Strain Fitness in Pantoea sp. MT58 around IAI47_12965

Experiment: Ying_sugar7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 3
2,742,356	-		IAI47_12960	0.50	+1.3
2,742,390	+		IAI47_12960	0.52	+1.4
2,742,548	+		IAI47_12960	0.61	+0.6
2,742,733	+		IAI47_12960	0.73	-0.4
2,742,798	+		IAI47_12960	0.76	+1.0
2,742,863	+		IAI47_12960	0.80	+1.2
2,742,863	+		IAI47_12960	0.80	+2.2
2,742,864	-		IAI47_12960	0.81	+1.1
2,742,864	-		IAI47_12960	0.81	-0.8
2,742,864	-		IAI47_12960	0.81	-0.1
2,742,866	+		IAI47_12960	0.81	-0.3
2,742,867	-		IAI47_12960	0.81	+1.3
2,742,867	-		IAI47_12960	0.81	-0.9
2,742,867	-		IAI47_12960	0.81	-0.7
2,742,963	+		IAI47_12960	0.87	+0.9
2,742,963	+		IAI47_12960	0.87	+1.1
2,742,963	+		IAI47_12960	0.87	+0.3
2,742,996	+		IAI47_12960	0.89	+0.0
2,743,017	+		IAI47_12960	0.90	+0.7
2,743,018	-		IAI47_12960	0.90	+0.5
2,743,018	-		IAI47_12960	0.90	+0.7
2,743,026	-				+0.3
2,743,026	-				+0.4
2,743,080	+				-0.9
2,743,080	+				+0.3
2,743,120	+				+0.3
2,743,120	+				+2.3
2,743,120	+				+0.8
2,743,137	+				+0.9
2,743,137	+				-0.4
2,743,137	+				-0.7
2,743,137	+				-1.5
2,743,138	-				+0.3
2,743,138	-				-1.1
2,743,138	-				+0.1
2,743,138	-				+1.9
2,743,167	+				-2.3
2,743,167	+				-0.2
2,743,167	+				-0.1
2,743,167	+				+1.3
2,743,167	+				-1.0
2,743,168	-				+0.3
2,743,168	-				-0.1
2,743,168	-				+0.6
2,743,182	+				-0.7
2,743,182	+				+0.3
2,743,201	+				+0.3
2,743,202	-				-0.3
2,743,203	+				-0.3
2,743,204	-				-1.4
2,743,204	-				+2.5
2,743,244	+				-0.2
2,743,245	-				+0.5
2,743,245	-				-0.7
2,743,245	-				+2.3
2,743,255	-				-0.1
2,743,255	-				-0.9
2,743,310	+				-0.0
2,743,310	+				-1.1
2,743,310	+				+1.3
2,743,310	+				-0.0
2,743,310	+				+0.0
2,743,310	+				+0.3
2,743,310	+				-1.4
2,743,310	+				-1.9
2,743,310	+				-0.7
2,743,310	+				-1.9
2,743,310	+				-2.5
2,743,310	+				+1.0
2,743,310	+				+0.1
2,743,310	+				-0.4
2,743,310	+				+1.5
2,743,310	+				+0.3
2,743,311	-				-2.2
2,743,311	-				+0.7
2,743,311	-				+0.5
2,743,311	-				-1.0
2,743,311	-				-1.3
2,743,311	-				+0.4
2,743,311	-				-2.5
2,743,311	-				+0.2
2,743,311	-				+0.3
2,743,311	-				-3.1
2,743,311	-				+0.9
2,743,311	-				-0.5
2,743,311	-				+0.5
2,743,311	-				-0.1
2,743,311	-				-2.0
2,743,311	-				-0.7
2,743,311	-				-0.1
2,743,311	-				+0.5
2,743,314	+				+1.0
2,743,314	+				+0.3
2,743,314	+				-0.3
2,743,314	+				+0.1
2,743,314	+				-1.5
2,743,314	+				+2.3
2,743,314	+				-0.4
2,743,315	-				-0.9
2,743,315	-				+0.5
2,743,315	-				-1.9
2,743,315	-				+0.3
2,743,315	-				+0.1
2,743,331	+				-0.2
2,743,332	-				+1.3
2,743,347	-				-0.3
2,743,364	-				-0.7
2,743,373	+				+0.8
2,743,373	+				+0.3
2,743,396	+				+2.1
2,743,397	-				+1.0
2,743,397	-				+0.3
2,743,423	-		IAI47_12965	0.12	-1.3
2,743,439	+		IAI47_12965	0.14	-2.3
2,743,500	-		IAI47_12965	0.21	-1.2
2,743,540	+		IAI47_12965	0.25	+0.8
2,743,566	+		IAI47_12965	0.28	+1.1
2,743,566	+		IAI47_12965	0.28	+0.8
2,743,566	+		IAI47_12965	0.28	+0.6
2,743,566	+		IAI47_12965	0.28	-0.4
2,743,566	+		IAI47_12965	0.28	-0.1
2,743,566	+		IAI47_12965	0.28	+0.1
2,743,566	+		IAI47_12965	0.28	-1.4
2,743,567	-		IAI47_12965	0.28	-0.2
2,743,567	-		IAI47_12965	0.28	-1.9
2,743,567	-		IAI47_12965	0.28	+1.9
2,743,567	-		IAI47_12965	0.28	+2.8
2,743,567	-		IAI47_12965	0.28	+0.7
2,743,567	-		IAI47_12965	0.28	+0.9
2,743,619	+		IAI47_12965	0.34	+1.0
2,743,619	+		IAI47_12965	0.34	-0.2
2,743,620	-		IAI47_12965	0.34	-1.0
2,743,642	+		IAI47_12965	0.37	+0.5
2,743,642	+		IAI47_12965	0.37	+0.0
2,743,642	+		IAI47_12965	0.37	-0.7
2,743,642	+		IAI47_12965	0.37	+0.8
2,743,643	-		IAI47_12965	0.37	+0.3
2,743,643	-		IAI47_12965	0.37	+1.5
2,743,643	-		IAI47_12965	0.37	+1.6
2,743,643	-		IAI47_12965	0.37	-2.3
2,743,643	-		IAI47_12965	0.37	-0.5
2,743,643	-		IAI47_12965	0.37	+0.9
2,743,672	+		IAI47_12965	0.40	+0.3
2,743,672	+		IAI47_12965	0.40	-1.3
2,743,672	+		IAI47_12965	0.40	-2.2
2,743,672	+		IAI47_12965	0.40	-1.2
2,743,722	+		IAI47_12965	0.46	-0.1
2,743,722	+		IAI47_12965	0.46	-1.0
2,743,722	+		IAI47_12965	0.46	+0.9
2,743,722	+		IAI47_12965	0.46	-0.9
2,743,722	+		IAI47_12965	0.46	-1.5
2,743,722	+		IAI47_12965	0.46	-0.1
2,743,722	+		IAI47_12965	0.46	-1.5
2,743,723	-		IAI47_12965	0.46	-1.3
2,743,723	-		IAI47_12965	0.46	+0.8
2,743,794	-		IAI47_12965	0.54	+1.3
2,743,794	-		IAI47_12965	0.54	-1.5
2,743,794	-		IAI47_12965	0.54	+0.7
2,743,870	+		IAI47_12965	0.62	+0.3
2,743,871	-		IAI47_12965	0.62	+0.8
2,743,871	-		IAI47_12965	0.62	+0.7
2,743,926	+		IAI47_12965	0.68	-0.2
2,743,926	+		IAI47_12965	0.68	+1.2
2,743,927	-		IAI47_12965	0.68	+0.6
2,743,927	-		IAI47_12965	0.68	-0.5
2,743,942	+		IAI47_12965	0.70	+1.3
2,743,942	+		IAI47_12965	0.70	+4.0
2,743,942	+		IAI47_12965	0.70	-0.2
2,743,942	+		IAI47_12965	0.70	-0.0
2,743,943	-		IAI47_12965	0.70	+1.8
2,744,096	+		IAI47_12965	0.87	+0.3
2,744,097	-		IAI47_12965	0.87	-0.1
2,744,107	+		IAI47_12965	0.88	+1.1
2,744,147	+				+1.0
2,744,278	+				-0.4
2,744,279	-				+0.3
2,744,279	-				-0.7
2,744,279	-				+1.5
2,744,393	+				-1.7
2,744,394	-				+0.1
2,744,463	+				+0.3
2,744,463	+				+0.7
2,744,464	-				-0.0
2,744,464	-				-0.4
2,744,464	-				-1.3
2,744,576	+		IAI47_12970	0.14	+0.3
2,744,576	+		IAI47_12970	0.14	-0.7
2,744,576	+		IAI47_12970	0.14	-0.7
2,744,576	+		IAI47_12970	0.14	+0.9
2,744,577	-		IAI47_12970	0.14	-0.2
2,744,577	-		IAI47_12970	0.14	-0.5
2,744,577	-		IAI47_12970	0.14	-0.2
2,744,577	-		IAI47_12970	0.14	+0.7
2,744,577	-		IAI47_12970	0.14	-1.3
2,744,577	-		IAI47_12970	0.14	+0.3
2,744,577	-		IAI47_12970	0.14	+0.1
2,744,577	-		IAI47_12970	0.14	+0.9
2,744,577	-		IAI47_12970	0.14	-0.6
2,744,611	-		IAI47_12970	0.16	+1.3
2,744,611	-		IAI47_12970	0.16	+0.5
2,744,719	+		IAI47_12970	0.22	+0.0
2,744,719	+		IAI47_12970	0.22	-1.0
2,744,751	-		IAI47_12970	0.24	-2.0
2,744,810	+		IAI47_12970	0.27	+0.8
2,744,811	-		IAI47_12970	0.27	+1.0
2,744,811	-		IAI47_12970	0.27	+0.8
2,744,811	-		IAI47_12970	0.27	+0.7
2,744,826	+		IAI47_12970	0.28	+1.5
2,744,826	+		IAI47_12970	0.28	+0.3
2,745,018	+		IAI47_12970	0.39	+0.1
2,745,019	-		IAI47_12970	0.39	-0.0
2,745,064	+		IAI47_12970	0.42	-1.3
2,745,064	+		IAI47_12970	0.42	+1.3
2,745,064	+		IAI47_12970	0.42	+0.9
2,745,064	+		IAI47_12970	0.42	+0.1
2,745,065	-		IAI47_12970	0.42	-1.3
2,745,065	-		IAI47_12970	0.42	+0.3
2,745,076	+		IAI47_12970	0.43	+0.5
2,745,076	+		IAI47_12970	0.43	-2.3
2,745,077	-		IAI47_12970	0.43	-0.3
2,745,077	-		IAI47_12970	0.43	+0.1
2,745,077	-		IAI47_12970	0.43	+1.3
2,745,149	+		IAI47_12970	0.47	-0.5
2,745,149	+		IAI47_12970	0.47	-0.1
2,745,149	+		IAI47_12970	0.47	-0.7
2,745,150	-		IAI47_12970	0.47	+0.5
2,745,150	-		IAI47_12970	0.47	+1.0
2,745,150	-		IAI47_12970	0.47	-0.5
2,745,184	+		IAI47_12970	0.49	+1.6
2,745,185	-		IAI47_12970	0.49	-2.0
2,745,185	-		IAI47_12970	0.49	+0.6