Strain Fitness in Pantoea sp. MT58 around IAI47_15685

Experiment: Ying_sugar7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 3
3,306,250	-				-1.3
3,306,258	+				-0.7
3,306,259	-				-0.2
3,306,259	-				+0.7
3,306,259	-				-1.0
3,306,294	+		IAI47_15680	0.12	+0.7
3,306,294	+		IAI47_15680	0.12	-0.4
3,306,486	+		IAI47_15680	0.33	+0.3
3,306,527	+		IAI47_15680	0.37	+0.3
3,306,527	+		IAI47_15680	0.37	-0.2
3,306,527	+		IAI47_15680	0.37	-0.5
3,306,527	+		IAI47_15680	0.37	-0.4
3,306,527	+		IAI47_15680	0.37	+1.1
3,306,528	-		IAI47_15680	0.37	-0.5
3,306,528	-		IAI47_15680	0.37	-1.0
3,306,528	-		IAI47_15680	0.37	-2.3
3,306,565	-		IAI47_15680	0.41	-0.7
3,306,607	-		IAI47_15680	0.46	+0.3
3,306,645	+		IAI47_15680	0.50	+1.3
3,306,646	-		IAI47_15680	0.50	+0.3
3,306,752	+		IAI47_15680	0.61	+0.3
3,306,753	-		IAI47_15680	0.62	-0.6
3,306,753	-		IAI47_15680	0.62	+0.5
3,306,798	-		IAI47_15680	0.66	+0.6
3,306,798	-		IAI47_15680	0.66	+1.1
3,306,798	-		IAI47_15680	0.66	-0.3
3,306,849	+		IAI47_15680	0.72	-0.3
3,306,850	-		IAI47_15680	0.72	-0.2
3,306,850	-		IAI47_15680	0.72	+0.6
3,306,912	-		IAI47_15680	0.79	+0.7
3,306,942	+		IAI47_15680	0.82	+1.0
3,306,942	+		IAI47_15680	0.82	+0.8
3,306,942	+		IAI47_15680	0.82	+0.3
3,306,943	-		IAI47_15680	0.82	-0.4
3,306,943	-		IAI47_15680	0.82	+0.2
3,306,943	-		IAI47_15680	0.82	+1.0
3,306,943	-		IAI47_15680	0.82	+1.3
3,306,945	+		IAI47_15680	0.82	+0.7
3,306,945	+		IAI47_15680	0.82	+1.6
3,306,946	-		IAI47_15680	0.82	-1.5
3,306,960	+		IAI47_15680	0.84	-2.5
3,306,961	-		IAI47_15680	0.84	-1.3
3,307,010	+		IAI47_15680	0.89	+0.6
3,307,010	+		IAI47_15680	0.89	-0.7
3,307,010	+		IAI47_15680	0.89	-0.0
3,307,010	+		IAI47_15680	0.89	-0.3
3,307,011	-		IAI47_15680	0.89	-0.5
3,307,011	-		IAI47_15680	0.89	-0.6
3,307,032	+				-0.2
3,307,070	+				-0.3
3,307,103	+				+0.2
3,307,103	+				-1.3
3,307,103	+				+0.2
3,307,103	+				+0.5
3,307,103	+				+1.1
3,307,104	-				-0.8
3,307,104	-				+0.2
3,307,104	-				-0.9
3,307,104	-				+0.5
3,307,159	-				+0.9
3,307,173	+				-1.1
3,307,173	+				+0.8
3,307,173	+				+0.7
3,307,173	+				+0.5
3,307,173	+				-1.5
3,307,173	+				+2.6
3,307,173	+				-1.7
3,307,174	-				-0.7
3,307,174	-				+0.4
3,307,174	-				-0.8
3,307,174	-				-1.7
3,307,174	-				+0.3
3,307,174	-				+0.3
3,307,174	-				-0.8
3,307,174	-				-0.3
3,307,175	+				+0.5
3,307,175	+				-0.1
3,307,175	+				-1.4
3,307,175	+				-0.9
3,307,175	+				+0.7
3,307,175	+				+0.0
3,307,175	+				+1.3
3,307,175	+				-1.8
3,307,175	+				-1.7
3,307,175	+				-0.5
3,307,175	+				+0.8
3,307,175	+				-2.3
3,307,176	-				+0.6
3,307,176	-				+0.7
3,307,176	-				-1.3
3,307,176	-				+0.8
3,307,176	-				-1.0
3,307,176	-				-1.3
3,307,176	-				+0.9
3,307,176	-				-0.4
3,307,176	-				+1.3
3,307,176	-				-1.3
3,307,176	-				+0.2
3,307,176	-				-0.3
3,307,176	-				+0.3
3,307,176	-				-0.7
3,307,176	-				-0.6
3,307,176	-				+0.3
3,307,176	-				+0.7
3,307,176	-				-1.1
3,307,176	-				+1.1
3,307,176	-				+0.7
3,307,176	-				-1.8
3,307,176	-				-0.0
3,307,178	+				-0.2
3,307,178	+				+0.9
3,307,178	+				+1.3
3,307,179	-				-0.4
3,307,179	-				-1.3
3,307,179	-				+1.9
3,307,179	-				-0.5
3,307,201	-				-1.1
3,307,230	+				-0.1
3,307,230	+				-0.3
3,307,230	+				+2.0
3,307,230	+				+1.6
3,307,230	+				-1.7
3,307,230	+				-0.7
3,307,230	+				-1.8
3,307,230	+				+0.4
3,307,230	+				+0.3
3,307,230	+				-1.5
3,307,231	-				-0.3
3,307,231	-				-0.4
3,307,231	-				+0.3
3,307,231	-				+0.8
3,307,231	-				-1.8
3,307,233	+				-0.3
3,307,233	+				+0.6
3,307,234	-				-1.8
3,307,234	-				+0.9
3,307,234	-				+0.6
3,307,351	-		IAI47_15685	0.20	+0.5
3,307,465	+		IAI47_15685	0.37	+0.3
3,307,465	+		IAI47_15685	0.37	+0.0
3,307,465	+		IAI47_15685	0.37	+1.4
3,307,465	+		IAI47_15685	0.37	+1.4
3,307,465	+		IAI47_15685	0.37	-1.3
3,307,466	-		IAI47_15685	0.38	-0.7
3,307,466	-		IAI47_15685	0.38	-0.4
3,307,466	-		IAI47_15685	0.38	-0.7
3,307,466	-		IAI47_15685	0.38	-1.9
3,307,466	-		IAI47_15685	0.38	-0.4
3,307,466	-		IAI47_15685	0.38	-1.8
3,307,470	+		IAI47_15685	0.38	-1.0
3,307,471	-		IAI47_15685	0.38	+0.6
3,307,562	+		IAI47_15685	0.52	-0.3
3,307,600	+		IAI47_15685	0.58	+0.5
3,307,600	+		IAI47_15685	0.58	+0.3
3,307,601	-		IAI47_15685	0.58	-1.0
3,307,608	+		IAI47_15685	0.59	+0.8
3,307,608	+		IAI47_15685	0.59	-0.0
3,307,608	+		IAI47_15685	0.59	-0.8
3,307,608	+		IAI47_15685	0.59	-0.6
3,307,608	+		IAI47_15685	0.59	-0.7
3,307,609	-		IAI47_15685	0.59	+0.1
3,307,609	-		IAI47_15685	0.59	-0.4
3,307,609	-		IAI47_15685	0.59	+0.2
3,307,609	-		IAI47_15685	0.59	-1.0
3,307,609	-		IAI47_15685	0.59	+1.5
3,307,609	-		IAI47_15685	0.59	-1.0
3,307,609	-		IAI47_15685	0.59	-0.3
3,307,671	+		IAI47_15685	0.69	-2.3
3,307,672	-		IAI47_15685	0.69	-0.3
3,307,684	+		IAI47_15685	0.71	+0.5
3,307,684	+		IAI47_15685	0.71	-0.4
3,307,684	+		IAI47_15685	0.71	-0.3
3,307,684	+		IAI47_15685	0.71	-0.2
3,307,684	+		IAI47_15685	0.71	-1.1
3,307,684	+		IAI47_15685	0.71	-0.8
3,307,684	+		IAI47_15685	0.71	-0.1
3,307,684	+		IAI47_15685	0.71	+0.0
3,307,684	+		IAI47_15685	0.71	-0.2
3,307,685	-		IAI47_15685	0.71	+1.3
3,307,685	-		IAI47_15685	0.71	+0.6
3,307,685	-		IAI47_15685	0.71	+0.2
3,307,759	+		IAI47_15685	0.82	+0.0
3,307,759	+		IAI47_15685	0.82	-0.4
3,307,759	+		IAI47_15685	0.82	-1.1
3,307,791	+		IAI47_15685	0.87	-1.4
3,307,791	+		IAI47_15685	0.87	+0.6
3,307,791	+		IAI47_15685	0.87	+0.3
3,307,791	+		IAI47_15685	0.87	+0.7
3,307,791	+		IAI47_15685	0.87	+0.2
3,307,791	+		IAI47_15685	0.87	-0.7
3,307,792	-		IAI47_15685	0.87	-0.2
3,307,792	-		IAI47_15685	0.87	+2.9
3,307,792	-		IAI47_15685	0.87	-0.9
3,307,792	-		IAI47_15685	0.87	-0.9
3,307,837	-				+1.3
3,307,837	-				+0.6
3,307,837	-				-0.7
3,307,837	-				-0.1
3,307,837	-				+0.9
3,307,848	+				+0.7
3,307,889	+				-0.1
3,307,890	-				+1.3
3,307,901	+				-0.6
3,307,901	+				-0.0
3,307,902	-				+0.8
3,307,902	-				-0.0
3,307,902	-				-0.3
3,307,902	-				+0.1
3,307,902	-				+0.3
3,307,906	+				-0.7
3,307,907	-				+1.6
3,307,907	-				-0.7
3,307,915	+				+0.6
3,307,986	+				+1.9
3,307,986	+				-0.7
3,307,987	-				+1.3
3,307,987	-				-0.7
3,307,988	+				-0.3
3,307,988	+				+0.1
3,307,989	-				-1.7
3,308,004	-				+1.1
3,308,015	+		IAI47_15690	0.11	-1.3
3,308,016	-		IAI47_15690	0.11	+0.9
3,308,016	-		IAI47_15690	0.11	-1.3
3,308,066	+		IAI47_15690	0.20	-0.4
3,308,067	-		IAI47_15690	0.20	+2.5
3,308,067	-		IAI47_15690	0.20	+0.7
3,308,067	-		IAI47_15690	0.20	-0.9
3,308,067	-		IAI47_15690	0.20	-0.7
3,308,067	-		IAI47_15690	0.20	+1.1
3,308,077	+		IAI47_15690	0.22	+0.3
3,308,078	-		IAI47_15690	0.23	+0.6
3,308,078	-		IAI47_15690	0.23	-0.4
3,308,078	-		IAI47_15690	0.23	-1.4
3,308,078	-		IAI47_15690	0.23	+0.6
3,308,116	-		IAI47_15690	0.30	-0.3
3,308,116	-		IAI47_15690	0.30	+0.6
3,308,162	-		IAI47_15690	0.38	+1.7
3,308,162	-		IAI47_15690	0.38	-0.1
3,308,193	+		IAI47_15690	0.44	+0.9
3,308,194	-		IAI47_15690	0.44	+0.6
3,308,194	-		IAI47_15690	0.44	+1.3
3,308,194	-		IAI47_15690	0.44	-0.2
3,308,285	+		IAI47_15690	0.61	+0.6
3,308,301	+		IAI47_15690	0.64	-2.3
3,308,377	+		IAI47_15690	0.78	+1.3
3,308,388	+		IAI47_15690	0.80	-0.1
3,308,389	-		IAI47_15690	0.80	+0.3
3,308,389	-		IAI47_15690	0.80	+1.3
3,308,474	-				-0.7
3,308,509	+				+0.3
3,308,593	+				+0.1
3,308,593	+				-1.5
3,308,598	+				-2.0
3,308,599	-				+0.3
3,308,629	+				-0.2
3,308,630	-				-0.8
3,308,630	-				-0.4
3,308,630	-				-0.3
3,308,634	+				+0.5
3,308,634	+				-0.1
3,308,634	+				-1.3
3,308,635	-				+0.9
3,308,635	-				+1.1
3,308,635	-				-2.3
3,308,635	-				-0.1
3,308,635	-				+1.4
3,308,651	+				+1.1
3,308,652	-				-1.5
3,308,674	+				-0.1
3,308,674	+				-0.7
3,308,696	+				+1.9
3,308,696	+				+3.1
3,308,701	+				-0.7
3,308,701	+				+0.0
3,308,701	+				+1.1
3,308,702	-				+0.5
3,308,702	-				+0.5
3,308,702	-				+1.0
3,308,737	+				-0.1
3,308,737	+				-0.0
3,308,737	+				-0.8
3,308,738	-				+0.7
3,308,738	-				+1.2
3,308,758	-				-1.4
3,308,800	+				+1.3
3,308,800	+				-1.5
3,308,800	+				-2.0
3,308,800	+				+0.8
3,308,800	+				-0.7
3,308,800	+				-0.7
3,308,800	+				-1.4
3,308,800	+				+0.9
3,308,800	+				+1.8
3,308,800	+				-1.3
3,308,800	+				-1.3
3,308,800	+				+1.3
3,308,801	-				-0.5
3,308,801	-				-0.8
3,308,801	-				+0.1
3,308,801	-				-0.1
3,308,801	-				+0.9
3,308,801	-				-0.4
3,308,801	-				-1.9
3,308,806	+				+1.6
3,308,806	+				+0.1
3,308,806	+				-2.3
3,308,806	+				-1.7
3,308,806	+				-0.2
3,308,806	+				+1.8
3,308,807	-				+1.1
3,308,807	-				+2.3
3,308,807	-				-1.0