Strain Fitness in Pantoea sp. MT58 around IAI47_17780

Experiment: Ying_sugar7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 3
3,774,413	+		IAI47_17770	0.13	-0.7
3,774,413	+		IAI47_17770	0.13	-0.7
3,774,414	-		IAI47_17770	0.13	-1.2
3,774,414	-		IAI47_17770	0.13	-0.7
3,774,414	-		IAI47_17770	0.13	-1.5
3,774,414	-		IAI47_17770	0.13	-1.5
3,774,476	+		IAI47_17770	0.28	-2.7
3,774,476	+		IAI47_17770	0.28	+1.1
3,774,476	+		IAI47_17770	0.28	+0.5
3,774,476	+		IAI47_17770	0.28	-0.6
3,774,476	+		IAI47_17770	0.28	-1.7
3,774,476	+		IAI47_17770	0.28	-0.7
3,774,476	+		IAI47_17770	0.28	+0.3
3,774,476	+		IAI47_17770	0.28	+0.0
3,774,476	+		IAI47_17770	0.28	-0.5
3,774,477	-		IAI47_17770	0.28	-0.1
3,774,477	-		IAI47_17770	0.28	-0.7
3,774,477	-		IAI47_17770	0.28	-1.8
3,774,477	-		IAI47_17770	0.28	+1.8
3,774,477	-		IAI47_17770	0.28	-1.0
3,774,477	-		IAI47_17770	0.28	-0.1
3,774,513	+		IAI47_17770	0.37	-2.0
3,774,513	+		IAI47_17770	0.37	-0.1
3,774,513	+		IAI47_17770	0.37	+0.1
3,774,514	-		IAI47_17770	0.37	-0.5
3,774,514	-		IAI47_17770	0.37	+0.3
3,774,514	-		IAI47_17770	0.37	-3.1
3,774,514	-		IAI47_17770	0.37	-0.1
3,774,515	+		IAI47_17770	0.37	+1.2
3,774,515	+		IAI47_17770	0.37	+0.3
3,774,515	+		IAI47_17770	0.37	+0.9
3,774,515	+		IAI47_17770	0.37	-0.5
3,774,515	+		IAI47_17770	0.37	+2.7
3,774,516	-		IAI47_17770	0.37	-1.2
3,774,516	-		IAI47_17770	0.37	-0.9
3,774,516	-		IAI47_17770	0.37	-0.2
3,774,581	+		IAI47_17770	0.53	-0.7
3,774,582	-		IAI47_17770	0.53	+0.3
3,774,594	+		IAI47_17770	0.56	-0.5
3,774,594	+		IAI47_17770	0.56	-1.7
3,774,594	+		IAI47_17770	0.56	+1.9
3,774,594	+		IAI47_17770	0.56	+0.3
3,774,595	-		IAI47_17770	0.56	+1.3
3,774,601	-		IAI47_17770	0.57	-0.7
3,774,601	-		IAI47_17770	0.57	-0.9
3,774,601	-		IAI47_17770	0.57	+0.7
3,774,601	-		IAI47_17770	0.57	+0.2
3,774,601	-		IAI47_17770	0.57	+0.5
3,774,601	-		IAI47_17770	0.57	-1.2
3,774,664	-		IAI47_17770	0.72	-0.7
3,774,720	+		IAI47_17770	0.85	-0.5
3,774,720	+		IAI47_17770	0.85	+0.4
3,774,722	+		IAI47_17770	0.86	-0.4
3,774,722	+		IAI47_17770	0.86	+0.1
3,774,723	-		IAI47_17770	0.86	-0.8
3,774,723	-		IAI47_17770	0.86	-0.5
3,774,737	+		IAI47_17770	0.89	+0.3
3,774,737	+		IAI47_17770	0.89	-0.6
3,774,738	-		IAI47_17770	0.89	+0.3
3,774,738	-		IAI47_17770	0.89	-0.0
3,774,743	+				+0.8
3,774,743	+				-3.2
3,774,911	+				+1.6
3,774,912	-				-1.7
3,774,912	-				+1.3
3,774,912	-				-0.4
3,774,952	+				+0.3
3,774,952	+				-0.1
3,774,952	+				-2.7
3,774,952	+				+0.3
3,774,953	-				-0.2
3,774,953	-				+0.1
3,774,953	-				-0.4
3,774,953	-				+1.3
3,774,953	-				+1.8
3,774,953	-				-0.0
3,774,954	+				-0.2
3,774,954	+				-0.1
3,774,954	+				+0.1
3,774,954	+				+0.3
3,774,954	+				-0.2
3,774,954	+				-0.7
3,774,954	+				+1.1
3,774,954	+				+1.0
3,774,954	+				+0.0
3,774,954	+				+1.7
3,774,954	+				+0.4
3,774,954	+				+2.1
3,774,954	+				+0.1
3,774,954	+				+0.3
3,774,954	+				+0.3
3,774,954	+				-0.7
3,774,954	+				+1.9
3,774,954	+				-0.3
3,774,954	+				-2.2
3,774,954	+				-1.1
3,774,954	+				+0.8
3,774,954	+				+1.6
3,774,955	-				+2.3
3,774,955	-				+2.1
3,774,955	-				+0.3
3,774,955	-				-0.0
3,774,955	-				-1.2
3,774,955	-				+0.2
3,774,955	-				+1.0
3,774,955	-				+0.1
3,774,955	-				+2.5
3,774,955	-				+0.6
3,774,955	-				-0.4
3,774,955	-				-0.7
3,774,955	-				+0.9
3,774,955	-				-0.2
3,774,955	-				+1.0
3,774,955	-				+0.9
3,774,955	-				-2.2
3,775,010	+				+0.1
3,775,011	-				+1.7
3,775,011	-				+0.1
3,775,020	+				+0.2
3,775,020	+				+1.0
3,775,021	-				-2.2
3,775,021	-				-1.5
3,775,021	-				-2.8
3,775,021	-				+0.3
3,775,041	+				+2.9
3,775,041	+				+1.1
3,775,041	+				+0.6
3,775,042	-				-0.1
3,775,042	-				+0.9
3,775,042	-				-0.2
3,775,042	-				-0.1
3,775,065	+		IAI47_17775	0.10	+0.3
3,775,065	+		IAI47_17775	0.10	+0.9
3,775,066	-		IAI47_17775	0.11	-0.3
3,775,066	-		IAI47_17775	0.11	-0.9
3,775,066	-		IAI47_17775	0.11	+0.9
3,775,066	-		IAI47_17775	0.11	+1.3
3,775,066	-		IAI47_17775	0.11	-0.1
3,775,092	+		IAI47_17775	0.20	-0.1
3,775,092	+		IAI47_17775	0.20	+0.9
3,775,092	+		IAI47_17775	0.20	+0.3
3,775,092	+		IAI47_17775	0.20	+0.9
3,775,092	+		IAI47_17775	0.20	-0.7
3,775,092	+		IAI47_17775	0.20	+0.7
3,775,092	+		IAI47_17775	0.20	-1.7
3,775,092	+		IAI47_17775	0.20	+1.2
3,775,092	+		IAI47_17775	0.20	+0.7
3,775,092	+		IAI47_17775	0.20	+1.3
3,775,093	-		IAI47_17775	0.20	+0.9
3,775,093	-		IAI47_17775	0.20	+0.3
3,775,093	-		IAI47_17775	0.20	-0.8
3,775,093	-		IAI47_17775	0.20	-2.0
3,775,093	-		IAI47_17775	0.20	-0.0
3,775,122	+		IAI47_17775	0.30	-1.2
3,775,122	+		IAI47_17775	0.30	+2.1
3,775,137	+		IAI47_17775	0.36	+1.3
3,775,137	+		IAI47_17775	0.36	+0.9
3,775,158	+		IAI47_17775	0.43	+0.2
3,775,158	+		IAI47_17775	0.43	+0.3
3,775,158	+		IAI47_17775	0.43	-0.9
3,775,158	+		IAI47_17775	0.43	-0.2
3,775,158	+		IAI47_17775	0.43	-2.0
3,775,158	+		IAI47_17775	0.43	-2.0
3,775,159	-		IAI47_17775	0.44	+0.2
3,775,159	-		IAI47_17775	0.44	+1.8
3,775,159	-		IAI47_17775	0.44	-0.1
3,775,159	-		IAI47_17775	0.44	-1.1
3,775,159	-		IAI47_17775	0.44	+1.1
3,775,159	-		IAI47_17775	0.44	-0.2
3,775,159	-		IAI47_17775	0.44	+1.1
3,775,159	-		IAI47_17775	0.44	+2.7
3,775,159	-		IAI47_17775	0.44	+0.2
3,775,159	-		IAI47_17775	0.44	+0.7
3,775,159	-		IAI47_17775	0.44	-2.1
3,775,159	-		IAI47_17775	0.44	+0.5
3,775,159	-		IAI47_17775	0.44	+0.8
3,775,178	+		IAI47_17775	0.50	+2.1
3,775,179	-		IAI47_17775	0.51	+2.5
3,775,219	-		IAI47_17775	0.65	+1.2
3,775,219	-		IAI47_17775	0.65	-0.1
3,775,228	-		IAI47_17775	0.68	-2.5
3,775,234	-		IAI47_17775	0.70	+0.6
3,775,242	+		IAI47_17775	0.73	-1.8
3,775,242	+		IAI47_17775	0.73	+0.1
3,775,242	+		IAI47_17775	0.73	+1.3
3,775,242	+		IAI47_17775	0.73	-0.2
3,775,242	+		IAI47_17775	0.73	+0.0
3,775,242	+		IAI47_17775	0.73	-0.0
3,775,242	+		IAI47_17775	0.73	-0.4
3,775,243	-		IAI47_17775	0.73	-0.4
3,775,243	-		IAI47_17775	0.73	-1.5
3,775,243	-		IAI47_17775	0.73	+0.2
3,775,243	-		IAI47_17775	0.73	-1.1
3,775,243	-		IAI47_17775	0.73	+0.5
3,775,243	-		IAI47_17775	0.73	+0.6
3,775,243	-		IAI47_17775	0.73	+0.5
3,775,272	+		IAI47_17775	0.84	-1.2
3,775,273	-		IAI47_17775	0.84	-0.4
3,775,273	-		IAI47_17775	0.84	+0.3
3,775,354	-				-1.7
3,775,367	+				+0.2
3,775,368	-				+0.8
3,775,369	+				+1.1
3,775,369	+				+1.6
3,775,369	+				-0.7
3,775,370	-				-0.3
3,775,370	-				-1.0
3,775,370	-				+2.5
3,775,370	-				+0.7
3,775,370	-				+1.5
3,775,385	+				+0.3
3,775,410	+				-0.4
3,775,410	+				-0.5
3,775,410	+				+2.5
3,775,410	+				+1.7
3,775,411	-				+1.8
3,775,411	-				+1.9
3,775,411	-				-0.7
3,775,413	+				-0.0
3,775,413	+				-0.7
3,775,413	+				-0.7
3,775,413	+				+0.0
3,775,413	+				+1.1
3,775,414	-				+1.2
3,775,414	-				-0.2
3,775,470	+				-1.5
3,775,470	+				+0.8
3,775,470	+				-1.6
3,775,470	+				+0.8
3,775,470	+				-2.2
3,775,471	-				+0.0
3,775,471	-				-1.3
3,775,471	-				-2.0
3,775,471	-				-2.5
3,775,471	-				-0.8
3,775,489	+		IAI47_17780	0.11	-0.8
3,775,502	-		IAI47_17780	0.12	-1.2
3,775,502	-		IAI47_17780	0.12	-1.5
3,775,502	-		IAI47_17780	0.12	+0.3
3,775,502	-		IAI47_17780	0.12	-0.5
3,775,550	+		IAI47_17780	0.17	-0.2
3,775,551	-		IAI47_17780	0.18	-1.2
3,775,551	-		IAI47_17780	0.18	-0.7
3,775,551	-		IAI47_17780	0.18	-2.7
3,775,569	+		IAI47_17780	0.19	-0.2
3,775,569	+		IAI47_17780	0.19	-0.4
3,775,569	+		IAI47_17780	0.19	+0.1
3,775,569	+		IAI47_17780	0.19	-0.1
3,775,569	+		IAI47_17780	0.19	-1.2
3,775,569	+		IAI47_17780	0.19	-1.2
3,775,570	-		IAI47_17780	0.20	+0.3
3,775,570	-		IAI47_17780	0.20	-0.7
3,775,570	-		IAI47_17780	0.20	-0.2
3,775,571	+		IAI47_17780	0.20	-2.5
3,775,571	+		IAI47_17780	0.20	-1.0
3,775,571	+		IAI47_17780	0.20	-0.9
3,775,571	+		IAI47_17780	0.20	-1.2
3,775,571	+		IAI47_17780	0.20	-1.0
3,775,571	+		IAI47_17780	0.20	-0.8
3,775,571	+		IAI47_17780	0.20	-2.7
3,775,571	+		IAI47_17780	0.20	-0.7
3,775,571	+		IAI47_17780	0.20	+1.9
3,775,572	-		IAI47_17780	0.20	-0.1
3,775,572	-		IAI47_17780	0.20	-1.0
3,775,572	-		IAI47_17780	0.20	-1.3
3,775,572	-		IAI47_17780	0.20	+0.7
3,775,572	-		IAI47_17780	0.20	+0.8
3,775,572	-		IAI47_17780	0.20	-2.1
3,775,572	-		IAI47_17780	0.20	-0.3
3,775,572	-		IAI47_17780	0.20	-0.4
3,775,585	+		IAI47_17780	0.21	-0.4
3,775,585	+		IAI47_17780	0.21	-0.4
3,775,585	+		IAI47_17780	0.21	-3.0
3,775,585	+		IAI47_17780	0.21	-1.0
3,775,585	+		IAI47_17780	0.21	-1.8
3,775,585	+		IAI47_17780	0.21	-0.5
3,775,586	-		IAI47_17780	0.21	-0.9
3,775,586	-		IAI47_17780	0.21	-2.1
3,775,586	-		IAI47_17780	0.21	-2.6
3,775,586	-		IAI47_17780	0.21	-2.7
3,775,586	-		IAI47_17780	0.21	-0.7
3,775,586	-		IAI47_17780	0.21	+0.8
3,775,586	-		IAI47_17780	0.21	-0.2
3,775,586	-		IAI47_17780	0.21	+1.3
3,775,589	+		IAI47_17780	0.22	-0.4
3,775,590	-		IAI47_17780	0.22	+1.0
3,775,615	-		IAI47_17780	0.24	-0.9
3,775,615	-		IAI47_17780	0.24	-2.5
3,775,647	+		IAI47_17780	0.28	+0.0
3,775,647	+		IAI47_17780	0.28	-2.5
3,775,647	+		IAI47_17780	0.28	+1.6
3,775,647	+		IAI47_17780	0.28	-1.9
3,775,648	-		IAI47_17780	0.28	-2.0
3,775,688	+		IAI47_17780	0.32	-2.5
3,775,688	+		IAI47_17780	0.32	-2.7
3,775,688	+		IAI47_17780	0.32	-3.2
3,775,689	-		IAI47_17780	0.32	-2.0
3,775,689	-		IAI47_17780	0.32	-0.2
3,775,713	-		IAI47_17780	0.35	-1.7
3,775,748	+		IAI47_17780	0.38	-0.7
3,775,748	+		IAI47_17780	0.38	-2.2
3,775,748	+		IAI47_17780	0.38	-1.4
3,775,748	+		IAI47_17780	0.38	+0.3
3,775,748	+		IAI47_17780	0.38	-1.2
3,775,748	+		IAI47_17780	0.38	-0.9
3,775,749	-		IAI47_17780	0.38	-0.1
3,775,749	-		IAI47_17780	0.38	-0.9
3,775,749	-		IAI47_17780	0.38	-0.7
3,775,749	-		IAI47_17780	0.38	-1.4
3,775,749	-		IAI47_17780	0.38	-1.2
3,775,749	-		IAI47_17780	0.38	+1.1
3,775,766	+		IAI47_17780	0.40	-0.5
3,775,766	+		IAI47_17780	0.40	-1.8
3,775,766	+		IAI47_17780	0.40	-2.0
3,775,766	+		IAI47_17780	0.40	-1.2
3,775,766	+		IAI47_17780	0.40	-1.7
3,775,766	+		IAI47_17780	0.40	-2.2
3,775,767	-		IAI47_17780	0.40	+1.3
3,775,767	-		IAI47_17780	0.40	+0.8
3,775,767	-		IAI47_17780	0.40	-0.8
3,775,767	-		IAI47_17780	0.40	+1.3
3,775,767	-		IAI47_17780	0.40	-0.5
3,775,797	+		IAI47_17780	0.43	-0.7
3,775,797	+		IAI47_17780	0.43	-0.2
3,775,798	-		IAI47_17780	0.44	+0.3
3,775,798	-		IAI47_17780	0.44	-1.2
3,775,798	-		IAI47_17780	0.44	-1.0
3,775,798	-		IAI47_17780	0.44	-1.0
3,775,798	-		IAI47_17780	0.44	-0.2
3,775,798	-		IAI47_17780	0.44	-0.8
3,775,808	+		IAI47_17780	0.45	-2.8
3,775,808	+		IAI47_17780	0.45	+1.1
3,775,808	+		IAI47_17780	0.45	+0.3
3,775,808	+		IAI47_17780	0.45	-2.8
3,775,809	-		IAI47_17780	0.45	+1.3
3,775,809	-		IAI47_17780	0.45	-0.5
3,775,809	-		IAI47_17780	0.45	-1.2
3,775,809	-		IAI47_17780	0.45	-1.2
3,775,841	+		IAI47_17780	0.48	-0.7
3,775,841	+		IAI47_17780	0.48	-1.2
3,775,841	+		IAI47_17780	0.48	+0.3
3,775,841	+		IAI47_17780	0.48	-1.0
3,775,841	+		IAI47_17780	0.48	-1.4
3,775,841	+		IAI47_17780	0.48	+0.3
3,775,841	+		IAI47_17780	0.48	+1.3
3,775,842	-		IAI47_17780	0.48	-1.1
3,775,842	-		IAI47_17780	0.48	-0.4
3,775,842	-		IAI47_17780	0.48	-2.1
3,775,842	-		IAI47_17780	0.48	-2.0
3,775,842	-		IAI47_17780	0.48	-1.2
3,775,842	-		IAI47_17780	0.48	-2.1
3,775,842	-		IAI47_17780	0.48	-0.8
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