Strain Fitness in Pantoea sp. MT58 around IAI47_18420

Experiment: Ying_sugar7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 3
3,918,567	-		IAI47_18410	0.25	-1.7
3,918,606	+		IAI47_18410	0.30	-1.7
3,918,607	-		IAI47_18410	0.30	-0.1
3,918,607	-		IAI47_18410	0.30	-0.5
3,918,718	-		IAI47_18410	0.43	-1.5
3,918,770	+		IAI47_18410	0.50	-2.5
3,918,771	-		IAI47_18410	0.50	-1.7
3,918,771	-		IAI47_18410	0.50	-3.3
3,918,771	-		IAI47_18410	0.50	-1.3
3,918,892	-		IAI47_18410	0.64	-1.3
3,918,892	-		IAI47_18410	0.64	-2.8
3,919,146	+				-0.7
3,919,147	-				-1.2
3,919,147	-				-1.3
3,919,147	-				-1.0
3,919,216	-				-1.3
3,919,216	-				-1.8
3,919,216	-				+0.1
3,919,226	+				+0.7
3,919,227	-				-0.9
3,919,227	-				-0.5
3,919,227	-				+0.1
3,919,227	-				+0.7
3,919,336	-		IAI47_18415	0.61	-0.5
3,919,336	-		IAI47_18415	0.61	-0.6
3,919,374	-		IAI47_18415	0.80	-0.8
3,919,401	-				-1.2
3,919,401	-				-0.4
3,919,401	-				-0.4
3,919,401	-				+0.4
3,919,401	-				+0.1
3,919,401	-				-2.0
3,919,404	-				+2.3
3,919,404	-				-0.7
3,919,404	-				-1.3
3,919,404	-				+0.0
3,919,419	+				-1.3
3,919,420	-				+0.3
3,919,420	-				-3.1
3,919,420	-				+1.6
3,919,420	-				-0.3
3,919,420	-				-2.6
3,919,420	-				+0.3
3,919,437	+				+0.7
3,919,437	+				+0.9
3,919,438	-				+0.6
3,919,438	-				+0.3
3,919,449	+				-1.7
3,919,449	+				-2.0
3,919,449	+				-0.7
3,919,449	+				-1.3
3,919,449	+				-1.4
3,919,449	+				+1.3
3,919,449	+				-0.8
3,919,449	+				+0.9
3,919,450	-				+0.1
3,919,450	-				-0.7
3,919,450	-				-1.0
3,919,450	-				+1.2
3,919,450	-				-1.7
3,919,450	-				+0.0
3,919,450	-				-0.1
3,919,450	-				-0.3
3,919,492	+				-0.7
3,919,493	-				+1.3
3,919,495	+				-1.5
3,919,496	-				-1.2
3,919,496	-				-0.9
3,919,526	-				+1.7
3,919,526	-				-1.0
3,919,575	+				+0.7
3,919,587	+				-1.4
3,919,587	+				-1.1
3,919,588	-				+1.1
3,919,588	-				+0.0
3,919,588	-				+0.2
3,919,619	-				+3.1
3,919,619	-				-1.7
3,919,619	-				-0.4
3,919,689	+				+0.3
3,919,728	+				+0.4
3,919,728	+				+0.7
3,919,728	+				-0.4
3,919,728	+				+1.9
3,919,729	-				-0.7
3,919,729	-				+0.9
3,919,729	-				+0.5
3,919,729	-				+0.3
3,919,729	-				+0.7
3,919,729	-				+0.3
3,919,729	-				-0.1
3,919,755	+				+0.1
3,919,755	+				+0.0
3,919,756	-				+0.9
3,919,756	-				+1.6
3,919,756	-				-2.0
3,919,756	-				-1.0
3,919,756	-				+1.7
3,919,810	-				+0.8
3,919,810	-				+0.0
3,919,842	+		IAI47_18420	0.11	-0.8
3,919,842	+		IAI47_18420	0.11	-0.6
3,919,842	+		IAI47_18420	0.11	+0.3
3,919,842	+		IAI47_18420	0.11	+0.6
3,919,842	+		IAI47_18420	0.11	+3.5
3,919,842	+		IAI47_18420	0.11	-0.7
3,919,843	-		IAI47_18420	0.11	+1.5
3,919,843	-		IAI47_18420	0.11	-0.1
3,919,843	-		IAI47_18420	0.11	+1.6
3,919,846	+		IAI47_18420	0.11	+1.1
3,919,846	+		IAI47_18420	0.11	+2.5
3,919,847	-		IAI47_18420	0.11	+0.7
3,919,847	-		IAI47_18420	0.11	-0.3
3,919,847	-		IAI47_18420	0.11	+0.6
3,919,847	-		IAI47_18420	0.11	-0.3
3,919,908	+		IAI47_18420	0.14	-0.3
3,919,954	+		IAI47_18420	0.15	+1.6
3,919,957	+		IAI47_18420	0.15	+0.1
3,919,957	+		IAI47_18420	0.15	-0.3
3,919,958	-		IAI47_18420	0.15	+2.1
3,919,958	-		IAI47_18420	0.15	-1.3
3,919,958	-		IAI47_18420	0.15	-0.3
3,919,958	-		IAI47_18420	0.15	+2.2
3,920,037	+		IAI47_18420	0.19	+2.3
3,920,039	-		IAI47_18420	0.19	-2.0
3,920,039	-		IAI47_18420	0.19	-0.5
3,920,039	-		IAI47_18420	0.19	+3.1
3,920,039	-		IAI47_18420	0.19	-0.2
3,920,190	+		IAI47_18420	0.25	+0.9
3,920,191	-		IAI47_18420	0.25	+2.7
3,920,191	-		IAI47_18420	0.25	+0.7
3,920,191	-		IAI47_18420	0.25	-0.3
3,920,191	-		IAI47_18420	0.25	+2.9
3,920,210	-		IAI47_18420	0.25	+2.3
3,920,296	+		IAI47_18420	0.29	-2.3
3,920,296	+		IAI47_18420	0.29	+0.7
3,920,297	-		IAI47_18420	0.29	+1.8
3,920,297	-		IAI47_18420	0.29	+0.7
3,920,297	-		IAI47_18420	0.29	+1.9
3,920,297	-		IAI47_18420	0.29	+1.2
3,920,297	-		IAI47_18420	0.29	+0.3
3,920,322	+		IAI47_18420	0.30	+1.6
3,920,371	+		IAI47_18420	0.32	+0.9
3,920,453	-		IAI47_18420	0.35	+0.7
3,920,453	-		IAI47_18420	0.35	+0.5
3,920,453	-		IAI47_18420	0.35	+0.7
3,920,485	-		IAI47_18420	0.36	+1.9
3,920,485	-		IAI47_18420	0.36	-1.3
3,920,485	-		IAI47_18420	0.36	+0.8
3,920,587	+		IAI47_18420	0.40	+1.9
3,920,587	+		IAI47_18420	0.40	+2.3
3,920,588	-		IAI47_18420	0.40	-0.7
3,920,591	-		IAI47_18420	0.40	+0.0
3,920,591	-		IAI47_18420	0.40	+1.9
3,920,624	-		IAI47_18420	0.42	+0.8
3,920,663	-		IAI47_18420	0.43	+3.0
3,920,665	-		IAI47_18420	0.43	-0.7
3,920,665	-		IAI47_18420	0.43	+0.3
3,920,698	+				-0.3
3,920,699	-		IAI47_18420	0.44	+0.3
3,920,699	-		IAI47_18420	0.44	+2.7
3,920,699	-		IAI47_18420	0.44	+0.3
3,920,715	+		IAI47_18420	0.45	+2.3
3,920,715	+		IAI47_18420	0.45	+1.8
3,920,715	+		IAI47_18420	0.45	-0.3
3,920,716	-		IAI47_18420	0.45	-1.7
3,920,716	-		IAI47_18420	0.45	+1.1
3,920,716	-		IAI47_18420	0.45	+0.7
3,920,716	-		IAI47_18420	0.45	+1.7
3,920,716	-		IAI47_18420	0.45	+0.8
3,920,716	-		IAI47_18420	0.45	-0.3
3,920,716	-		IAI47_18420	0.45	+1.6
3,920,716	-		IAI47_18420	0.45	+1.1
3,920,716	-		IAI47_18420	0.45	+1.1
3,920,721	+		IAI47_18420	0.45	-0.7
3,920,721	+		IAI47_18420	0.45	+0.9
3,920,721	+		IAI47_18420	0.45	+0.1
3,920,721	+		IAI47_18420	0.45	+0.0
3,920,721	+		IAI47_18420	0.45	-0.4
3,920,721	+		IAI47_18420	0.45	+0.8
3,920,722	-		IAI47_18420	0.45	+0.7
3,920,722	-		IAI47_18420	0.45	+0.3
3,920,722	-		IAI47_18420	0.45	+1.3
3,920,722	-		IAI47_18420	0.45	+2.3
3,920,722	-		IAI47_18420	0.45	+1.7
3,920,762	-		IAI47_18420	0.47	+1.8
3,920,762	-		IAI47_18420	0.47	+0.6
3,920,762	-		IAI47_18420	0.47	+1.1
3,920,847	+		IAI47_18420	0.50	+1.3
3,920,847	+		IAI47_18420	0.50	-0.1
3,920,848	-		IAI47_18420	0.50	-1.5
3,920,848	-		IAI47_18420	0.50	-0.3
3,920,848	-		IAI47_18420	0.50	-0.5
3,920,848	-		IAI47_18420	0.50	-0.4
3,920,848	-		IAI47_18420	0.50	-1.3
3,920,862	-		IAI47_18420	0.51	+0.9
3,920,864	+		IAI47_18420	0.51	+0.0
3,920,864	+		IAI47_18420	0.51	+0.5
3,920,865	-		IAI47_18420	0.51	+1.6
3,920,865	-		IAI47_18420	0.51	-0.1
3,920,865	-		IAI47_18420	0.51	-3.7
3,920,865	-		IAI47_18420	0.51	-1.1
3,920,865	-		IAI47_18420	0.51	+1.1
3,920,891	-		IAI47_18420	0.52	-0.7
3,920,897	+		IAI47_18420	0.52	+0.7
3,920,898	-		IAI47_18420	0.52	-1.8
3,920,898	-		IAI47_18420	0.52	-0.7
3,920,898	-		IAI47_18420	0.52	+0.3
3,920,898	-		IAI47_18420	0.52	+2.7
3,920,902	+		IAI47_18420	0.52	+1.9
3,920,903	-		IAI47_18420	0.52	+1.3
3,920,903	-		IAI47_18420	0.52	-0.9
3,920,903	-		IAI47_18420	0.52	-0.3
3,920,905	+		IAI47_18420	0.52	+1.2
3,922,117	-				-1.3
3,922,148	+				+0.1
3,922,149	-				+0.1
3,922,149	-				+0.7
3,922,177	+				+0.3
3,922,177	+				+1.3
3,922,180	+				+2.7
3,922,181	-				+0.3
3,922,181	-				+0.0
3,922,181	-				-0.7
3,922,185	+				+1.5
3,922,201	-				-1.5
3,922,201	-				+1.6
3,922,201	-				-0.5
3,922,225	-				+0.3
3,922,272	+				-0.7
3,922,283	+				+0.9
3,922,284	-				+0.9
3,922,320	+				+0.3
3,922,321	-				-1.8
3,922,321	-				-0.4
3,922,321	-				+0.3
3,922,330	+				-1.0
3,922,330	+				+1.6
3,922,330	+				+1.0
3,922,331	-				+0.5
3,922,331	-				-0.3
3,922,331	-				-0.3
3,922,384	+				+3.3
3,922,384	+				+2.7
3,922,384	+				+0.9
3,922,384	+				+0.3
3,922,384	+				-1.0
3,922,384	+				+2.7
3,922,384	+				-1.4
3,922,384	+				+1.5
3,922,385	-				+0.7
3,922,385	-				-0.3
3,922,401	+				+0.3
3,922,401	+				+0.3
3,922,401	+				-3.3
3,922,401	+				-0.7
3,922,401	+				-0.4
3,922,420	+				-0.4