Strain Fitness in Pantoea sp. MT58 around IAI47_12865

Experiment: Ying_sugar7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 3
2,714,854	-				-0.9
2,714,894	-				-0.7
2,714,894	-				-1.7
2,714,894	-				-2.9
2,714,894	-				-2.0
2,714,894	-				-3.5
2,714,903	-				-0.7
2,714,903	-				-1.4
2,714,908	-				+0.3
2,714,908	-				-1.7
2,714,908	-				-0.7
2,714,911	-				+0.6
2,714,985	-				-2.7
2,714,985	-				-3.3
2,714,987	-				-3.2
2,714,987	-				-2.3
2,714,987	-				-3.3
2,714,987	-				-0.7
2,714,987	-				-3.3
2,714,987	-				-2.5
2,714,987	-				-4.2
2,714,987	-				-1.7
2,714,987	-				-1.7
2,714,987	-				-2.0
2,714,991	-				-2.3
2,714,991	-				-0.7
2,714,991	-				-2.5
2,714,991	-				-4.1
2,714,991	-				-4.0
2,714,991	-				-0.7
2,715,003	-				-0.7
2,715,010	-				-3.0
2,715,010	-				-1.7
2,715,010	-				-2.0
2,715,012	+				-0.7
2,715,013	-				-0.7
2,715,013	-				-3.2
2,715,013	-				-2.9
2,715,013	-				+0.3
2,715,013	-				-2.0
2,715,013	-				-1.3
2,715,013	-				+0.3
2,715,026	+		IAI47_12865	0.10	-2.3
2,715,026	+		IAI47_12865	0.10	-2.3
2,715,026	+		IAI47_12865	0.10	-0.7
2,715,047	+		IAI47_12865	0.12	-1.7
2,715,047	+		IAI47_12865	0.12	-0.7
2,715,047	+		IAI47_12865	0.12	-1.7
2,715,048	-		IAI47_12865	0.12	-2.0
2,715,048	-		IAI47_12865	0.12	-1.7
2,715,048	-		IAI47_12865	0.12	-2.5
2,715,140	+		IAI47_12865	0.21	-4.0
2,715,141	-		IAI47_12865	0.21	-3.2
2,715,146	-		IAI47_12865	0.21	+0.3
2,715,173	-		IAI47_12865	0.24	-2.3
2,715,198	-		IAI47_12865	0.26	-4.0
2,715,198	-		IAI47_12865	0.26	-2.3
2,715,198	-		IAI47_12865	0.26	-2.0
2,715,201	-		IAI47_12865	0.27	-2.5
2,715,242	+		IAI47_12865	0.30	-2.7
2,715,242	+		IAI47_12865	0.30	-1.3
2,715,242	+		IAI47_12865	0.30	-3.7
2,715,243	-		IAI47_12865	0.30	-2.3
2,715,243	-		IAI47_12865	0.30	-3.3
2,715,243	-		IAI47_12865	0.30	-2.5
2,715,262	+		IAI47_12865	0.32	-3.2
2,715,262	+		IAI47_12865	0.32	-2.3
2,715,262	+		IAI47_12865	0.32	-2.9
2,715,262	+		IAI47_12865	0.32	-2.9
2,715,263	-		IAI47_12865	0.32	-1.7
2,715,263	-		IAI47_12865	0.32	+0.3
2,715,263	-		IAI47_12865	0.32	-2.5
2,715,263	-		IAI47_12865	0.32	-2.5
2,715,263	-		IAI47_12865	0.32	-2.9
2,715,263	-		IAI47_12865	0.32	-2.0
2,715,287	+		IAI47_12865	0.34	-4.1
2,715,287	+		IAI47_12865	0.34	-3.8
2,715,287	+		IAI47_12865	0.34	-0.7
2,715,287	+		IAI47_12865	0.34	-2.0
2,715,288	-		IAI47_12865	0.35	-3.7
2,715,288	-		IAI47_12865	0.35	-1.7
2,715,312	+		IAI47_12865	0.37	-2.3
2,715,312	+		IAI47_12865	0.37	-1.3
2,715,320	-		IAI47_12865	0.37	-3.6
2,715,320	-		IAI47_12865	0.37	-3.4
2,715,320	-		IAI47_12865	0.37	-2.0
2,715,402	+		IAI47_12865	0.45	-0.7
2,715,403	-		IAI47_12865	0.45	-2.0
2,715,424	+		IAI47_12865	0.47	-3.0
2,715,425	-		IAI47_12865	0.47	-3.8
2,715,425	-		IAI47_12865	0.47	-2.7
2,715,437	-		IAI47_12865	0.48	-4.2
2,715,470	+		IAI47_12865	0.51	-3.0
2,715,470	+		IAI47_12865	0.51	-2.7
2,715,471	-		IAI47_12865	0.51	-3.6
2,715,498	-		IAI47_12865	0.54	-3.2
2,715,565	+		IAI47_12865	0.60	-0.7
2,715,566	-		IAI47_12865	0.60	-1.7
2,715,583	-		IAI47_12865	0.62	-2.5
2,715,583	-		IAI47_12865	0.62	+0.3
2,715,661	+		IAI47_12865	0.69	-1.7
2,715,661	+		IAI47_12865	0.69	-2.3
2,715,661	+		IAI47_12865	0.69	-2.3
2,715,662	-		IAI47_12865	0.69	-2.3
2,715,662	-		IAI47_12865	0.69	-3.2
2,715,662	-		IAI47_12865	0.69	-4.0
2,715,678	+		IAI47_12865	0.70	-1.7
2,715,678	+		IAI47_12865	0.70	-3.2
2,715,712	+		IAI47_12865	0.74	-2.7
2,715,712	+		IAI47_12865	0.74	-1.3
2,715,712	+		IAI47_12865	0.74	-2.3
2,715,712	+		IAI47_12865	0.74	-0.7
2,715,712	+		IAI47_12865	0.74	-2.5
2,715,712	+		IAI47_12865	0.74	-2.3
2,715,713	-		IAI47_12865	0.74	-1.3
2,715,713	-		IAI47_12865	0.74	-2.7
2,715,713	-		IAI47_12865	0.74	-2.7
2,715,713	-		IAI47_12865	0.74	-2.9
2,715,713	-		IAI47_12865	0.74	-2.7
2,715,713	-		IAI47_12865	0.74	-3.4
2,715,800	-		IAI47_12865	0.82	-2.3
2,715,853	-		IAI47_12865	0.87	-3.4
2,715,860	+		IAI47_12865	0.87	-0.7
2,715,869	+		IAI47_12865	0.88	-2.7
2,715,891	+				-2.3
2,715,891	+				-0.7
2,715,892	-				-2.3
2,715,892	-				-1.3
2,715,899	+				-3.6
2,715,957	+				-1.3
2,715,957	+				+0.3
2,715,977	+				-2.0
2,715,984	-				-1.7
2,716,017	+				-1.7
2,716,017	+				-3.0
2,716,017	+				-2.0
2,716,049	-				-3.4
2,716,049	-				-4.6
2,716,049	-				-2.9
2,716,058	+				-3.3
2,716,058	+				-2.0
2,716,058	+				-3.4
2,716,059	-				-1.4
2,716,059	-				-2.5
2,716,064	+				-3.3
2,716,064	+				-3.0
2,716,064	+				-2.0
2,716,064	+				+0.3
2,716,064	+				-3.2
2,716,065	-				-0.4
2,716,065	-				-0.4
2,716,065	-				+1.3
2,716,076	+				-2.5
2,716,076	+				-2.3
2,716,077	-				+0.3
2,716,077	-				-0.2
2,716,077	-				-2.2
2,716,105	+				-2.0
2,716,106	-				-0.8
2,716,122	+				+2.4
2,716,122	+				-0.3
2,716,122	+				-0.6
2,716,122	+				+0.9
2,716,122	+				+0.9
2,716,122	+				+2.3
2,716,123	-				-0.8
2,716,123	-				-0.4
2,716,123	-				-0.9
2,716,127	+				-1.4
2,716,127	+				-0.0
2,716,127	+				-0.4
2,716,128	-				+0.9
2,716,128	-				-0.6
2,716,128	-				+1.7
2,716,128	-				+2.4
2,716,128	-				+0.3
2,716,128	-				+2.5
2,716,176	+				+0.5
2,716,176	+				-1.3
2,716,177	-				+0.9
2,716,177	-				+0.3
2,716,215	-				-0.6
2,716,215	-				+1.2
2,716,251	+				-0.3
2,716,311	+				+0.8
2,716,311	+				+1.1
2,716,311	+				-0.2
2,716,311	+				+0.8
2,716,312	-				+0.7
2,716,312	-				+0.1
2,716,312	-				+0.6
2,716,327	-				-0.4
2,716,398	+				+0.1
2,716,399	-				-0.7
2,716,399	-				-1.0
2,716,399	-				-1.7
2,716,452	+				+1.2
2,716,453	-				+1.1
2,716,482	+				-0.1
2,716,483	-				-0.2
2,716,557	+		IAI47_12870	0.14	-0.5
2,716,557	+		IAI47_12870	0.14	-0.4
2,716,557	+		IAI47_12870	0.14	+0.4
2,716,558	-		IAI47_12870	0.14	+0.3
2,716,558	-		IAI47_12870	0.14	+0.5
2,716,558	-		IAI47_12870	0.14	-0.1
2,716,558	-		IAI47_12870	0.14	+0.0
2,716,558	-		IAI47_12870	0.14	+0.6
2,716,562	-		IAI47_12870	0.14	+0.2
2,716,618	+		IAI47_12870	0.17	-1.5
2,716,644	-		IAI47_12870	0.19	+0.1
2,716,661	+		IAI47_12870	0.20	+0.1
2,716,662	-		IAI47_12870	0.20	+1.3
2,716,700	-		IAI47_12870	0.22	+0.7
2,716,813	+		IAI47_12870	0.28	-0.1
2,716,813	+		IAI47_12870	0.28	-0.7
2,716,814	-		IAI47_12870	0.28	-0.9
2,716,814	-		IAI47_12870	0.28	+1.8
2,716,827	+		IAI47_12870	0.29	-0.1
2,716,827	+		IAI47_12870	0.29	-0.6
2,716,827	+		IAI47_12870	0.29	-0.4
2,716,827	+		IAI47_12870	0.29	+0.3
2,716,827	+		IAI47_12870	0.29	-0.1
2,716,828	-		IAI47_12870	0.29	-1.1
2,716,828	-		IAI47_12870	0.29	+1.1
2,716,828	-		IAI47_12870	0.29	-0.0
2,716,828	-		IAI47_12870	0.29	+0.7
2,716,843	+		IAI47_12870	0.30	-0.5
2,716,843	+		IAI47_12870	0.30	-1.1
2,716,843	+		IAI47_12870	0.30	-1.5
2,716,843	+		IAI47_12870	0.30	+0.0
2,716,844	-		IAI47_12870	0.30	+0.2
2,716,844	-		IAI47_12870	0.30	+0.8
2,716,844	-		IAI47_12870	0.30	+0.5
2,716,844	-		IAI47_12870	0.30	+0.6
2,716,844	-		IAI47_12870	0.30	+0.3
2,716,921	+		IAI47_12870	0.35	-0.4
2,716,921	+		IAI47_12870	0.35	-0.0
2,716,921	+		IAI47_12870	0.35	-0.1
2,716,922	-		IAI47_12870	0.35	+0.3
2,716,922	-		IAI47_12870	0.35	+0.4
2,716,922	-		IAI47_12870	0.35	+0.4
2,716,922	-		IAI47_12870	0.35	+0.2
2,716,979	+		IAI47_12870	0.38	-0.5
2,716,979	+		IAI47_12870	0.38	+0.2
2,716,979	+		IAI47_12870	0.38	-0.9
2,716,979	+		IAI47_12870	0.38	-0.2
2,716,979	+		IAI47_12870	0.38	-0.1
2,716,979	+		IAI47_12870	0.38	+1.3
2,716,980	-		IAI47_12870	0.38	-0.3
2,716,980	-		IAI47_12870	0.38	-0.7
2,716,980	-		IAI47_12870	0.38	-0.1