Strain Fitness in Pantoea sp. MT58 around IAI47_12935

Experiment: Ying_sugar7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 3
2,736,065	+		IAI47_12930	0.52	+1.6
2,736,233	+		IAI47_12930	0.62	-0.1
2,736,234	-		IAI47_12930	0.62	+0.0
2,736,453	-		IAI47_12930	0.75	+0.6
2,736,458	-		IAI47_12930	0.75	+1.9
2,736,458	-		IAI47_12930	0.75	+0.7
2,736,625	+		IAI47_12930	0.85	+0.6
2,736,662	+		IAI47_12930	0.87	+2.0
2,736,797	+				+0.7
2,736,836	-				-0.5
2,736,836	-				-2.3
2,736,885	+				+1.0
2,736,885	+				+2.0
2,736,885	+				+1.0
2,736,885	+				-0.7
2,736,885	+				-1.0
2,736,885	+				+0.1
2,736,885	+				-0.4
2,736,885	+				+1.1
2,736,885	+				+1.6
2,736,885	+				-0.7
2,736,885	+				-1.6
2,736,886	-				-1.6
2,736,886	-				-0.7
2,736,886	-				-0.4
2,736,886	-				-0.7
2,736,886	-				-1.7
2,736,886	-				-1.5
2,736,932	-				-1.3
2,736,932	-				-1.0
2,736,997	+		IAI47_12935	0.11	-1.7
2,736,998	-		IAI47_12935	0.11	-1.8
2,737,005	-				-1.3
2,737,036	+		IAI47_12935	0.17	-1.4
2,737,037	-		IAI47_12935	0.17	+0.3
2,737,044	+		IAI47_12935	0.18	-2.5
2,737,148	+		IAI47_12935	0.33	+0.2
2,737,148	+		IAI47_12935	0.33	+0.3
2,737,149	-		IAI47_12935	0.33	-1.3
2,737,149	-		IAI47_12935	0.33	-1.3
2,737,256	+		IAI47_12935	0.48	-0.1
2,737,257	-		IAI47_12935	0.48	-1.7
2,737,257	-		IAI47_12935	0.48	-1.0
2,737,290	+		IAI47_12935	0.53	-1.1
2,737,291	-		IAI47_12935	0.53	+0.0
2,737,291	-		IAI47_12935	0.53	+0.3
2,737,291	-		IAI47_12935	0.53	-3.2
2,737,291	-		IAI47_12935	0.53	-1.7
2,737,353	+		IAI47_12935	0.62	-2.4
2,737,353	+		IAI47_12935	0.62	-1.7
2,737,353	+		IAI47_12935	0.62	-0.7
2,737,353	+		IAI47_12935	0.62	-2.4
2,737,354	-		IAI47_12935	0.62	-3.0
2,737,354	-		IAI47_12935	0.62	-2.3
2,737,354	-		IAI47_12935	0.62	-1.9
2,737,490	+		IAI47_12935	0.82	-1.3
2,737,490	+		IAI47_12935	0.82	+0.3
2,737,491	-		IAI47_12935	0.82	-1.9
2,737,510	+		IAI47_12935	0.85	-1.8
2,737,539	+		IAI47_12935	0.89	-1.7
2,737,548	+				-0.9
2,737,548	+				-0.4
2,737,549	-				-1.3
2,737,549	-				-1.9
2,737,549	-				-3.0
2,737,549	-				+1.5
2,737,552	+				-1.0
2,737,552	+				-2.5
2,737,552	+				+0.9
2,737,552	+				-2.9
2,737,552	+				-1.3
2,737,553	-				-0.7
2,737,553	-				-2.8
2,737,553	-				-1.4
2,737,553	-				-2.3
2,737,553	-				-0.0
2,737,617	+				-0.3
2,737,638	+				-0.3
2,737,648	+				-1.7
2,737,648	+				+0.3
2,737,656	-				-1.8
2,737,656	-				-0.2
2,737,660	+				-2.5
2,737,674	-				-0.7
2,737,694	+				-1.9
2,737,773	+				-0.4
2,737,773	+				-1.3
2,737,783	+				+0.8
2,737,784	-				-1.3
2,737,792	-				-0.3
2,737,813	+				+1.1
2,737,813	+				-2.7
2,737,813	+				+1.0
2,737,813	+				-0.7
2,737,813	+				-0.6
2,737,814	-				-0.3
2,737,814	-				-0.7
2,737,814	-				-1.1
2,737,822	+				-1.5
2,737,841	+				-1.0
2,737,841	+				-0.1
2,737,841	+				-0.2
2,737,841	+				+0.9
2,737,842	-				+2.3
2,737,842	-				+1.1
2,738,185	+				-1.1
2,738,185	+				+0.7
2,738,214	+				+1.3
2,738,229	+				-0.4
2,738,229	+				-1.3
2,738,268	+				+3.6
2,738,269	-				+1.0
2,738,269	-				+0.5
2,738,317	-				-1.3
2,738,317	-				-2.6
2,738,317	-				-1.1
2,738,354	+				-2.8
2,738,355	-				-2.8
2,738,463	+				+2.3
2,738,464	-				-1.3
2,738,464	-				-1.3
2,738,464	-				-1.5
2,738,552	-		IAI47_12945	0.13	-1.3