Strain Fitness in Pantoea sp. MT58 around IAI47_00795

Experiment: Ying_sugar7 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_00785 and IAI47_00790 are separated by 161 nucleotidesIAI47_00790 and IAI47_00795 are separated by 28 nucleotidesIAI47_00795 and IAI47_00800 are separated by 120 nucleotidesIAI47_00800 and IAI47_00805 are separated by 98 nucleotides IAI47_00785: IAI47_00785 - sulfate ABC transporter substrate-binding protein, at 166,212 to 167,201 _00785 IAI47_00790: IAI47_00790 - CDP-diacylglycerol diphosphatase, at 167,363 to 168,136 _00790 IAI47_00795: IAI47_00795 - triose-phosphate isomerase, at 168,165 to 168,932 _00795 IAI47_00800: IAI47_00800 - YiiQ family protein, at 169,053 to 169,643 _00800 IAI47_00805: IAI47_00805 - DUF805 domain-containing protein, at 169,742 to 170,176 _00805 Position (kb) 168 169Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 167.178 kb on + strandat 167.178 kb on + strandat 167.178 kb on + strandat 167.178 kb on + strandat 167.178 kb on + strandat 167.178 kb on + strandat 167.179 kb on - strandat 167.179 kb on - strandat 167.179 kb on - strandat 167.179 kb on - strandat 167.179 kb on - strandat 167.179 kb on - strandat 167.179 kb on - strandat 167.179 kb on - strandat 167.179 kb on - strandat 167.179 kb on - strandat 167.179 kb on - strandat 167.199 kb on + strandat 167.199 kb on + strandat 167.200 kb on - strandat 167.200 kb on - strandat 167.202 kb on + strandat 167.202 kb on + strandat 167.202 kb on + strandat 167.202 kb on + strandat 167.202 kb on + strandat 167.202 kb on + strandat 167.202 kb on + strandat 167.202 kb on + strandat 167.202 kb on + strandat 167.202 kb on + strandat 167.203 kb on - strandat 167.203 kb on - strandat 167.203 kb on - strandat 167.203 kb on - strandat 167.203 kb on - strandat 167.203 kb on - strandat 167.203 kb on - strandat 167.203 kb on - strandat 167.340 kb on + strandat 167.340 kb on + strandat 167.362 kb on + strandat 167.362 kb on + strandat 167.362 kb on + strandat 167.363 kb on - strandat 167.363 kb on - strandat 167.363 kb on - strandat 167.427 kb on + strandat 167.557 kb on + strand, within IAI47_00790at 167.558 kb on + strand, within IAI47_00790at 167.559 kb on - strand, within IAI47_00790at 167.559 kb on - strand, within IAI47_00790at 167.559 kb on - strand, within IAI47_00790at 167.559 kb on - strand, within IAI47_00790at 167.575 kb on + strand, within IAI47_00790at 167.575 kb on + strand, within IAI47_00790at 167.575 kb on + strand, within IAI47_00790at 167.575 kb on + strand, within IAI47_00790at 167.575 kb on + strand, within IAI47_00790at 167.576 kb on - strand, within IAI47_00790at 167.576 kb on - strand, within IAI47_00790at 167.576 kb on - strandat 167.594 kb on + strand, within IAI47_00790at 167.594 kb on + strand, within IAI47_00790at 167.595 kb on - strand, within IAI47_00790at 167.595 kb on - strand, within IAI47_00790at 167.657 kb on - strand, within IAI47_00790at 167.657 kb on - strand, within IAI47_00790at 167.657 kb on - strand, within IAI47_00790at 167.666 kb on + strand, within IAI47_00790at 167.666 kb on + strand, within IAI47_00790at 167.666 kb on + strand, within IAI47_00790at 167.667 kb on - strand, within IAI47_00790at 167.762 kb on + strand, within IAI47_00790at 167.762 kb on + strand, within IAI47_00790at 167.788 kb on + strand, within IAI47_00790at 167.788 kb on + strand, within IAI47_00790at 167.789 kb on - strand, within IAI47_00790at 167.789 kb on - strand, within IAI47_00790at 167.789 kb on - strand, within IAI47_00790at 167.789 kb on - strand, within IAI47_00790at 167.872 kb on + strand, within IAI47_00790at 167.873 kb on - strand, within IAI47_00790at 167.873 kb on - strand, within IAI47_00790at 167.873 kb on - strand, within IAI47_00790at 167.873 kb on - strand, within IAI47_00790at 167.873 kb on - strand, within IAI47_00790at 167.873 kb on - strand, within IAI47_00790at 167.881 kb on + strand, within IAI47_00790at 167.882 kb on - strand, within IAI47_00790at 167.990 kb on + strand, within IAI47_00790at 167.990 kb on + strand, within IAI47_00790at 167.990 kb on + strand, within IAI47_00790at 167.990 kb on + strand, within IAI47_00790at 167.990 kb on + strand, within IAI47_00790at 167.991 kb on - strand, within IAI47_00790at 167.991 kb on - strand, within IAI47_00790at 167.991 kb on - strand, within IAI47_00790at 167.991 kb on - strand, within IAI47_00790at 167.991 kb on - strand, within IAI47_00790at 167.991 kb on - strand, within IAI47_00790at 167.991 kb on - strand, within IAI47_00790at 167.991 kb on - strand, within IAI47_00790at 167.991 kb on - strand, within IAI47_00790at 168.043 kb on - strand, within IAI47_00790at 168.043 kb on - strand, within IAI47_00790at 168.120 kb on + strandat 168.134 kb on + strandat 168.134 kb on + strandat 168.159 kb on + strandat 168.160 kb on - strandat 168.160 kb on - strandat 168.166 kb on + strandat 168.955 kb on - strandat 168.955 kb on - strandat 168.955 kb on - strandat 168.955 kb on - strandat 169.000 kb on - strandat 169.000 kb on - strandat 169.000 kb on - strandat 169.000 kb on - strandat 169.001 kb on + strandat 169.001 kb on + strandat 169.001 kb on + strandat 169.002 kb on - strandat 169.002 kb on - strandat 169.002 kb on - strandat 169.014 kb on + strandat 169.159 kb on + strand, within IAI47_00800at 169.160 kb on - strand, within IAI47_00800at 169.160 kb on - strand, within IAI47_00800at 169.185 kb on + strand, within IAI47_00800at 169.185 kb on + strand, within IAI47_00800at 169.185 kb on + strand, within IAI47_00800at 169.186 kb on - strand, within IAI47_00800at 169.186 kb on - strand, within IAI47_00800at 169.221 kb on + strand, within IAI47_00800at 169.230 kb on + strand, within IAI47_00800at 169.258 kb on + strand, within IAI47_00800at 169.258 kb on + strand, within IAI47_00800at 169.258 kb on + strand, within IAI47_00800at 169.258 kb on + strand, within IAI47_00800at 169.258 kb on + strand, within IAI47_00800at 169.258 kb on + strand, within IAI47_00800at 169.258 kb on + strand, within IAI47_00800at 169.258 kb on + strand, within IAI47_00800at 169.258 kb on + strand, within IAI47_00800at 169.258 kb on + strand, within IAI47_00800at 169.258 kb on + strand, within IAI47_00800at 169.259 kb on - strand, within IAI47_00800at 169.259 kb on - strand, within IAI47_00800at 169.259 kb on - strand, within IAI47_00800at 169.259 kb on - strand, within IAI47_00800at 169.259 kb on - strand, within IAI47_00800at 169.259 kb on - strand, within IAI47_00800at 169.259 kb on - strand, within IAI47_00800at 169.259 kb on - strand, within IAI47_00800at 169.362 kb on - strand, within IAI47_00800at 169.369 kb on + strand, within IAI47_00800at 169.369 kb on + strand, within IAI47_00800at 169.370 kb on - strand, within IAI47_00800at 169.370 kb on - strand, within IAI47_00800at 169.370 kb on - strand, within IAI47_00800at 169.370 kb on - strand, within IAI47_00800at 169.427 kb on + strand, within IAI47_00800at 169.427 kb on + strand, within IAI47_00800at 169.428 kb on - strand, within IAI47_00800at 169.475 kb on + strand, within IAI47_00800at 169.475 kb on + strand, within IAI47_00800at 169.475 kb on + strand, within IAI47_00800at 169.477 kb on + strand, within IAI47_00800at 169.477 kb on + strand, within IAI47_00800at 169.478 kb on - strand, within IAI47_00800at 169.478 kb on - strand, within IAI47_00800at 169.505 kb on + strand, within IAI47_00800at 169.505 kb on + strand, within IAI47_00800at 169.505 kb on + strand, within IAI47_00800at 169.505 kb on + strand, within IAI47_00800at 169.506 kb on - strand, within IAI47_00800at 169.506 kb on - strand, within IAI47_00800at 169.506 kb on - strand, within IAI47_00800at 169.506 kb on - strand, within IAI47_00800at 169.534 kb on + strand, within IAI47_00800at 169.535 kb on - strand, within IAI47_00800at 169.615 kb on - strandat 169.679 kb on + strandat 169.736 kb on + strandat 169.736 kb on + strandat 169.736 kb on + strandat 169.737 kb on - strandat 169.737 kb on - strandat 169.737 kb on - strandat 169.737 kb on - strandat 169.737 kb on - strandat 169.749 kb on + strandat 169.749 kb on + strandat 169.750 kb on - strandat 169.750 kb on - strandat 169.839 kb on + strand, within IAI47_00805at 169.839 kb on + strand, within IAI47_00805at 169.839 kb on + strand, within IAI47_00805at 169.839 kb on + strand, within IAI47_00805at 169.839 kb on + strand, within IAI47_00805at 169.839 kb on + strand, within IAI47_00805at 169.839 kb on + strand, within IAI47_00805at 169.839 kb on + strand, within IAI47_00805at 169.839 kb on + strand, within IAI47_00805at 169.839 kb on + strand, within IAI47_00805at 169.839 kb on + strand, within IAI47_00805at 169.840 kb on - strand, within IAI47_00805at 169.840 kb on - strand, within IAI47_00805at 169.840 kb on - strand, within IAI47_00805at 169.840 kb on - strand, within IAI47_00805at 169.840 kb on - strand, within IAI47_00805at 169.843 kb on + strand, within IAI47_00805at 169.844 kb on - strand, within IAI47_00805at 169.844 kb on - strand, within IAI47_00805at 169.870 kb on + strand, within IAI47_00805at 169.929 kb on + strand, within IAI47_00805at 169.929 kb on + strand, within IAI47_00805at 169.929 kb on + strand, within IAI47_00805at 169.929 kb on + strand, within IAI47_00805at 169.930 kb on - strand, within IAI47_00805at 169.930 kb on - strand, within IAI47_00805at 169.930 kb on - strand, within IAI47_00805at 169.930 kb on - strand, within IAI47_00805

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3
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167,178 + -1.0
167,178 + -1.8
167,178 + -0.4
167,178 + +0.2
167,178 + +0.6
167,178 + -0.3
167,179 - -0.2
167,179 - -1.4
167,179 - -1.4
167,179 - -0.4
167,179 - +0.2
167,179 - -0.0
167,179 - -1.8
167,179 - +0.7
167,179 - +1.2
167,179 - -0.8
167,179 - +1.2
167,199 + +0.8
167,199 + -2.5
167,200 - -1.1
167,200 - +0.5
167,202 + +0.2
167,202 + +0.4
167,202 + -0.8
167,202 + +0.1
167,202 + -0.1
167,202 + +0.6
167,202 + +0.2
167,202 + -0.1
167,202 + +0.6
167,202 + -0.5
167,203 - +0.3
167,203 - -0.4
167,203 - -1.4
167,203 - -1.0
167,203 - +1.5
167,203 - -0.5
167,203 - -0.2
167,203 - -0.5
167,340 + -1.8
167,340 + -1.3
167,362 + -0.4
167,362 + +0.2
167,362 + -0.1
167,363 - -1.4
167,363 - +0.7
167,363 - +0.6
167,427 + +0.8
167,557 + IAI47_00790 0.25 -0.2
167,558 + IAI47_00790 0.25 -0.2
167,559 - IAI47_00790 0.25 +1.2
167,559 - IAI47_00790 0.25 -1.1
167,559 - IAI47_00790 0.25 +0.6
167,559 - IAI47_00790 0.25 +0.2
167,575 + IAI47_00790 0.27 -0.8
167,575 + IAI47_00790 0.27 -1.6
167,575 + IAI47_00790 0.27 -0.0
167,575 + IAI47_00790 0.27 -1.4
167,575 + IAI47_00790 0.27 -0.4
167,576 - IAI47_00790 0.28 +0.2
167,576 - IAI47_00790 0.28 -1.2
167,576 - -0.8
167,594 + IAI47_00790 0.30 -1.1
167,594 + IAI47_00790 0.30 -1.8
167,595 - IAI47_00790 0.30 +0.2
167,595 - IAI47_00790 0.30 +2.6
167,657 - IAI47_00790 0.38 -0.8
167,657 - IAI47_00790 0.38 +2.0
167,657 - IAI47_00790 0.38 +1.8
167,666 + IAI47_00790 0.39 +0.2
167,666 + IAI47_00790 0.39 -0.7
167,666 + IAI47_00790 0.39 +0.4
167,667 - IAI47_00790 0.39 +0.1
167,762 + IAI47_00790 0.52 +0.2
167,762 + IAI47_00790 0.52 +0.2
167,788 + IAI47_00790 0.55 +2.0
167,788 + IAI47_00790 0.55 -0.1
167,789 - IAI47_00790 0.55 +1.2
167,789 - IAI47_00790 0.55 -0.4
167,789 - IAI47_00790 0.55 -0.3
167,789 - IAI47_00790 0.55 -0.8
167,872 + IAI47_00790 0.66 -0.2
167,873 - IAI47_00790 0.66 -0.4
167,873 - IAI47_00790 0.66 -0.0
167,873 - IAI47_00790 0.66 -0.8
167,873 - IAI47_00790 0.66 +0.2
167,873 - IAI47_00790 0.66 +1.5
167,873 - IAI47_00790 0.66 -0.2
167,881 + IAI47_00790 0.67 +0.0
167,882 - IAI47_00790 0.67 +1.8
167,990 + IAI47_00790 0.81 +1.0
167,990 + IAI47_00790 0.81 -1.6
167,990 + IAI47_00790 0.81 +1.3
167,990 + IAI47_00790 0.81 -1.4
167,990 + IAI47_00790 0.81 +2.0
167,991 - IAI47_00790 0.81 -1.4
167,991 - IAI47_00790 0.81 +0.7
167,991 - IAI47_00790 0.81 +1.2
167,991 - IAI47_00790 0.81 +1.0
167,991 - IAI47_00790 0.81 -0.8
167,991 - IAI47_00790 0.81 +0.2
167,991 - IAI47_00790 0.81 +0.7
167,991 - IAI47_00790 0.81 -1.0
167,991 - IAI47_00790 0.81 +1.5
168,043 - IAI47_00790 0.88 -1.0
168,043 - IAI47_00790 0.88 -2.8
168,120 + +1.6
168,134 + -1.4
168,134 + -1.6
168,159 + -1.5
168,160 - +0.8
168,160 - -0.8
168,166 + -1.8
168,955 - -0.8
168,955 - -2.1
168,955 - +0.2
168,955 - +1.0
169,000 - +0.2
169,000 - -1.5
169,000 - -0.8
169,000 - -0.9
169,001 + +0.0
169,001 + -0.6
169,001 + -1.6
169,002 - -1.4
169,002 - -0.4
169,002 - +0.2
169,014 + +0.1
169,159 + IAI47_00800 0.18 -1.0
169,160 - IAI47_00800 0.18 -0.7
169,160 - IAI47_00800 0.18 +1.6
169,185 + IAI47_00800 0.22 +0.2
169,185 + IAI47_00800 0.22 -0.1
169,185 + IAI47_00800 0.22 +0.0
169,186 - IAI47_00800 0.23 -1.8
169,186 - IAI47_00800 0.23 -0.5
169,221 + IAI47_00800 0.28 +2.8
169,230 + IAI47_00800 0.30 -0.4
169,258 + IAI47_00800 0.35 -0.3
169,258 + IAI47_00800 0.35 +1.0
169,258 + IAI47_00800 0.35 -0.2
169,258 + IAI47_00800 0.35 -0.3
169,258 + IAI47_00800 0.35 -0.5
169,258 + IAI47_00800 0.35 -0.1
169,258 + IAI47_00800 0.35 +0.6
169,258 + IAI47_00800 0.35 +0.6
169,258 + IAI47_00800 0.35 -0.1
169,258 + IAI47_00800 0.35 +0.5
169,258 + IAI47_00800 0.35 -0.4
169,259 - IAI47_00800 0.35 +0.0
169,259 - IAI47_00800 0.35 -1.1
169,259 - IAI47_00800 0.35 +0.7
169,259 - IAI47_00800 0.35 +0.2
169,259 - IAI47_00800 0.35 -0.5
169,259 - IAI47_00800 0.35 +1.2
169,259 - IAI47_00800 0.35 -0.0
169,259 - IAI47_00800 0.35 +0.2
169,362 - IAI47_00800 0.52 +0.5
169,369 + IAI47_00800 0.53 +1.3
169,369 + IAI47_00800 0.53 -0.0
169,370 - IAI47_00800 0.54 +0.4
169,370 - IAI47_00800 0.54 -1.3
169,370 - IAI47_00800 0.54 -1.8
169,370 - IAI47_00800 0.54 -1.3
169,427 + IAI47_00800 0.63 -1.6
169,427 + IAI47_00800 0.63 -1.4
169,428 - IAI47_00800 0.63 +0.9
169,475 + IAI47_00800 0.71 -2.1
169,475 + IAI47_00800 0.71 +0.5
169,475 + IAI47_00800 0.71 +0.5
169,477 + IAI47_00800 0.72 +0.7
169,477 + IAI47_00800 0.72 +0.7
169,478 - IAI47_00800 0.72 +1.8
169,478 - IAI47_00800 0.72 +0.9
169,505 + IAI47_00800 0.76 +0.5
169,505 + IAI47_00800 0.76 +0.4
169,505 + IAI47_00800 0.76 +0.1
169,505 + IAI47_00800 0.76 -0.3
169,506 - IAI47_00800 0.77 -0.8
169,506 - IAI47_00800 0.77 +0.4
169,506 - IAI47_00800 0.77 -0.8
169,506 - IAI47_00800 0.77 +1.1
169,534 + IAI47_00800 0.81 +0.8
169,535 - IAI47_00800 0.82 -0.5
169,615 - -1.8
169,679 + -0.3
169,736 + -1.3
169,736 + +1.1
169,736 + -0.3
169,737 - +0.0
169,737 - -0.5
169,737 - +0.3
169,737 - -1.3
169,737 - -0.2
169,749 + +1.3
169,749 + -0.5
169,750 - +1.4
169,750 - +1.9
169,839 + IAI47_00805 0.22 +0.2
169,839 + IAI47_00805 0.22 -0.6
169,839 + IAI47_00805 0.22 +1.8
169,839 + IAI47_00805 0.22 +0.5
169,839 + IAI47_00805 0.22 +0.6
169,839 + IAI47_00805 0.22 -0.8
169,839 + IAI47_00805 0.22 +0.2
169,839 + IAI47_00805 0.22 -1.8
169,839 + IAI47_00805 0.22 +1.4
169,839 + IAI47_00805 0.22 +1.2
169,839 + IAI47_00805 0.22 +1.2
169,840 - IAI47_00805 0.23 +1.0
169,840 - IAI47_00805 0.23 +0.1
169,840 - IAI47_00805 0.23 -0.8
169,840 - IAI47_00805 0.23 -0.2
169,840 - IAI47_00805 0.23 +1.2
169,843 + IAI47_00805 0.23 +1.2
169,844 - IAI47_00805 0.23 -1.4
169,844 - IAI47_00805 0.23 +0.4
169,870 + IAI47_00805 0.29 -0.9
169,929 + IAI47_00805 0.43 +1.0
169,929 + IAI47_00805 0.43 -0.2
169,929 + IAI47_00805 0.43 -0.4
169,929 + IAI47_00805 0.43 +0.6
169,930 - IAI47_00805 0.43 -0.5
169,930 - IAI47_00805 0.43 -0.3
169,930 - IAI47_00805 0.43 -0.4
169,930 - IAI47_00805 0.43 -0.2

Or see this region's nucleotide sequence