Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_20075 and IAI47_20080 are separated by 239 nucleotides IAI47_20080 and IAI47_20085 are separated by 2 nucleotides IAI47_20085 and IAI47_20090 are separated by 2 nucleotides
IAI47_20075: IAI47_20075 - methyl-accepting chemotaxis protein, at 246,775 to 248,715
_20075
IAI47_20080: IAI47_20080 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 248,955 to 250,037
_20080
IAI47_20085: IAI47_20085 - carbohydrate kinase family protein, at 250,040 to 250,987
_20085
IAI47_20090: IAI47_20090 - carbohydrate ABC transporter permease, at 250,990 to 251,829
_20090
Position (kb) 248
249
250
251 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 247.989 kb on - strand, within IAI47_20075 at 247.989 kb on - strand, within IAI47_20075 at 248.083 kb on - strand at 248.083 kb on - strand, within IAI47_20075 at 248.103 kb on + strand, within IAI47_20075 at 248.103 kb on + strand, within IAI47_20075 at 248.103 kb on + strand, within IAI47_20075 at 248.163 kb on + strand, within IAI47_20075 at 248.250 kb on + strand, within IAI47_20075 at 248.251 kb on - strand, within IAI47_20075 at 248.286 kb on + strand, within IAI47_20075 at 248.370 kb on + strand, within IAI47_20075 at 248.370 kb on + strand, within IAI47_20075 at 248.370 kb on + strand, within IAI47_20075 at 248.462 kb on + strand, within IAI47_20075 at 248.475 kb on + strand, within IAI47_20075 at 248.476 kb on - strand, within IAI47_20075 at 248.538 kb on + strand at 248.539 kb on - strand at 248.539 kb on - strand at 248.681 kb on + strand at 248.681 kb on + strand at 248.681 kb on + strand at 248.681 kb on + strand at 248.713 kb on + strand at 248.713 kb on + strand at 248.714 kb on - strand at 248.735 kb on + strand at 248.735 kb on + strand at 248.735 kb on + strand at 248.735 kb on + strand at 248.735 kb on + strand at 248.735 kb on + strand at 248.736 kb on - strand at 248.742 kb on + strand at 248.742 kb on + strand at 248.743 kb on - strand at 248.834 kb on + strand at 248.834 kb on + strand at 248.834 kb on + strand at 248.834 kb on + strand at 248.835 kb on - strand at 248.835 kb on - strand at 248.835 kb on - strand at 248.835 kb on - strand at 248.870 kb on + strand at 248.888 kb on + strand at 248.888 kb on + strand at 248.888 kb on + strand at 248.888 kb on + strand at 248.888 kb on + strand at 248.888 kb on + strand at 248.889 kb on - strand at 248.889 kb on - strand at 248.896 kb on + strand at 248.896 kb on + strand at 248.896 kb on + strand at 248.896 kb on + strand at 248.896 kb on + strand at 248.897 kb on - strand at 248.897 kb on - strand at 248.912 kb on + strand at 248.913 kb on - strand at 248.953 kb on - strand at 249.016 kb on - strand at 249.032 kb on + strand at 249.054 kb on - strand at 249.071 kb on + strand, within IAI47_20080 at 249.071 kb on + strand, within IAI47_20080 at 249.071 kb on + strand, within IAI47_20080 at 249.071 kb on + strand, within IAI47_20080 at 249.071 kb on + strand, within IAI47_20080 at 249.071 kb on + strand, within IAI47_20080 at 249.072 kb on - strand, within IAI47_20080 at 249.134 kb on + strand, within IAI47_20080 at 249.135 kb on - strand, within IAI47_20080 at 249.135 kb on - strand, within IAI47_20080 at 249.135 kb on - strand, within IAI47_20080 at 249.139 kb on - strand, within IAI47_20080 at 249.263 kb on + strand, within IAI47_20080 at 249.339 kb on - strand, within IAI47_20080 at 249.359 kb on + strand, within IAI47_20080 at 249.373 kb on + strand, within IAI47_20080 at 249.373 kb on + strand, within IAI47_20080 at 249.373 kb on + strand, within IAI47_20080 at 249.373 kb on + strand, within IAI47_20080 at 249.374 kb on - strand, within IAI47_20080 at 249.420 kb on + strand, within IAI47_20080 at 249.472 kb on + strand, within IAI47_20080 at 249.472 kb on + strand, within IAI47_20080 at 249.472 kb on + strand, within IAI47_20080 at 249.472 kb on + strand, within IAI47_20080 at 249.473 kb on - strand, within IAI47_20080 at 249.473 kb on - strand, within IAI47_20080 at 249.473 kb on - strand, within IAI47_20080 at 249.473 kb on - strand, within IAI47_20080 at 249.473 kb on - strand, within IAI47_20080 at 249.509 kb on + strand, within IAI47_20080 at 249.510 kb on - strand, within IAI47_20080 at 249.510 kb on - strand, within IAI47_20080 at 249.510 kb on - strand, within IAI47_20080 at 249.510 kb on - strand, within IAI47_20080 at 249.530 kb on + strand, within IAI47_20080 at 249.530 kb on + strand, within IAI47_20080 at 249.530 kb on + strand, within IAI47_20080 at 249.530 kb on + strand, within IAI47_20080 at 249.530 kb on + strand, within IAI47_20080 at 249.531 kb on - strand, within IAI47_20080 at 249.534 kb on + strand, within IAI47_20080 at 249.534 kb on + strand, within IAI47_20080 at 249.535 kb on - strand, within IAI47_20080 at 249.535 kb on - strand, within IAI47_20080 at 249.535 kb on - strand, within IAI47_20080 at 249.535 kb on - strand, within IAI47_20080 at 249.535 kb on - strand, within IAI47_20080 at 249.576 kb on + strand, within IAI47_20080 at 249.576 kb on + strand, within IAI47_20080 at 249.576 kb on + strand, within IAI47_20080 at 249.576 kb on + strand, within IAI47_20080 at 249.577 kb on - strand, within IAI47_20080 at 249.577 kb on - strand, within IAI47_20080 at 249.577 kb on - strand, within IAI47_20080 at 249.577 kb on - strand, within IAI47_20080 at 249.577 kb on - strand, within IAI47_20080 at 249.613 kb on - strand, within IAI47_20080 at 249.657 kb on + strand, within IAI47_20080 at 249.658 kb on - strand, within IAI47_20080 at 249.658 kb on - strand, within IAI47_20080 at 249.732 kb on + strand, within IAI47_20080 at 249.787 kb on + strand, within IAI47_20080 at 249.787 kb on + strand, within IAI47_20080 at 249.787 kb on + strand, within IAI47_20080 at 249.787 kb on + strand, within IAI47_20080 at 249.787 kb on + strand, within IAI47_20080 at 249.787 kb on + strand, within IAI47_20080 at 249.788 kb on - strand, within IAI47_20080 at 249.788 kb on - strand, within IAI47_20080 at 249.788 kb on - strand, within IAI47_20080 at 249.809 kb on + strand, within IAI47_20080 at 249.849 kb on - strand, within IAI47_20080 at 249.849 kb on - strand, within IAI47_20080 at 249.857 kb on + strand, within IAI47_20080 at 249.858 kb on - strand, within IAI47_20080 at 249.858 kb on - strand, within IAI47_20080 at 249.858 kb on - strand, within IAI47_20080 at 249.878 kb on + strand, within IAI47_20080 at 249.879 kb on - strand, within IAI47_20080 at 249.879 kb on - strand, within IAI47_20080 at 249.945 kb on - strand at 249.966 kb on + strand at 249.966 kb on + strand at 249.996 kb on - strand at 250.000 kb on + strand at 250.017 kb on + strand at 250.017 kb on + strand at 250.018 kb on - strand at 250.018 kb on - strand at 250.018 kb on - strand at 250.018 kb on - strand at 250.018 kb on - strand at 250.018 kb on - strand at 250.058 kb on + strand at 250.059 kb on - strand at 250.103 kb on + strand at 250.103 kb on + strand at 250.103 kb on + strand at 250.104 kb on - strand at 250.104 kb on - strand at 250.104 kb on - strand at 250.104 kb on - strand at 250.162 kb on - strand, within IAI47_20085 at 250.190 kb on - strand, within IAI47_20085 at 250.190 kb on - strand, within IAI47_20085 at 250.190 kb on - strand, within IAI47_20085 at 250.221 kb on - strand, within IAI47_20085 at 250.294 kb on + strand, within IAI47_20085 at 250.294 kb on + strand, within IAI47_20085 at 250.294 kb on + strand, within IAI47_20085 at 250.294 kb on + strand, within IAI47_20085 at 250.294 kb on + strand, within IAI47_20085 at 250.294 kb on + strand, within IAI47_20085 at 250.295 kb on - strand, within IAI47_20085 at 250.427 kb on - strand, within IAI47_20085 at 250.427 kb on - strand, within IAI47_20085 at 250.508 kb on + strand, within IAI47_20085 at 250.509 kb on - strand, within IAI47_20085 at 250.580 kb on - strand, within IAI47_20085 at 250.605 kb on - strand, within IAI47_20085 at 250.639 kb on + strand, within IAI47_20085 at 250.639 kb on + strand, within IAI47_20085 at 250.639 kb on + strand, within IAI47_20085 at 250.640 kb on - strand, within IAI47_20085 at 250.642 kb on + strand, within IAI47_20085 at 250.642 kb on + strand, within IAI47_20085 at 250.642 kb on + strand, within IAI47_20085 at 250.643 kb on - strand, within IAI47_20085 at 250.643 kb on - strand, within IAI47_20085 at 250.719 kb on + strand, within IAI47_20085 at 250.719 kb on + strand, within IAI47_20085 at 250.720 kb on - strand, within IAI47_20085 at 250.798 kb on + strand, within IAI47_20085 at 250.799 kb on - strand, within IAI47_20085 at 250.799 kb on - strand, within IAI47_20085 at 250.843 kb on + strand, within IAI47_20085 at 250.843 kb on + strand, within IAI47_20085 at 250.866 kb on - strand, within IAI47_20085 at 250.866 kb on - strand, within IAI47_20085 at 250.866 kb on - strand, within IAI47_20085 at 250.921 kb on + strand at 250.921 kb on + strand at 250.921 kb on + strand at 250.921 kb on + strand at 250.931 kb on + strand at 250.932 kb on - strand at 250.932 kb on - strand at 250.942 kb on + strand at 250.942 kb on + strand at 250.942 kb on + strand at 250.942 kb on + strand at 250.942 kb on + strand at 250.942 kb on + strand at 250.942 kb on + strand at 250.942 kb on + strand at 250.943 kb on - strand at 250.943 kb on - strand at 250.944 kb on - strand at 250.959 kb on + strand at 250.959 kb on + strand at 250.959 kb on + strand at 250.959 kb on + strand at 250.959 kb on + strand at 250.959 kb on + strand at 250.959 kb on + strand at 250.960 kb on - strand at 250.960 kb on - strand at 250.960 kb on - strand at 250.981 kb on + strand at 250.981 kb on + strand at 250.981 kb on + strand at 250.981 kb on + strand at 250.981 kb on + strand at 250.982 kb on - strand at 250.987 kb on + strand at 250.987 kb on + strand at 250.987 kb on + strand at 250.987 kb on + strand at 250.988 kb on - strand at 250.988 kb on - strand at 250.991 kb on + strand at 250.991 kb on + strand at 250.991 kb on + strand at 250.991 kb on + strand at 250.992 kb on - strand at 250.992 kb on - strand at 250.992 kb on - strand at 250.998 kb on + strand at 250.999 kb on - strand at 250.999 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 247,989 - IAI47_20075 0.63 -1.1 247,989 - IAI47_20075 0.63 -0.8 248,083 - -0.8 248,083 - IAI47_20075 0.67 +1.3 248,103 + IAI47_20075 0.68 -1.4 248,103 + IAI47_20075 0.68 -1.4 248,103 + IAI47_20075 0.68 -0.1 248,163 + IAI47_20075 0.72 -1.1 248,250 + IAI47_20075 0.76 -1.5 248,251 - IAI47_20075 0.76 -0.2 248,286 + IAI47_20075 0.78 +0.2 248,370 + IAI47_20075 0.82 +1.2 248,370 + IAI47_20075 0.82 +0.8 248,370 + IAI47_20075 0.82 -0.4 248,462 + IAI47_20075 0.87 -2.4 248,475 + IAI47_20075 0.88 +0.6 248,476 - IAI47_20075 0.88 -0.1 248,538 + +0.9 248,539 - +0.4 248,539 - -0.5 248,681 + +1.8 248,681 + +0.2 248,681 + -0.4 248,681 + +0.9 248,713 + +0.7 248,713 + -0.1 248,714 - -0.7 248,735 + +1.4 248,735 + -0.7 248,735 + -0.7 248,735 + -0.2 248,735 + +0.6 248,735 + -1.1 248,736 - +0.2 248,742 + -2.1 248,742 + +1.5 248,743 - -1.0 248,834 + -0.4 248,834 + -1.1 248,834 + +0.2 248,834 + +0.5 248,835 - +0.8 248,835 - +0.5 248,835 - -1.4 248,835 - -0.8 248,870 + +0.8 248,888 + +0.8 248,888 + -1.4 248,888 + +0.6 248,888 + -0.9 248,888 + +0.2 248,888 + -0.8 248,889 - -1.1 248,889 - +1.8 248,896 + +2.1 248,896 + -0.8 248,896 + -1.0 248,896 + +0.0 248,896 + -2.1 248,897 - +0.6 248,897 - +0.8 248,912 + +0.7 248,913 - +0.5 248,953 - +0.6 249,016 - +0.2 249,032 + +0.6 249,054 - -1.3 249,071 + IAI47_20080 0.11 +0.6 249,071 + IAI47_20080 0.11 +1.5 249,071 + IAI47_20080 0.11 +1.5 249,071 + IAI47_20080 0.11 +0.6 249,071 + IAI47_20080 0.11 +0.5 249,071 + IAI47_20080 0.11 +0.4 249,072 - IAI47_20080 0.11 +1.2 249,134 + IAI47_20080 0.17 -0.5 249,135 - IAI47_20080 0.17 +2.6 249,135 - IAI47_20080 0.17 +0.6 249,135 - IAI47_20080 0.17 +1.8 249,139 - IAI47_20080 0.17 -0.2 249,263 + IAI47_20080 0.28 +0.2 249,339 - IAI47_20080 0.35 +0.0 249,359 + IAI47_20080 0.37 -0.5 249,373 + IAI47_20080 0.39 +2.4 249,373 + IAI47_20080 0.39 -0.1 249,373 + IAI47_20080 0.39 +1.8 249,373 + IAI47_20080 0.39 +1.6 249,374 - IAI47_20080 0.39 -2.1 249,420 + IAI47_20080 0.43 +0.2 249,472 + IAI47_20080 0.48 -0.5 249,472 + IAI47_20080 0.48 +1.1 249,472 + IAI47_20080 0.48 +0.8 249,472 + IAI47_20080 0.48 -1.6 249,473 - IAI47_20080 0.48 -2.1 249,473 - IAI47_20080 0.48 +0.2 249,473 - IAI47_20080 0.48 -1.1 249,473 - IAI47_20080 0.48 -0.4 249,473 - IAI47_20080 0.48 -0.2 249,509 + IAI47_20080 0.51 +1.0 249,510 - IAI47_20080 0.51 +0.3 249,510 - IAI47_20080 0.51 +2.0 249,510 - IAI47_20080 0.51 +0.0 249,510 - IAI47_20080 0.51 +0.8 249,530 + IAI47_20080 0.53 +1.4 249,530 + IAI47_20080 0.53 -0.3 249,530 + IAI47_20080 0.53 -0.0 249,530 + IAI47_20080 0.53 +0.5 249,530 + IAI47_20080 0.53 +0.6 249,531 - IAI47_20080 0.53 +1.1 249,534 + IAI47_20080 0.53 +0.8 249,534 + IAI47_20080 0.53 +0.7 249,535 - IAI47_20080 0.54 +0.2 249,535 - IAI47_20080 0.54 -1.4 249,535 - IAI47_20080 0.54 +0.9 249,535 - IAI47_20080 0.54 +0.2 249,535 - IAI47_20080 0.54 -1.5 249,576 + IAI47_20080 0.57 +0.5 249,576 + IAI47_20080 0.57 +1.0 249,576 + IAI47_20080 0.57 +1.1 249,576 + IAI47_20080 0.57 -0.7 249,577 - IAI47_20080 0.57 +0.4 249,577 - IAI47_20080 0.57 +0.2 249,577 - IAI47_20080 0.57 +1.4 249,577 - IAI47_20080 0.57 +0.5 249,577 - IAI47_20080 0.57 -1.7 249,613 - IAI47_20080 0.61 +0.2 249,657 + IAI47_20080 0.65 -0.9 249,658 - IAI47_20080 0.65 -0.5 249,658 - IAI47_20080 0.65 -0.1 249,732 + IAI47_20080 0.72 +1.2 249,787 + IAI47_20080 0.77 +2.2 249,787 + IAI47_20080 0.77 -3.0 249,787 + IAI47_20080 0.77 +0.6 249,787 + IAI47_20080 0.77 -0.3 249,787 + IAI47_20080 0.77 -1.1 249,787 + IAI47_20080 0.77 +0.8 249,788 - IAI47_20080 0.77 +0.6 249,788 - IAI47_20080 0.77 -0.4 249,788 - IAI47_20080 0.77 +1.1 249,809 + IAI47_20080 0.79 +0.6 249,849 - IAI47_20080 0.83 +0.8 249,849 - IAI47_20080 0.83 -0.1 249,857 + IAI47_20080 0.83 +0.8 249,858 - IAI47_20080 0.83 +0.7 249,858 - IAI47_20080 0.83 -1.4 249,858 - IAI47_20080 0.83 +3.0 249,878 + IAI47_20080 0.85 +1.2 249,879 - IAI47_20080 0.85 +1.1 249,879 - IAI47_20080 0.85 +1.2 249,945 - -0.1 249,966 + -1.0 249,966 + -0.6 249,996 - +0.8 250,000 + -0.1 250,017 + +1.5 250,017 + +0.9 250,018 - -0.3 250,018 - +0.7 250,018 - +1.3 250,018 - +0.2 250,018 - +0.7 250,018 - +1.5 250,058 + +0.0 250,059 - -0.5 250,103 + +0.6 250,103 + +0.2 250,103 + -0.9 250,104 - +0.7 250,104 - -1.9 250,104 - +0.8 250,104 - +0.2 250,162 - IAI47_20085 0.13 +1.2 250,190 - IAI47_20085 0.16 +1.9 250,190 - IAI47_20085 0.16 +2.4 250,190 - IAI47_20085 0.16 -1.6 250,221 - IAI47_20085 0.19 +0.1 250,294 + IAI47_20085 0.27 +0.0 250,294 + IAI47_20085 0.27 +0.2 250,294 + IAI47_20085 0.27 +2.2 250,294 + IAI47_20085 0.27 -1.4 250,294 + IAI47_20085 0.27 -1.1 250,294 + IAI47_20085 0.27 +1.8 250,295 - IAI47_20085 0.27 -1.4 250,427 - IAI47_20085 0.41 -1.0 250,427 - IAI47_20085 0.41 +1.2 250,508 + IAI47_20085 0.49 -0.3 250,509 - IAI47_20085 0.49 -0.6 250,580 - IAI47_20085 0.57 +1.2 250,605 - IAI47_20085 0.60 +0.9 250,639 + IAI47_20085 0.63 +1.0 250,639 + IAI47_20085 0.63 +2.2 250,639 + IAI47_20085 0.63 -0.4 250,640 - IAI47_20085 0.63 +0.2 250,642 + IAI47_20085 0.64 -1.2 250,642 + IAI47_20085 0.64 +0.2 250,642 + IAI47_20085 0.64 -1.4 250,643 - IAI47_20085 0.64 +0.5 250,643 - IAI47_20085 0.64 -0.6 250,719 + IAI47_20085 0.72 +0.3 250,719 + IAI47_20085 0.72 -2.0 250,720 - IAI47_20085 0.72 -1.8 250,798 + IAI47_20085 0.80 +0.0 250,799 - IAI47_20085 0.80 +0.6 250,799 - IAI47_20085 0.80 -0.2 250,843 + IAI47_20085 0.85 +1.1 250,843 + IAI47_20085 0.85 +2.2 250,866 - IAI47_20085 0.87 -0.5 250,866 - IAI47_20085 0.87 -1.8 250,866 - IAI47_20085 0.87 +0.0 250,921 + +0.8 250,921 + -1.0 250,921 + +1.7 250,921 + +1.5 250,931 + +0.3 250,932 - +0.9 250,932 - +0.2 250,942 + -0.1 250,942 + +0.2 250,942 + +0.2 250,942 + +0.4 250,942 + -0.0 250,942 + -1.4 250,942 + -0.1 250,942 + +1.2 250,943 - +0.7 250,943 - +1.9 250,944 - -0.7 250,959 + +0.6 250,959 + -2.6 250,959 + +0.2 250,959 + +0.4 250,959 + -0.6 250,959 + -0.2 250,959 + +1.8 250,960 - -1.4 250,960 - +0.2 250,960 - -0.3 250,981 + -1.0 250,981 + +2.2 250,981 + -0.5 250,981 + -3.1 250,981 + +1.6 250,982 - +0.6 250,987 + +1.4 250,987 + -0.3 250,987 + +0.5 250,987 + -0.4 250,988 - +0.6 250,988 - +0.2 250,991 + +0.8 250,991 + +0.4 250,991 + +0.4 250,991 + -1.0 250,992 - +2.1 250,992 - +2.4 250,992 - +0.8 250,998 + +1.4 250,999 - -0.8 250,999 - -2.6
Or see this region's nucleotide sequence