.8 779,452 - +1.2 779,459 + -3.4 779,502 + +1.5 779,503 - +0.2 779,503 - -0.6 779,503 - +0.2 779,521 + -2.4 779,522 - -0.2 779,522 - -0.1 779,522 - +2.2 779,522 - -0.3 779,523 + -0.4 779,523 + -1.3 779,523 + +1.1 779,523 + -0.4 779,523 + +0.1 779,523 + -1.4 779,523 + -1.4 779,523 + -0.9 779,523 + +1.1 779,524 - -0.8 779,524 - -1.4 779,524 - -0.5 779,524 - +0.5 779,524 - -0.4 779,524 - +1.5 779,524 - -0.1 779,524 - -2.4 779,585 + -0.0 779,593 - -0.8 779,593 - -0.1
Or see this region's nucleotide sequence