Strain Fitness in Pantoea sp. MT58 around IAI47_20835

Experiment: Ying_sugar7 rep B; time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI47_20825 and IAI47_20830 are separated by 97 nucleotidesIAI47_20830 and IAI47_20835 are separated by 29 nucleotidesIAI47_20835 and IAI47_20840 are separated by 161 nucleotides IAI47_20825: IAI47_20825 - phenylacetate--CoA ligase family protein, at 409,580 to 410,989 _20825 IAI47_20830: IAI47_20830 - DUF2000 domain-containing protein, at 411,087 to 411,509 _20830 IAI47_20835: IAI47_20835 - Dabb family protein, at 411,539 to 411,895 _20835 IAI47_20840: IAI47_20840 - Lrp/AsnC family transcriptional regulator, at 412,057 to 412,530 _20840 Position (kb) 411 412Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 410.578 kb on + strand, within IAI47_20825at 410.578 kb on + strand, within IAI47_20825at 410.578 kb on + strand, within IAI47_20825at 410.578 kb on + strand, within IAI47_20825at 410.581 kb on + strand, within IAI47_20825at 410.581 kb on + strand, within IAI47_20825at 410.582 kb on - strand, within IAI47_20825at 410.582 kb on - strand, within IAI47_20825at 410.586 kb on + strand, within IAI47_20825at 410.587 kb on - strand, within IAI47_20825at 410.606 kb on - strand, within IAI47_20825at 410.606 kb on - strand, within IAI47_20825at 410.608 kb on + strand, within IAI47_20825at 410.608 kb on + strand, within IAI47_20825at 410.608 kb on + strand, within IAI47_20825at 410.609 kb on - strand, within IAI47_20825at 410.609 kb on - strand, within IAI47_20825at 410.609 kb on - strand, within IAI47_20825at 410.611 kb on + strand, within IAI47_20825at 410.677 kb on - strand, within IAI47_20825at 410.679 kb on + strand, within IAI47_20825at 410.744 kb on - strand, within IAI47_20825at 410.776 kb on + strand, within IAI47_20825at 410.780 kb on + strand, within IAI47_20825at 410.781 kb on - strand, within IAI47_20825at 410.781 kb on - strand, within IAI47_20825at 410.804 kb on + strand, within IAI47_20825at 410.826 kb on + strand, within IAI47_20825at 410.850 kb on + strandat 410.851 kb on - strandat 410.876 kb on - strandat 410.908 kb on + strandat 410.909 kb on - strandat 410.937 kb on + strandat 410.985 kb on + strandat 410.986 kb on - strandat 410.986 kb on - strandat 411.011 kb on - strandat 411.078 kb on + strandat 411.079 kb on - strandat 411.079 kb on - strandat 411.085 kb on - strandat 411.089 kb on - strandat 411.094 kb on + strandat 411.167 kb on + strand, within IAI47_20830at 411.167 kb on + strand, within IAI47_20830at 411.202 kb on + strand, within IAI47_20830at 411.218 kb on + strand, within IAI47_20830at 411.253 kb on + strand, within IAI47_20830at 411.253 kb on + strand, within IAI47_20830at 411.253 kb on + strand, within IAI47_20830at 411.253 kb on + strand, within IAI47_20830at 411.253 kb on + strand, within IAI47_20830at 411.253 kb on + strand, within IAI47_20830at 411.253 kb on + strand, within IAI47_20830at 411.253 kb on + strand, within IAI47_20830at 411.253 kb on + strand, within IAI47_20830at 411.254 kb on - strand, within IAI47_20830at 411.254 kb on - strand, within IAI47_20830at 411.254 kb on - strand, within IAI47_20830at 411.254 kb on - strand, within IAI47_20830at 411.254 kb on - strand, within IAI47_20830at 411.254 kb on - strand, within IAI47_20830at 411.286 kb on - strand, within IAI47_20830at 411.286 kb on - strand, within IAI47_20830at 411.298 kb on + strand, within IAI47_20830at 411.298 kb on + strand, within IAI47_20830at 411.315 kb on + strand, within IAI47_20830at 411.316 kb on - strand, within IAI47_20830at 411.316 kb on - strand, within IAI47_20830at 411.316 kb on - strand, within IAI47_20830at 411.316 kb on - strand, within IAI47_20830at 411.334 kb on + strand, within IAI47_20830at 411.338 kb on + strand, within IAI47_20830at 411.338 kb on + strand, within IAI47_20830at 411.349 kb on + strand, within IAI47_20830at 411.350 kb on - strand, within IAI47_20830at 411.350 kb on - strand, within IAI47_20830at 411.374 kb on + strand, within IAI47_20830at 411.473 kb on + strandat 411.474 kb on - strandat 411.479 kb on + strandat 411.479 kb on + strandat 411.479 kb on + strandat 411.513 kb on - strandat 411.540 kb on + strandat 411.541 kb on - strandat 411.588 kb on - strand, within IAI47_20835at 411.588 kb on - strand, within IAI47_20835at 411.588 kb on - strand, within IAI47_20835at 411.592 kb on + strand, within IAI47_20835at 411.593 kb on - strand, within IAI47_20835at 411.593 kb on - strand, within IAI47_20835at 411.613 kb on + strand, within IAI47_20835at 411.637 kb on + strand, within IAI47_20835at 411.637 kb on + strand, within IAI47_20835at 411.640 kb on - strand, within IAI47_20835at 411.682 kb on + strand, within IAI47_20835at 411.682 kb on + strand, within IAI47_20835at 411.682 kb on + strand, within IAI47_20835at 411.682 kb on + strand, within IAI47_20835at 411.682 kb on + strand, within IAI47_20835at 411.683 kb on - strand, within IAI47_20835at 411.683 kb on - strand, within IAI47_20835at 411.683 kb on - strand, within IAI47_20835at 411.683 kb on - strand, within IAI47_20835at 411.684 kb on + strand, within IAI47_20835at 411.684 kb on + strand, within IAI47_20835at 411.684 kb on + strand, within IAI47_20835at 411.685 kb on - strand, within IAI47_20835at 411.685 kb on - strand, within IAI47_20835at 411.722 kb on + strand, within IAI47_20835at 411.723 kb on - strand, within IAI47_20835at 411.757 kb on + strand, within IAI47_20835at 411.758 kb on - strand, within IAI47_20835at 411.782 kb on + strand, within IAI47_20835at 411.783 kb on - strand, within IAI47_20835at 411.791 kb on - strand, within IAI47_20835at 411.794 kb on - strand, within IAI47_20835at 411.794 kb on - strand, within IAI47_20835at 411.833 kb on - strand, within IAI47_20835at 411.833 kb on - strand, within IAI47_20835at 411.833 kb on - strand, within IAI47_20835at 411.871 kb on + strandat 411.871 kb on + strandat 411.872 kb on - strandat 411.895 kb on + strandat 411.895 kb on + strandat 411.895 kb on + strandat 411.895 kb on + strandat 411.895 kb on + strandat 411.896 kb on - strandat 411.924 kb on + strandat 411.951 kb on + strandat 411.978 kb on - strandat 411.981 kb on + strandat 411.982 kb on - strandat 411.982 kb on - strandat 411.983 kb on + strandat 411.984 kb on - strandat 412.038 kb on + strandat 412.077 kb on + strandat 412.077 kb on + strandat 412.077 kb on + strandat 412.078 kb on - strandat 412.085 kb on + strandat 412.086 kb on - strandat 412.142 kb on + strand, within IAI47_20840at 412.142 kb on + strand, within IAI47_20840at 412.142 kb on + strand, within IAI47_20840at 412.220 kb on + strand, within IAI47_20840at 412.220 kb on + strand, within IAI47_20840at 412.348 kb on + strand, within IAI47_20840at 412.348 kb on + strand, within IAI47_20840at 412.348 kb on + strand, within IAI47_20840at 412.348 kb on + strand, within IAI47_20840at 412.349 kb on - strand, within IAI47_20840at 412.354 kb on - strand, within IAI47_20840at 412.408 kb on + strand, within IAI47_20840at 412.504 kb on + strandat 412.505 kb on - strandat 412.505 kb on - strandat 412.509 kb on + strandat 412.509 kb on + strandat 412.510 kb on - strandat 412.510 kb on - strandat 412.510 kb on - strandat 412.510 kb on - strandat 412.513 kb on - strandat 412.513 kb on - strandat 412.528 kb on + strandat 412.528 kb on + strandat 412.528 kb on + strandat 412.529 kb on - strandat 412.529 kb on - strandat 412.601 kb on + strandat 412.787 kb on + strandat 412.787 kb on + strandat 412.787 kb on + strandat 412.788 kb on - strandat 412.807 kb on - strandat 412.808 kb on + strandat 412.809 kb on - strandat 412.809 kb on - strandat 412.809 kb on - strandat 412.813 kb on + strandat 412.853 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3
remove
410,578 + IAI47_20825 0.71 +0.4
410,578 + IAI47_20825 0.71 -0.5
410,578 + IAI47_20825 0.71 -1.4
410,578 + IAI47_20825 0.71 -0.4
410,581 + IAI47_20825 0.71 -0.0
410,581 + IAI47_20825 0.71 +1.0
410,582 - IAI47_20825 0.71 +0.8
410,582 - IAI47_20825 0.71 -0.6
410,586 + IAI47_20825 0.71 -0.1
410,587 - IAI47_20825 0.71 -1.2
410,606 - IAI47_20825 0.73 +0.8
410,606 - IAI47_20825 0.73 +0.5
410,608 + IAI47_20825 0.73 +0.5
410,608 + IAI47_20825 0.73 -0.5
410,608 + IAI47_20825 0.73 -0.1
410,609 - IAI47_20825 0.73 -0.3
410,609 - IAI47_20825 0.73 -0.2
410,609 - IAI47_20825 0.73 +0.6
410,611 + IAI47_20825 0.73 -2.4
410,677 - IAI47_20825 0.78 -1.3
410,679 + IAI47_20825 0.78 -1.1
410,744 - IAI47_20825 0.83 +0.3
410,776 + IAI47_20825 0.85 -0.4
410,780 + IAI47_20825 0.85 +1.9
410,781 - IAI47_20825 0.85 -1.6
410,781 - IAI47_20825 0.85 -0.8
410,804 + IAI47_20825 0.87 +1.8
410,826 + IAI47_20825 0.88 +0.9
410,850 + +2.2
410,851 - +0.1
410,876 - -0.2
410,908 + -1.2
410,909 - +2.7
410,937 + -0.4
410,985 + +0.8
410,986 - -2.2
410,986 - +0.2
411,011 - +2.2
411,078 + +0.0
411,079 - -0.5
411,079 - +0.3
411,085 - -2.0
411,089 - -1.4
411,094 + +0.6
411,167 + IAI47_20830 0.19 +1.2
411,167 + IAI47_20830 0.19 -0.0
411,202 + IAI47_20830 0.27 +0.4
411,218 + IAI47_20830 0.31 -0.2
411,253 + IAI47_20830 0.39 +0.2
411,253 + IAI47_20830 0.39 -1.0
411,253 + IAI47_20830 0.39 -0.8
411,253 + IAI47_20830 0.39 +2.4
411,253 + IAI47_20830 0.39 -0.1
411,253 + IAI47_20830 0.39 +0.4
411,253 + IAI47_20830 0.39 +0.9
411,253 + IAI47_20830 0.39 +0.6
411,253 + IAI47_20830 0.39 +0.1
411,254 - IAI47_20830 0.39 -1.4
411,254 - IAI47_20830 0.39 -0.9
411,254 - IAI47_20830 0.39 +0.8
411,254 - IAI47_20830 0.39 +0.2
411,254 - IAI47_20830 0.39 -0.8
411,254 - IAI47_20830 0.39 +0.2
411,286 - IAI47_20830 0.47 -0.2
411,286 - IAI47_20830 0.47 +0.2
411,298 + IAI47_20830 0.50 -1.6
411,298 + IAI47_20830 0.50 +1.6
411,315 + IAI47_20830 0.54 -1.0
411,316 - IAI47_20830 0.54 +1.9
411,316 - IAI47_20830 0.54 -0.1
411,316 - IAI47_20830 0.54 -0.1
411,316 - IAI47_20830 0.54 -0.8
411,334 + IAI47_20830 0.58 -0.8
411,338 + IAI47_20830 0.59 -0.8
411,338 + IAI47_20830 0.59 +1.0
411,349 + IAI47_20830 0.62 -0.4
411,350 - IAI47_20830 0.62 -0.8
411,350 - IAI47_20830 0.62 +1.1
411,374 + IAI47_20830 0.68 +0.0
411,473 + +0.0
411,474 - -0.8
411,479 + -0.5
411,479 + +0.2
411,479 + -1.4
411,513 - -0.8
411,540 + -0.8
411,541 - +0.7
411,588 - IAI47_20835 0.14 -1.2
411,588 - IAI47_20835 0.14 -4.0
411,588 - IAI47_20835 0.14 +0.2
411,592 + IAI47_20835 0.15 -0.1
411,593 - IAI47_20835 0.15 +1.8
411,593 - IAI47_20835 0.15 +1.1
411,613 + IAI47_20835 0.21 +0.1
411,637 + IAI47_20835 0.27 -2.6
411,637 + IAI47_20835 0.27 -0.4
411,640 - IAI47_20835 0.28 +0.7
411,682 + IAI47_20835 0.40 -0.3
411,682 + IAI47_20835 0.40 +2.0
411,682 + IAI47_20835 0.40 +1.5
411,682 + IAI47_20835 0.40 -1.8
411,682 + IAI47_20835 0.40 +2.1
411,683 - IAI47_20835 0.40 +0.3
411,683 - IAI47_20835 0.40 -0.8
411,683 - IAI47_20835 0.40 +0.9
411,683 - IAI47_20835 0.40 +1.2
411,684 + IAI47_20835 0.41 -0.5
411,684 + IAI47_20835 0.41 +1.6
411,684 + IAI47_20835 0.41 -0.5
411,685 - IAI47_20835 0.41 -1.4
411,685 - IAI47_20835 0.41 +1.8
411,722 + IAI47_20835 0.51 -0.3
411,723 - IAI47_20835 0.52 -0.8
411,757 + IAI47_20835 0.61 -0.9
411,758 - IAI47_20835 0.61 +1.7
411,782 + IAI47_20835 0.68 -0.1
411,783 - IAI47_20835 0.68 -1.4
411,791 - IAI47_20835 0.71 +0.6
411,794 - IAI47_20835 0.71 -0.4
411,794 - IAI47_20835 0.71 -1.0
411,833 - IAI47_20835 0.82 -0.1
411,833 - IAI47_20835 0.82 -2.6
411,833 - IAI47_20835 0.82 +1.8
411,871 + -0.2
411,871 + +1.2
411,872 - +0.0
411,895 + +0.8
411,895 + +0.2
411,895 + -0.2
411,895 + -0.1
411,895 + +0.6
411,896 - -0.3
411,924 + -0.0
411,951 + -0.2
411,978 - -1.0
411,981 + +0.5
411,982 - +0.4
411,982 - -1.3
411,983 + -0.6
411,984 - +0.7
412,038 + -0.1
412,077 + -0.1
412,077 + -0.1
412,077 + -0.1
412,078 - -0.5
412,085 + +1.3
412,086 - +1.4
412,142 + IAI47_20840 0.18 -0.2
412,142 + IAI47_20840 0.18 +0.9
412,142 + IAI47_20840 0.18 +0.8
412,220 + IAI47_20840 0.34 +0.4
412,220 + IAI47_20840 0.34 -0.1
412,348 + IAI47_20840 0.61 +0.9
412,348 + IAI47_20840 0.61 +0.9
412,348 + IAI47_20840 0.61 -0.8
412,348 + IAI47_20840 0.61 +0.8
412,349 - IAI47_20840 0.62 -0.7
412,354 - IAI47_20840 0.63 +1.6
412,408 + IAI47_20840 0.74 -1.0
412,504 + -1.4
412,505 - +1.0
412,505 - +2.1
412,509 + -0.0
412,509 + -0.2
412,510 - -0.5
412,510 - +2.1
412,510 - -0.0
412,510 - +0.2
412,513 - +1.5
412,513 - +0.6
412,528 + +0.8
412,528 + -1.1
412,528 + -1.0
412,529 - +1.1
412,529 - -1.5
412,601 + -1.4
412,787 + +1.2
412,787 + +0.6
412,787 + -1.0
412,788 - +3.4
412,807 - -0.8
412,808 + +0.2
412,809 - +0.4
412,809 - -0.7
412,809 - +0.2
412,813 + -0.2
412,853 - -1.4

Or see this region's nucleotide sequence