Strain Fitness in Pantoea sp. MT58 around IAI47_10285

Experiment: Ying_sugar7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 3
2,174,235	+		IAI47_10280	0.66	+0.8
2,174,235	+		IAI47_10280	0.66	-1.1
2,174,235	+		IAI47_10280	0.66	-2.6
2,174,235	+		IAI47_10280	0.66	-0.3
2,174,235	+		IAI47_10280	0.66	+0.4
2,174,235	+		IAI47_10280	0.66	+0.7
2,174,236	-		IAI47_10280	0.66	+1.5
2,174,236	-		IAI47_10280	0.66	-0.2
2,174,236	-		IAI47_10280	0.66	-0.4
2,174,236	-		IAI47_10280	0.66	+1.4
2,174,375	-		IAI47_10280	0.71	+1.8
2,174,407	+		IAI47_10280	0.72	+1.2
2,174,471	-		IAI47_10280	0.74	+0.9
2,174,491	+		IAI47_10280	0.75	+0.1
2,174,491	+		IAI47_10280	0.75	+1.9
2,174,531	+		IAI47_10280	0.76	-2.1
2,174,531	+		IAI47_10280	0.76	+0.1
2,174,532	-		IAI47_10280	0.76	-0.8
2,174,532	-		IAI47_10280	0.76	+0.2
2,174,626	+		IAI47_10280	0.79	+0.5
2,174,626	+		IAI47_10280	0.79	-0.2
2,174,627	-		IAI47_10280	0.79	-0.0
2,174,627	-		IAI47_10280	0.79	-2.6
2,174,646	-		IAI47_10280	0.80	-1.2
2,174,672	-		IAI47_10280	0.81	-1.8
2,174,704	+		IAI47_10280	0.82	+0.5
2,174,792	+		IAI47_10280	0.85	-0.6
2,174,792	+		IAI47_10280	0.85	+0.7
2,174,792	+		IAI47_10280	0.85	-1.0
2,174,859	-		IAI47_10280	0.87	-0.2
2,174,859	-		IAI47_10280	0.87	+1.0
2,174,888	+		IAI47_10280	0.88	-0.4
2,174,900	-		IAI47_10280	0.89	-1.1
2,174,984	+				-0.6
2,174,984	+				-0.3
2,174,985	-				+0.2
2,174,986	+				-1.2
2,174,986	+				-2.6
2,175,019	+				+0.6
2,175,019	+				+1.2
2,175,150	+				+0.6
2,175,150	+				+0.5
2,175,150	+				+1.8
2,175,150	+				-1.0
2,175,151	-				-2.2
2,175,167	-				-0.1
2,175,227	-				-0.5
2,175,303	+				+1.6
2,175,304	-				+0.2
2,175,588	+		IAI47_10285	0.15	+0.5
2,176,163	+		IAI47_10285	0.39	+1.2
2,176,200	+		IAI47_10285	0.41	+2.0
2,176,201	-		IAI47_10285	0.41	+0.2
2,176,201	-		IAI47_10285	0.41	-0.9
2,176,225	+		IAI47_10285	0.42	-0.4
2,176,225	+		IAI47_10285	0.42	-2.1
2,176,225	+		IAI47_10285	0.42	+1.0
2,176,225	+		IAI47_10285	0.42	+0.4
2,176,226	-		IAI47_10285	0.42	+0.7
2,176,226	-		IAI47_10285	0.42	-0.4
2,176,226	-		IAI47_10285	0.42	-0.5
2,176,226	-		IAI47_10285	0.42	-0.3
2,176,226	-		IAI47_10285	0.42	+3.2
2,176,369	+		IAI47_10285	0.48	-0.3
2,176,370	-		IAI47_10285	0.48	-1.2
2,176,407	+		IAI47_10285	0.50	+1.4
2,176,655	+		IAI47_10285	0.60	+0.5
2,176,656	-		IAI47_10285	0.60	+0.9
2,176,656	-		IAI47_10285	0.60	-0.5
2,176,742	+		IAI47_10285	0.64	-0.5
2,176,833	+		IAI47_10285	0.68	-0.4
2,176,834	-		IAI47_10285	0.68	+0.2
2,176,834	-		IAI47_10285	0.68	-0.4
2,176,902	+		IAI47_10285	0.71	-1.6
2,176,902	+		IAI47_10285	0.71	+0.4
2,176,902	+		IAI47_10285	0.71	-0.5
2,176,916	+		IAI47_10285	0.71	+0.1
2,176,916	+		IAI47_10285	0.71	-1.0
2,176,916	+		IAI47_10285	0.71	+0.2
2,176,916	+		IAI47_10285	0.71	-0.3
2,176,917	-		IAI47_10285	0.71	-1.8
2,176,917	-		IAI47_10285	0.71	-2.6
2,176,917	-		IAI47_10285	0.71	+0.0
2,177,168	+		IAI47_10285	0.82	-1.4
2,177,168	+		IAI47_10285	0.82	-0.3
2,177,169	-		IAI47_10285	0.82	+1.3
2,177,169	-		IAI47_10285	0.82	+0.0
2,177,172	+		IAI47_10285	0.82	-1.2
2,177,172	+		IAI47_10285	0.82	+0.8
2,177,325	-		IAI47_10285	0.88	-0.6
2,177,325	-		IAI47_10285	0.88	+0.7
2,177,378	+				-2.4
2,177,434	-				-0.3
2,177,460	+				+1.4
2,177,460	+				-0.3
2,177,460	+				+0.6
2,177,460	+				+1.4
2,177,460	+				+0.7
2,177,460	+				+1.3
2,177,461	-				-2.4
2,177,461	-				+0.0
2,177,461	-				-0.2
2,177,467	+				+1.1
2,177,467	+				+0.3
2,177,467	+				+1.7
2,177,467	+				-0.8
2,177,467	+				+0.8
2,177,467	+				-0.3
2,177,467	+				-0.2
2,177,468	-				-1.3
2,177,468	-				-1.2
2,177,468	-				-0.8
2,177,468	-				+0.4
2,177,470	+				+0.1
2,177,470	+				+1.5
2,177,470	+				+0.2
2,177,470	+				-1.2
2,177,470	+				+0.5
2,177,470	+				-1.0
2,177,470	+				-3.6
2,177,470	+				-1.0
2,177,470	+				+1.3
2,177,471	-				-1.8
2,177,471	-				+0.4
2,177,471	-				+0.4
2,177,471	-				+0.7
2,177,471	-				-2.1
2,177,471	-				+0.2
2,177,471	-				-1.6
2,177,471	-				+0.2
2,177,471	-				-2.8
2,177,471	-				-0.5
2,177,472	+				-2.0
2,177,472	+				+0.4
2,177,472	+				+1.5
2,177,472	+				-0.2
2,177,472	+				+1.5
2,177,472	+				-0.5
2,177,472	+				+0.4
2,177,472	+				+2.2
2,177,472	+				+0.8
2,177,472	+				+0.7
2,177,472	+				-0.5
2,177,472	+				-1.8
2,177,473	-				+0.2
2,177,473	-				+0.2
2,177,473	-				+1.7
2,177,473	-				+1.1
2,177,473	-				+0.2
2,177,473	-				-0.5
2,177,473	-				-0.2
2,177,473	-				-0.7
2,177,473	-				-1.2
2,177,473	-				+0.4
2,177,476	+				+1.6
2,177,476	+				+1.2
2,177,476	+				+0.7
2,177,476	+				-0.3
2,177,476	+				-0.8
2,177,477	-				-2.1
2,177,477	-				+1.6
2,177,477	-				-0.9
2,177,477	-				-0.2
2,177,477	-				-0.3
2,177,477	-				+1.2
2,177,521	-				-1.2
2,177,524	+				+0.5
2,177,527	-				+0.2
2,177,597	-				-0.7
2,177,597	-				+1.7
2,177,667	+		IAI47_10290	0.27	+1.1
2,177,667	+		IAI47_10290	0.27	+0.5
2,177,689	+		IAI47_10290	0.36	-0.7
2,177,689	+		IAI47_10290	0.36	-0.8
2,177,689	+		IAI47_10290	0.36	+0.0
2,177,689	+		IAI47_10290	0.36	-1.5
2,177,689	+		IAI47_10290	0.36	+0.2
2,177,690	-		IAI47_10290	0.36	+3.4
2,177,690	-		IAI47_10290	0.36	+1.0
2,177,690	-		IAI47_10290	0.36	+0.9
2,177,690	-		IAI47_10290	0.36	+0.6
2,177,690	-		IAI47_10290	0.36	-1.8
2,177,690	-		IAI47_10290	0.36	-0.9
2,177,708	+		IAI47_10290	0.43	-1.4
2,177,759	+		IAI47_10290	0.62	+0.2
2,177,759	+		IAI47_10290	0.62	-0.7
2,177,759	+		IAI47_10290	0.62	+1.2
2,177,760	-		IAI47_10290	0.62	+0.4
2,177,760	-		IAI47_10290	0.62	-0.8
2,177,760	-		IAI47_10290	0.62	-0.2
2,177,806	+		IAI47_10290	0.80	-1.2
2,177,807	-		IAI47_10290	0.80	-1.1
2,177,807	-		IAI47_10290	0.80	-0.8
2,177,852	+				+1.2
2,177,853	-				+1.1
2,177,867	+				-1.0
2,177,867	+				+0.6
2,177,868	-				+1.8
2,177,868	-				+1.2
2,177,925	+		IAI47_10295	0.15	-2.2
2,177,925	+		IAI47_10295	0.15	+0.7
2,177,926	-		IAI47_10295	0.15	+1.0
2,177,926	-		IAI47_10295	0.15	+0.8
2,177,926	-		IAI47_10295	0.15	+0.9
2,177,961	+		IAI47_10295	0.23	+0.2
2,177,961	+		IAI47_10295	0.23	+0.3
2,177,962	-		IAI47_10295	0.23	-1.1
2,177,962	-		IAI47_10295	0.23	-0.1
2,177,979	+		IAI47_10295	0.27	-0.1
2,177,979	+		IAI47_10295	0.27	+0.4
2,178,115	+		IAI47_10295	0.58	-0.1
2,178,116	-		IAI47_10295	0.59	-0.0
2,178,123	+		IAI47_10295	0.60	+0.8
2,178,123	+		IAI47_10295	0.60	+0.7
2,178,124	-		IAI47_10295	0.60	+0.3
2,178,124	-		IAI47_10295	0.60	-1.4
2,178,124	-		IAI47_10295	0.60	+0.6
2,178,124	-		IAI47_10295	0.60	+0.9
2,178,124	-		IAI47_10295	0.60	-0.2
2,178,126	+		IAI47_10295	0.61	+0.9
2,178,126	+		IAI47_10295	0.61	-1.4
2,178,126	+		IAI47_10295	0.61	+0.7
2,178,126	+		IAI47_10295	0.61	-0.1
2,178,126	+		IAI47_10295	0.61	-1.4
2,178,127	-		IAI47_10295	0.61	-0.1
2,178,229	-		IAI47_10295	0.85	+0.5
2,178,229	-		IAI47_10295	0.85	+1.4
2,178,243	+		IAI47_10295	0.88	-0.8
2,178,244	-		IAI47_10295	0.88	+1.2
2,178,327	+				-1.6
2,178,337	-				-0.2
2,178,337	-				-0.8
2,178,383	+				-0.8
2,178,384	-				-0.8
2,178,437	+		IAI47_10300	0.16	-0.4
2,178,437	+		IAI47_10300	0.16	+0.8
2,178,438	-		IAI47_10300	0.16	+2.7
2,178,438	-		IAI47_10300	0.16	+0.8
2,178,438	-		IAI47_10300	0.16	-1.4
2,178,438	-		IAI47_10300	0.16	+1.5
2,178,438	-		IAI47_10300	0.16	-0.5
2,178,438	-		IAI47_10300	0.16	+1.2
2,178,485	-		IAI47_10300	0.30	-2.0
2,178,564	+		IAI47_10300	0.53	-0.0
2,178,564	+		IAI47_10300	0.53	+3.8
2,178,566	+		IAI47_10300	0.54	-0.0
2,178,566	+		IAI47_10300	0.54	+0.6
2,178,566	+		IAI47_10300	0.54	-0.1
2,178,567	-		IAI47_10300	0.54	-2.1
2,178,567	-		IAI47_10300	0.54	-0.2
2,178,567	-		IAI47_10300	0.54	-0.4
2,178,567	-		IAI47_10300	0.54	-0.5
2,178,567	-		IAI47_10300	0.54	-0.7
2,178,567	-		IAI47_10300	0.54	-0.6
2,178,567	-		IAI47_10300	0.54	+0.7
2,178,567	-		IAI47_10300	0.54	+0.2