Strain Fitness in Pantoea sp. MT58 around IAI47_16400

Experiment: Ying_sugar7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 3
3,472,433	+				+0.4
3,472,433	+				+0.1
3,472,433	+				+0.2
3,472,433	+				+0.7
3,472,501	+		IAI47_16390	0.56	-0.8
3,472,596	+				-0.5
3,472,597	-				+0.0
3,472,675	+				+0.4
3,472,676	-				+1.0
3,472,683	+				+2.5
3,472,684	-				-1.0
3,472,684	-				+0.4
3,472,684	-				-1.1
3,472,686	+				+0.4
3,472,687	-				+1.0
3,472,687	-				+0.1
3,472,687	-				-0.3
3,472,730	+		IAI47_16395	0.16	-0.6
3,472,731	-		IAI47_16395	0.16	+0.9
3,472,751	+		IAI47_16395	0.23	+1.6
3,472,752	-		IAI47_16395	0.24	-0.6
3,472,752	-		IAI47_16395	0.24	-0.1
3,472,752	-		IAI47_16395	0.24	-0.9
3,472,758	+		IAI47_16395	0.26	+0.4
3,472,758	+		IAI47_16395	0.26	+1.4
3,472,758	+		IAI47_16395	0.26	-0.8
3,472,758	+		IAI47_16395	0.26	-0.6
3,472,758	+		IAI47_16395	0.26	+0.4
3,472,777	+		IAI47_16395	0.32	+0.4
3,472,777	+		IAI47_16395	0.32	-0.6
3,472,777	+		IAI47_16395	0.32	+2.0
3,472,777	+		IAI47_16395	0.32	+0.3
3,472,777	+		IAI47_16395	0.32	-0.4
3,472,778	-		IAI47_16395	0.33	+2.7
3,472,778	-		IAI47_16395	0.33	-0.8
3,472,778	-		IAI47_16395	0.33	+1.2
3,472,778	-		IAI47_16395	0.33	+0.4
3,472,778	-		IAI47_16395	0.33	+1.0
3,472,781	+		IAI47_16395	0.34	-0.4
3,472,781	+		IAI47_16395	0.34	-1.2
3,472,781	+		IAI47_16395	0.34	+2.9
3,472,781	+		IAI47_16395	0.34	-0.2
3,472,781	+		IAI47_16395	0.34	+0.0
3,472,781	+		IAI47_16395	0.34	+1.0
3,472,781	+		IAI47_16395	0.34	-0.0
3,472,781	+		IAI47_16395	0.34	-0.6
3,472,781	+		IAI47_16395	0.34	+0.4
3,472,781	+		IAI47_16395	0.34	+0.1
3,472,782	-		IAI47_16395	0.34	-1.0
3,472,782	-		IAI47_16395	0.34	-0.2
3,472,782	-		IAI47_16395	0.34	+0.5
3,472,782	-		IAI47_16395	0.34	-0.0
3,472,782	-		IAI47_16395	0.34	+2.7
3,472,886	+		IAI47_16395	0.71	-0.6
3,472,886	+		IAI47_16395	0.71	-0.3
3,472,886	+		IAI47_16395	0.71	+0.9
3,472,886	+		IAI47_16395	0.71	+0.2
3,472,886	+		IAI47_16395	0.71	-2.6
3,472,886	+		IAI47_16395	0.71	-0.1
3,472,887	-		IAI47_16395	0.71	-0.6
3,472,887	-		IAI47_16395	0.71	-2.2
3,472,887	-		IAI47_16395	0.71	-0.6
3,472,887	-		IAI47_16395	0.71	+0.9
3,472,887	-		IAI47_16395	0.71	+0.5
3,472,887	-		IAI47_16395	0.71	+0.7
3,472,887	-		IAI47_16395	0.71	-2.0
3,472,887	-		IAI47_16395	0.71	-0.5
3,472,900	+		IAI47_16395	0.75	-1.6
3,472,901	-		IAI47_16395	0.76	+2.3
3,472,961	+				+1.4
3,472,962	-				+1.4
3,472,962	-				+0.4
3,472,962	-				-0.5
3,473,007	-				+0.4
3,473,082	+				-0.3
3,473,097	-				-1.2
3,473,105	+				-0.6
3,473,105	+				+0.4
3,473,106	-				-1.2
3,473,106	-				-0.2
3,473,106	-				+0.8
3,473,108	+				+1.4
3,473,108	+				-0.6
3,473,109	-				-0.2
3,473,124	-				-2.1
3,473,154	-				-2.1
3,473,173	+				+0.6
3,473,193	+				-0.1
3,473,193	+				+0.6
3,473,194	-				+0.4
3,473,194	-				-2.1
3,473,197	+				+0.4
3,473,197	+				-2.0
3,473,198	-				-2.0
3,473,198	-				-2.6
3,473,198	-				-0.6
3,473,199	+				+0.4
3,473,199	+				-0.5
3,473,200	-				-1.4
3,473,208	+				-1.0
3,473,208	+				-0.5
3,473,216	+				+1.4
3,473,216	+				-2.8
3,473,216	+				+0.4
3,473,217	-				-0.6
3,473,236	+				-1.6
3,473,236	+				-1.6
3,473,237	-				-0.7
3,473,294	+				-1.2
3,473,329	+		IAI47_16400	0.12	-1.2
3,473,370	+		IAI47_16400	0.15	-1.6
3,473,371	-		IAI47_16400	0.15	-1.2
3,473,376	+		IAI47_16400	0.16	-2.8
3,473,376	+		IAI47_16400	0.16	+0.8
3,473,377	-		IAI47_16400	0.16	+0.8
3,473,388	+		IAI47_16400	0.17	-2.6
3,473,389	-		IAI47_16400	0.17	-1.1
3,473,391	+		IAI47_16400	0.17	+0.6
3,473,464	+		IAI47_16400	0.24	-0.6
3,473,465	-		IAI47_16400	0.24	-3.1
3,473,465	-		IAI47_16400	0.24	-1.1
3,473,465	-		IAI47_16400	0.24	-1.1
3,473,465	-		IAI47_16400	0.24	-1.4
3,473,465	-		IAI47_16400	0.24	-1.9
3,473,484	+		IAI47_16400	0.26	-2.0
3,473,484	+		IAI47_16400	0.26	+0.4
3,473,484	+		IAI47_16400	0.26	-2.0
3,473,489	+		IAI47_16400	0.26	-1.9
3,473,489	+		IAI47_16400	0.26	+0.1
3,473,490	-		IAI47_16400	0.26	-1.8
3,473,509	+		IAI47_16400	0.28	-1.8
3,473,509	+		IAI47_16400	0.28	-0.1
3,473,509	+		IAI47_16400	0.28	-2.2
3,473,509	+		IAI47_16400	0.28	-1.6
3,473,513	-		IAI47_16400	0.28	-1.0
3,473,532	+		IAI47_16400	0.30	-1.6
3,473,532	+		IAI47_16400	0.30	-3.2
3,473,532	+		IAI47_16400	0.30	-0.6
3,473,532	+		IAI47_16400	0.30	-0.1
3,473,533	-		IAI47_16400	0.30	+1.4
3,473,561	+		IAI47_16400	0.33	-1.6
3,473,562	-		IAI47_16400	0.33	-1.4
3,473,607	+		IAI47_16400	0.37	-1.2
3,473,607	+		IAI47_16400	0.37	-0.5
3,473,607	+		IAI47_16400	0.37	-1.0
3,473,607	+		IAI47_16400	0.37	+1.4
3,473,607	+		IAI47_16400	0.37	-0.8
3,473,607	+		IAI47_16400	0.37	-2.9
3,473,607	+		IAI47_16400	0.37	-1.5
3,473,608	-		IAI47_16400	0.37	-0.3
3,473,608	-		IAI47_16400	0.37	-1.0
3,473,608	-		IAI47_16400	0.37	-0.8
3,473,610	+		IAI47_16400	0.37	+0.9
3,473,610	+		IAI47_16400	0.37	+0.1
3,473,610	+		IAI47_16400	0.37	-2.1
3,473,611	-		IAI47_16400	0.37	-2.2
3,473,613	+		IAI47_16400	0.38	-1.6
3,473,613	+		IAI47_16400	0.38	-0.2
3,473,613	+		IAI47_16400	0.38	-1.4
3,473,614	-		IAI47_16400	0.38	-0.2
3,473,614	-		IAI47_16400	0.38	-0.1
3,473,614	-		IAI47_16400	0.38	-3.0
3,473,614	-		IAI47_16400	0.38	-1.2
3,473,621	-		IAI47_16400	0.38	-3.3
3,473,656	+		IAI47_16400	0.41	-0.4
3,473,656	+		IAI47_16400	0.41	-2.4
3,473,656	+		IAI47_16400	0.41	-1.0
3,473,656	+		IAI47_16400	0.41	-2.2
3,473,657	-		IAI47_16400	0.42	-0.3
3,473,657	-		IAI47_16400	0.42	-0.2
3,473,657	-		IAI47_16400	0.42	-1.9
3,473,657	-		IAI47_16400	0.42	-1.0
3,473,657	-		IAI47_16400	0.42	-1.4
3,473,692	+		IAI47_16400	0.45	-1.0
3,473,692	+		IAI47_16400	0.45	+0.4
3,473,692	+		IAI47_16400	0.45	-1.8
3,473,693	-		IAI47_16400	0.45	-2.6
3,473,693	-		IAI47_16400	0.45	-2.3
3,473,716	+		IAI47_16400	0.47	+0.6
3,473,741	+		IAI47_16400	0.49	-1.0
3,473,741	+		IAI47_16400	0.49	+1.0
3,473,741	+		IAI47_16400	0.49	-0.9
3,473,741	+		IAI47_16400	0.49	-2.6
3,473,742	-		IAI47_16400	0.49	-0.8
3,473,798	+		IAI47_16400	0.54	-2.6
3,473,798	+		IAI47_16400	0.54	-0.9
3,473,798	+		IAI47_16400	0.54	-1.6
3,473,798	+		IAI47_16400	0.54	-0.0
3,473,798	+		IAI47_16400	0.54	-0.4
3,473,798	+		IAI47_16400	0.54	-1.9
3,473,798	+		IAI47_16400	0.54	-2.0
3,473,798	+		IAI47_16400	0.54	-0.9
3,473,798	+		IAI47_16400	0.54	-0.7
3,473,798	+		IAI47_16400	0.54	-2.5
3,473,799	-		IAI47_16400	0.54	-1.4
3,473,799	-		IAI47_16400	0.54	-0.6
3,473,799	-		IAI47_16400	0.54	-1.2
3,473,799	-		IAI47_16400	0.54	-1.6
3,473,799	-		IAI47_16400	0.54	+0.1
3,473,799	-		IAI47_16400	0.54	-1.2
3,473,799	-		IAI47_16400	0.54	-1.0
3,473,799	-		IAI47_16400	0.54	+1.1
3,473,800	+		IAI47_16400	0.55	-0.6
3,473,833	+		IAI47_16400	0.58	-0.8
3,473,833	+		IAI47_16400	0.58	+0.0
3,473,833	+		IAI47_16400	0.58	-1.2
3,473,833	+		IAI47_16400	0.58	-0.6
3,473,833	+		IAI47_16400	0.58	-0.3
3,473,834	-		IAI47_16400	0.58	+0.4
3,473,834	-		IAI47_16400	0.58	-0.6
3,473,834	-		IAI47_16400	0.58	-1.4
3,473,834	-		IAI47_16400	0.58	+1.4
3,473,834	-		IAI47_16400	0.58	-1.6
3,473,861	+		IAI47_16400	0.60	-1.6
3,473,861	+		IAI47_16400	0.60	-1.2
3,473,861	+		IAI47_16400	0.60	-0.6
3,473,862	-		IAI47_16400	0.60	-2.3
3,473,862	-		IAI47_16400	0.60	-0.4
3,473,862	-		IAI47_16400	0.60	-0.4
3,473,862	-		IAI47_16400	0.60	-1.4
3,473,862	-		IAI47_16400	0.60	-0.5
3,473,897	+		IAI47_16400	0.63	+0.4
3,473,897	+		IAI47_16400	0.63	-1.6
3,473,898	-		IAI47_16400	0.63	-1.4
3,473,898	-		IAI47_16400	0.63	-2.0
3,473,898	-		IAI47_16400	0.63	-2.7
3,473,905	+		IAI47_16400	0.64	-0.3
3,473,905	+		IAI47_16400	0.64	-0.8
3,473,905	+		IAI47_16400	0.64	-0.6
3,473,906	-		IAI47_16400	0.64	-2.1
3,473,909	+		IAI47_16400	0.64	-1.1
3,473,909	+		IAI47_16400	0.64	-2.7
3,473,909	+		IAI47_16400	0.64	-0.2
3,473,909	+		IAI47_16400	0.64	-1.4
3,473,909	+		IAI47_16400	0.64	-2.0
3,473,910	-		IAI47_16400	0.65	-0.8
3,473,910	-		IAI47_16400	0.65	-1.8
3,473,910	-		IAI47_16400	0.65	+1.9
3,473,910	-		IAI47_16400	0.65	+0.8
3,473,910	-		IAI47_16400	0.65	-0.5
3,473,910	-		IAI47_16400	0.65	-0.2
3,473,957	-		IAI47_16400	0.69	+0.4
3,473,997	-		IAI47_16400	0.72	-1.1
3,474,021	+		IAI47_16400	0.75	-3.0
3,474,022	-		IAI47_16400	0.75	+2.2
3,474,077	+		IAI47_16400	0.80	-1.6
3,474,077	+		IAI47_16400	0.80	-1.2
3,474,078	-		IAI47_16400	0.80	-2.0
3,474,078	-		IAI47_16400	0.80	-0.9
3,474,078	-		IAI47_16400	0.80	-1.4
3,474,078	-		IAI47_16400	0.80	-0.2
3,474,078	-		IAI47_16400	0.80	-1.6
3,474,078	-		IAI47_16400	0.80	-0.8
3,474,078	-		IAI47_16400	0.80	-1.6
3,474,097	-		IAI47_16400	0.82	-1.6
3,474,097	-		IAI47_16400	0.82	-1.5
3,474,097	-		IAI47_16400	0.82	-0.4
3,474,109	+		IAI47_16400	0.83	-1.1
3,474,110	-		IAI47_16400	0.83	-1.6
3,474,110	-		IAI47_16400	0.83	-1.5
3,474,157	+		IAI47_16400	0.87	+1.4
3,474,157	+		IAI47_16400	0.87	-1.0
3,474,158	-		IAI47_16400	0.87	-1.6
3,474,158	-		IAI47_16400	0.87	+1.9
3,474,161	+		IAI47_16400	0.87	-1.9
3,474,161	+		IAI47_16400	0.87	+0.4
3,474,161	+		IAI47_16400	0.87	-2.0
3,474,162	-		IAI47_16400	0.88	+0.6
3,474,162	-		IAI47_16400	0.88	-2.4
3,474,162	-		IAI47_16400	0.88	-1.6
3,474,162	-		IAI47_16400	0.88	-3.1
3,474,162	-		IAI47_16400	0.88	-0.4
3,474,162	-		IAI47_16400	0.88	-1.8
3,474,207	+				-0.6
3,474,207	+				-3.2
3,474,207	+				-0.4
3,474,207	+				+1.9
3,474,207	+				-2.6
3,474,207	+				-1.8
3,474,207	+				-0.6
3,474,207	+				-1.6
3,474,207	+				-0.6
3,474,207	+				-1.1
3,474,208	-				-1.9
3,474,208	-				-2.0
3,474,208	-				-0.8
3,474,208	-				-1.5
3,474,208	-				-1.6
3,474,208	-				-0.5
3,474,208	-				-2.2
3,474,208	-				-1.2
3,474,208	-				-1.4
3,474,209	+				-0.4
3,474,209	+				-1.6
3,474,209	+				-0.0
3,474,209	+				+1.1
3,474,209	+				-2.1
3,474,209	+				-0.8
3,474,209	+				-0.2
3,474,209	+				+0.4
3,474,209	+				-0.1
3,474,209	+				-1.4
3,474,209	+				-0.7
3,474,209	+				-1.6
3,474,209	+				-3.8
3,474,209	+				-0.8
3,474,210	-				-0.6
3,474,210	-				-1.8
3,474,210	-				-0.4
3,474,210	-				-2.4
3,474,210	-				-1.0
3,474,210	-				-2.1
3,474,210	-				-0.9
3,474,210	-				-0.9
3,474,210	-				+0.4
3,474,210	-				-2.5
3,474,210	-				-1.4
3,474,210	-				-1.0
3,474,210	-				-0.3
3,474,210	-				+0.6
3,474,210	-				+0.1
3,474,217	+				-0.6
3,474,235	+				-0.8
3,474,235	+				-0.8
3,474,235	+				-2.0
3,474,236	-				-2.2
3,474,236	-				-2.2
3,474,236	-				-0.2
3,474,236	-				+0.1
3,474,238	+				-0.5
3,474,238	+				+0.9
3,474,238	+				-0.9
3,474,239	-				-0.1
3,474,239	-				-2.0
3,474,239	-				-0.2
3,474,239	-				+0.4
3,474,239	-				-0.6
3,474,239	-				-0.2
3,474,282	+				-2.6
3,474,282	+				-0.0
3,474,283	-				-2.2
3,474,283	-				-0.4
3,474,283	-				-1.0
3,474,300	+				+1.2
3,474,300	+				-1.6
3,474,318	+				-1.9
3,474,318	+				+0.6
3,474,318	+				-0.4
3,474,318	+				-1.6
3,474,318	+				+1.6
3,474,319	-				+1.2
3,474,319	-				+3.2
3,474,321	+				+1.0
3,474,322	-				+0.9
3,474,322	-				+0.4
3,474,342	-				-2.0
3,474,342	-				+0.9
3,474,424	-				+0.7
3,474,470	-				+1.9
3,474,607	+		IAI47_16405	0.14	+1.4
3,474,607	+		IAI47_16405	0.14	+0.5
3,474,718	+		IAI47_16405	0.28	+0.4
3,474,719	-		IAI47_16405	0.28	-0.2
3,474,724	+		IAI47_16405	0.29	+1.4
3,474,864	+		IAI47_16405	0.47	+1.6
3,474,865	-		IAI47_16405	0.47	+0.8
3,475,006	-		IAI47_16405	0.65	-2.0
3,475,006	-		IAI47_16405	0.65	-1.6
3,475,008	+		IAI47_16405	0.65	-0.6
3,475,009	-		IAI47_16405	0.65	-0.6
3,475,024	-		IAI47_16405	0.67	+0.4
3,475,058	-		IAI47_16405	0.71	+0.6
3,475,112	+		IAI47_16405	0.78	+0.4
3,475,234	+				-0.6
3,475,285	+				-0.5
3,475,286	-				-2.4
3,475,286	-				+0.4
3,475,286	-				+1.5
3,475,295	+				-0.0
3,475,295	+				+0.4
3,475,295	+				+1.5
3,475,295	+				+1.4
3,475,295	+				-0.8
3,475,295	+				-0.8
3,475,295	+				+0.6
3,475,295	+				+0.6
3,475,295	+				+0.5
3,475,296	-				+2.4
3,475,296	-				-0.6