Strain Fitness in Pantoea sp. MT58 around IAI47_18670

Experiment: Ying_sugar7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 3
3,982,062	+		IAI47_18665	0.62	-1.4
3,982,062	+		IAI47_18665	0.62	-0.4
3,982,062	+		IAI47_18665	0.62	-0.1
3,982,063	-		IAI47_18665	0.62	-1.3
3,982,090	+		IAI47_18665	0.64	-1.3
3,982,090	+		IAI47_18665	0.64	+0.9
3,982,090	+		IAI47_18665	0.64	-0.2
3,982,090	+		IAI47_18665	0.64	+0.3
3,982,090	+		IAI47_18665	0.64	+0.2
3,982,091	-		IAI47_18665	0.64	+0.3
3,982,091	-		IAI47_18665	0.64	+0.7
3,982,091	-		IAI47_18665	0.64	-0.7
3,982,091	-		IAI47_18665	0.64	+0.5
3,982,091	-		IAI47_18665	0.64	-0.4
3,982,114	+		IAI47_18665	0.65	+0.1
3,982,115	-		IAI47_18665	0.65	-0.3
3,982,136	+		IAI47_18665	0.67	-0.9
3,982,136	+		IAI47_18665	0.67	+1.3
3,982,136	+		IAI47_18665	0.67	-0.2
3,982,136	+		IAI47_18665	0.67	-0.7
3,982,226	+				-0.5
3,982,226	+		IAI47_18665	0.72	-1.3
3,982,226	+		IAI47_18665	0.72	-0.3
3,982,227	-		IAI47_18665	0.72	-0.8
3,982,227	-		IAI47_18665	0.72	+0.4
3,982,227	-		IAI47_18665	0.72	+1.3
3,982,277	+		IAI47_18665	0.75	+0.3
3,982,277	+		IAI47_18665	0.75	-1.3
3,982,277	+		IAI47_18665	0.75	-0.4
3,982,277	+		IAI47_18665	0.75	+0.5
3,982,277	+		IAI47_18665	0.75	+0.7
3,982,278	-		IAI47_18665	0.75	-0.7
3,982,278	-		IAI47_18665	0.75	+1.7
3,982,278	-		IAI47_18665	0.75	+0.6
3,982,278	-		IAI47_18665	0.75	+0.7
3,982,278	-		IAI47_18665	0.75	-0.7
3,982,278	-		IAI47_18665	0.75	+1.4
3,982,278	-		IAI47_18665	0.75	-0.0
3,982,280	+		IAI47_18665	0.75	-0.8
3,982,280	+		IAI47_18665	0.75	+0.6
3,982,281	-		IAI47_18665	0.75	-0.7
3,982,281	-		IAI47_18665	0.75	+0.1
3,982,281	-		IAI47_18665	0.75	+0.3
3,982,281	-		IAI47_18665	0.75	+0.3
3,982,340	-		IAI47_18665	0.79	-1.7
3,982,355	+		IAI47_18665	0.80	-0.2
3,982,355	+		IAI47_18665	0.80	-0.3
3,982,367	+		IAI47_18665	0.80	+0.3
3,982,367	+		IAI47_18665	0.80	+0.3
3,982,368	-		IAI47_18665	0.80	+0.7
3,982,407	+		IAI47_18665	0.83	+0.7
3,982,407	+		IAI47_18665	0.83	-0.8
3,982,408	-		IAI47_18665	0.83	-0.4
3,982,408	-		IAI47_18665	0.83	+0.3
3,982,408	-		IAI47_18665	0.83	+1.0
3,982,408	-		IAI47_18665	0.83	+0.0
3,982,408	-		IAI47_18665	0.83	+0.1
3,982,408	-		IAI47_18665	0.83	+0.7
3,982,429	+		IAI47_18665	0.84	+0.6
3,982,429	+		IAI47_18665	0.84	+0.4
3,982,429	+		IAI47_18665	0.84	-1.0
3,982,429	+		IAI47_18665	0.84	-0.8
3,982,429	+		IAI47_18665	0.84	-0.7
3,982,429	+		IAI47_18665	0.84	+0.7
3,982,429	+		IAI47_18665	0.84	+0.8
3,982,429	+		IAI47_18665	0.84	+0.5
3,982,429	+		IAI47_18665	0.84	+0.3
3,982,429	+		IAI47_18665	0.84	-0.3
3,982,429	+		IAI47_18665	0.84	+0.8
3,982,429	+		IAI47_18665	0.84	-0.4
3,982,429	+		IAI47_18665	0.84	+2.9
3,982,429	+		IAI47_18665	0.84	-0.6
3,982,429	+		IAI47_18665	0.84	+1.6
3,982,430	-		IAI47_18665	0.84	+1.8
3,982,430	-		IAI47_18665	0.84	-0.6
3,982,430	-		IAI47_18665	0.84	+0.3
3,982,430	-		IAI47_18665	0.84	-0.3
3,982,430	-		IAI47_18665	0.84	+1.3
3,982,430	-		IAI47_18665	0.84	+0.4
3,982,430	-		IAI47_18665	0.84	+2.3
3,982,430	-		IAI47_18665	0.84	-0.7
3,982,430	-		IAI47_18665	0.84	+1.5
3,982,430	-		IAI47_18665	0.84	+1.5
3,982,430	-		IAI47_18665	0.84	+0.3
3,982,430	-		IAI47_18665	0.84	-0.3
3,982,430	-		IAI47_18665	0.84	-0.5
3,982,430	-		IAI47_18665	0.84	+0.3
3,982,432	+		IAI47_18665	0.84	+0.3
3,982,432	+		IAI47_18665	0.84	-1.1
3,982,433	-		IAI47_18665	0.84	-1.6
3,982,433	-		IAI47_18665	0.84	+0.9
3,982,458	+		IAI47_18665	0.86	-0.7
3,982,458	+		IAI47_18665	0.86	+0.3
3,982,459	-		IAI47_18665	0.86	+0.3
3,982,459	-		IAI47_18665	0.86	-0.7
3,982,481	-		IAI47_18665	0.87	-0.2
3,982,580	+				+1.4
3,982,580	+				-0.7
3,982,580	+				-0.1
3,982,581	-				-0.7
3,982,581	-				+1.5
3,982,612	+				+0.2
3,982,612	+				+0.5
3,982,612	+				-1.3
3,982,637	+				+1.1
3,982,638	-				-0.3
3,982,645	+				-0.9
3,982,645	+				-1.6
3,982,659	+				+1.1
3,982,660	-				+1.7
3,982,665	+				-0.7
3,982,665	+				-0.5
3,982,665	+				+1.3
3,982,666	-				+0.3
3,982,666	-				+1.0
3,982,666	-				-0.7
3,982,689	-				+0.0
3,982,689	-				-0.7
3,982,691	+				+1.7
3,982,691	+				-0.6
3,982,693	+				-1.4
3,982,693	+				+0.0
3,982,693	+				-0.9
3,982,693	+				-0.8
3,982,693	+				+1.1
3,982,693	+				-1.1
3,982,694	-				+0.6
3,982,745	+				-1.7
3,982,745	+				-0.2
3,982,745	+				-2.3
3,982,745	+				-0.3
3,982,745	+				+0.7
3,982,745	+				+0.3
3,982,745	+				+0.1
3,982,746	-				-2.8
3,982,746	-				+0.4
3,982,780	+				+0.9
3,982,821	+				-1.7
3,982,821	+				-0.4
3,982,821	+				+3.8
3,982,821	+				+0.2
3,982,821	+				-3.3
3,982,822	-				-0.7
3,982,822	-				-0.3
3,982,823	+				-0.2
3,982,823	+				-0.7
3,982,824	-				-0.2
3,982,824	-				-1.7
3,982,824	-				+1.0
3,982,824	-				+0.7
3,982,824	-				+0.1
3,982,824	-				+0.7
3,982,824	-				+1.3
3,982,828	+				+1.6
3,982,828	+				-0.7
3,982,828	+				-1.0
3,982,828	+				+0.4
3,982,828	+				+0.0
3,982,829	-				-0.3
3,982,829	-				+0.1
3,982,829	-				+1.7
3,982,829	-				-1.5
3,982,829	-				-0.4
3,982,829	-				-2.3
3,982,829	-				+0.7
3,982,829	-				+0.3
3,982,829	-				+0.2
3,982,829	-				+1.1
3,982,831	-				-1.0
3,982,831	-				-2.0
3,982,848	+				+1.7
3,982,848	+				+0.1
3,982,849	-				-0.1
3,982,866	+				+1.0
3,982,866	+				+1.0
3,982,866	+				+1.3
3,982,867	-				-1.0
3,982,868	+				-2.7
3,982,877	+				-1.2
3,982,877	+				+0.5
3,982,877	+				+0.1
3,982,877	+				-0.7
3,982,877	+				-3.8
3,982,877	+				+2.1
3,982,878	-				+0.1
3,982,878	-				-0.7
3,982,881	-				+0.7
3,982,899	+				+0.5
3,982,914	-				+0.0
3,982,930	+				-1.3
3,982,931	-				-0.4
3,982,974	+				-0.7
3,982,974	+				-0.3
3,982,974	+				-0.3
3,982,974	+				+0.1
3,982,975	-				-0.6
3,982,975	-				-1.0
3,982,975	-				+0.3
3,982,975	-				+3.3
3,982,975	-				+1.3
3,982,975	-				-1.7
3,982,998	+				-0.4
3,982,998	+				+1.3
3,982,998	+				+0.3
3,982,998	+				-0.8
3,982,998	+				+1.3
3,983,020	+				+0.5
3,983,020	+				+0.7
3,983,021	-				-0.6
3,983,071	+		IAI47_18670	0.12	+1.0
3,983,141	+		IAI47_18670	0.28	+1.3
3,983,141	+		IAI47_18670	0.28	+1.1
3,983,141	+		IAI47_18670	0.28	+0.7
3,983,142	-		IAI47_18670	0.29	+0.7
3,983,142	-		IAI47_18670	0.29	-1.7
3,983,186	+		IAI47_18670	0.39	+1.3
3,983,187	-		IAI47_18670	0.39	+0.3
3,983,190	+		IAI47_18670	0.40	-0.9
3,983,190	+		IAI47_18670	0.40	-0.4
3,983,190	+		IAI47_18670	0.40	-0.4
3,983,190	+		IAI47_18670	0.40	-0.7
3,983,190	+		IAI47_18670	0.40	+0.3
3,983,190	+		IAI47_18670	0.40	+0.2
3,983,191	-		IAI47_18670	0.40	+0.0
3,983,191	-		IAI47_18670	0.40	-0.0
3,983,191	-		IAI47_18670	0.40	+1.8
3,983,191	-		IAI47_18670	0.40	-0.7
3,983,191	-		IAI47_18670	0.40	-1.7
3,983,191	-		IAI47_18670	0.40	+0.9
3,983,191	-		IAI47_18670	0.40	+1.5
3,983,191	-		IAI47_18670	0.40	-0.1
3,983,278	+		IAI47_18670	0.60	-0.7
3,983,279	-		IAI47_18670	0.61	+0.7
3,983,279	-		IAI47_18670	0.61	+0.1
3,983,364	+		IAI47_18670	0.80	-1.0
3,983,364	+		IAI47_18670	0.80	-2.0
3,983,364	+		IAI47_18670	0.80	-1.7
3,983,364	+		IAI47_18670	0.80	+0.9
3,983,365	-		IAI47_18670	0.81	-1.2
3,983,365	-		IAI47_18670	0.81	+1.0
3,983,365	-		IAI47_18670	0.81	-0.1
3,983,365	-		IAI47_18670	0.81	-0.0
3,983,365	-		IAI47_18670	0.81	-1.3
3,983,365	-		IAI47_18670	0.81	-0.4
3,983,365	-		IAI47_18670	0.81	-1.0
3,983,365	-		IAI47_18670	0.81	-0.7
3,983,405	+				-0.9
3,983,426	-				+0.2
3,983,439	+				+1.9
3,983,439	+				+0.0
3,983,439	+				+0.6
3,983,439	+				-0.3
3,983,440	-				+1.3
3,983,486	-				-1.5
3,983,495	+				+0.3
3,983,495	+				-1.3
3,983,496	-				-1.5
3,983,496	-				-2.5
3,983,540	+				+0.8
3,983,540	+				+0.7
3,983,540	+				-0.7
3,983,540	+				-1.7
3,983,541	-				+1.7
3,983,541	-				+0.1
3,983,541	-				-0.3
3,983,544	+				+0.7
3,983,545	-				+0.8
3,983,586	-				-1.3
3,983,586	-				-3.3
3,983,633	-		IAI47_18675	0.19	-2.0
3,983,723	-		IAI47_18675	0.39	-2.1
3,983,775	-		IAI47_18675	0.50	-1.7
3,983,822	-		IAI47_18675	0.60	-2.3
3,983,822	-		IAI47_18675	0.60	-2.0
3,983,822	-		IAI47_18675	0.60	-0.3
3,983,822	-		IAI47_18675	0.60	-2.8
3,983,860	-		IAI47_18675	0.68	-1.3
3,983,860	-		IAI47_18675	0.68	-0.1
3,983,860	-		IAI47_18675	0.68	+0.1
3,983,860	-		IAI47_18675	0.68	-1.4
3,983,860	-		IAI47_18675	0.68	-2.5
3,983,869	-		IAI47_18675	0.70	-0.3
3,983,869	-		IAI47_18675	0.70	-1.5
3,983,869	-		IAI47_18675	0.70	-3.4
3,983,869	-		IAI47_18675	0.70	-2.8
3,983,869	-		IAI47_18675	0.70	-2.0
3,983,873	-		IAI47_18675	0.71	-1.7
3,983,873	-		IAI47_18675	0.71	+0.3
3,983,873	-		IAI47_18675	0.71	-1.5
3,983,873	-		IAI47_18675	0.71	+1.3
3,983,873	-		IAI47_18675	0.71	-1.1
3,983,873	-		IAI47_18675	0.71	+0.3
3,983,873	-		IAI47_18675	0.71	-3.6
3,983,873	-		IAI47_18675	0.71	-1.9
3,983,873	-		IAI47_18675	0.71	-0.5
3,983,873	-		IAI47_18675	0.71	-2.5
3,983,902	-		IAI47_18675	0.77	-0.8
3,984,017	+				+0.5
3,984,019	+				+0.3
3,984,063	+				+0.9
3,984,064	-				-0.2
3,984,064	-				+0.7
3,984,145	+		IAI47_18680	0.13	+1.7
3,984,145	+		IAI47_18680	0.13	+0.1
3,984,146	-		IAI47_18680	0.13	+1.5
3,984,146	-		IAI47_18680	0.13	-0.7
3,984,147	+		IAI47_18680	0.13	+0.7
3,984,148	-		IAI47_18680	0.13	+0.7
3,984,160	+		IAI47_18680	0.15	-1.7
3,984,160	+		IAI47_18680	0.15	-0.2
3,984,160	+		IAI47_18680	0.15	+0.7
3,984,160	+		IAI47_18680	0.15	+1.0
3,984,160	+		IAI47_18680	0.15	-1.5
3,984,160	+		IAI47_18680	0.15	+2.8
3,984,160	+		IAI47_18680	0.15	-0.2
3,984,160	+		IAI47_18680	0.15	+0.9
3,984,160	+		IAI47_18680	0.15	+1.9
3,984,160	+		IAI47_18680	0.15	+0.3
3,984,160	+		IAI47_18680	0.15	+0.9
3,984,160	+		IAI47_18680	0.15	-1.5
3,984,160	+		IAI47_18680	0.15	-0.0
3,984,160	+		IAI47_18680	0.15	-0.1
3,984,161	-		IAI47_18680	0.15	-0.1
3,984,161	-		IAI47_18680	0.15	+0.8
3,984,161	-		IAI47_18680	0.15	+0.9
3,984,161	-		IAI47_18680	0.15	+0.3
3,984,161	-		IAI47_18680	0.15	+0.5
3,984,161	-		IAI47_18680	0.15	+0.0
3,984,161	-		IAI47_18680	0.15	+1.9
3,984,161	-		IAI47_18680	0.15	+1.7
3,984,161	-		IAI47_18680	0.15	+0.4
3,984,162	+		IAI47_18680	0.15	+1.7
3,984,162	+		IAI47_18680	0.15	-0.3
3,984,162	+		IAI47_18680	0.15	+0.3
3,984,162	+		IAI47_18680	0.15	+1.6
3,984,162	+		IAI47_18680	0.15	+0.6
3,984,162	+		IAI47_18680	0.15	-1.7
3,984,162	+		IAI47_18680	0.15	+1.3
3,984,162	+		IAI47_18680	0.15	-0.5
3,984,162	+		IAI47_18680	0.15	+0.6
3,984,162	+		IAI47_18680	0.15	-1.3
3,984,162	+		IAI47_18680	0.15	+1.3
3,984,162	+		IAI47_18680	0.15	+1.1
3,984,162	+		IAI47_18680	0.15	+0.2
3,984,163	-		IAI47_18680	0.16	+0.7
3,984,163	-		IAI47_18680	0.16	+1.3
3,984,163	-		IAI47_18680	0.16	-0.3
3,984,163	-		IAI47_18680	0.16	-0.7
3,984,163	-		IAI47_18680	0.16	+0.8
3,984,163	-		IAI47_18680	0.16	+0.3
3,984,163	-		IAI47_18680	0.16	-1.2
3,984,163	-		IAI47_18680	0.16	-2.3
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3,984,447	+		IAI47_18680	0.63	-1.4
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