Strain Fitness in Pantoea sp. MT58 around IAI47_10255

Experiment: Ying_sugar7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 3
2,166,843	+		IAI47_10250	0.57	+0.6
2,166,844	-		IAI47_10250	0.57	+0.2
2,166,873	-		IAI47_10250	0.59	-0.8
2,166,933	+		IAI47_10250	0.62	-1.6
2,166,933	+		IAI47_10250	0.62	+0.2
2,166,933	+		IAI47_10250	0.62	+1.6
2,166,933	+		IAI47_10250	0.62	+1.2
2,166,933	+		IAI47_10250	0.62	-0.4
2,166,933	+		IAI47_10250	0.62	-0.4
2,166,933	+		IAI47_10250	0.62	+0.6
2,166,933	+		IAI47_10250	0.62	+1.6
2,166,933	+		IAI47_10250	0.62	-0.1
2,166,933	+		IAI47_10250	0.62	-0.4
2,166,934	-		IAI47_10250	0.62	+0.9
2,166,934	-		IAI47_10250	0.62	-0.3
2,166,934	-		IAI47_10250	0.62	-1.4
2,166,934	-		IAI47_10250	0.62	+0.1
2,166,934	-		IAI47_10250	0.62	+0.4
2,166,934	-		IAI47_10250	0.62	+1.1
2,166,934	-		IAI47_10250	0.62	+0.2
2,166,934	-		IAI47_10250	0.62	-1.2
2,166,934	-		IAI47_10250	0.62	+2.0
2,166,934	-		IAI47_10250	0.62	+0.4
2,166,934	-		IAI47_10250	0.62	-0.6
2,166,934	-		IAI47_10250	0.62	-1.8
2,166,975	+		IAI47_10250	0.64	-0.3
2,167,008	+		IAI47_10250	0.65	+0.4
2,167,008	+		IAI47_10250	0.65	-0.4
2,167,009	-		IAI47_10250	0.65	-1.2
2,167,035	+		IAI47_10250	0.66	+0.4
2,167,035	+		IAI47_10250	0.66	+1.1
2,167,074	-		IAI47_10250	0.68	+0.5
2,167,260	+		IAI47_10250	0.77	+0.5
2,167,260	+		IAI47_10250	0.77	-0.7
2,167,260	+		IAI47_10250	0.77	+2.4
2,167,260	+		IAI47_10250	0.77	+3.4
2,167,260	+		IAI47_10250	0.77	-1.0
2,167,261	-		IAI47_10250	0.77	-0.0
2,167,261	-		IAI47_10250	0.77	+0.0
2,167,262	+		IAI47_10250	0.77	+0.8
2,167,262	+		IAI47_10250	0.77	-0.2
2,167,262	+		IAI47_10250	0.77	+0.6
2,167,262	+		IAI47_10250	0.77	+0.5
2,167,263	-		IAI47_10250	0.77	+1.5
2,167,263	-		IAI47_10250	0.77	+0.2
2,167,301	-		IAI47_10250	0.79	+1.3
2,167,301	-		IAI47_10250	0.79	-1.4
2,167,301	-		IAI47_10250	0.79	-0.5
2,167,301	-		IAI47_10250	0.79	+1.0
2,167,349	+		IAI47_10250	0.81	+0.6
2,167,349	+		IAI47_10250	0.81	+0.2
2,167,350	-		IAI47_10250	0.81	+0.2
2,167,441	-		IAI47_10250	0.85	-0.1
2,167,441	-		IAI47_10250	0.85	-0.1
2,167,455	+		IAI47_10250	0.86	-2.4
2,167,476	+		IAI47_10250	0.87	-0.5
2,167,477	-		IAI47_10250	0.87	-0.5
2,167,497	+		IAI47_10250	0.88	-0.3
2,167,498	-		IAI47_10250	0.88	+1.4
2,167,538	+				+0.2
2,167,548	+				-0.8
2,167,548	+				-1.4
2,167,549	-				-0.5
2,167,549	-				+0.3
2,167,549	-				+0.5
2,167,576	-				+0.9
2,167,577	+				-0.8
2,167,577	+				-0.4
2,167,577	+				-0.4
2,167,577	+				+0.2
2,167,577	+				+0.2
2,167,577	+				+0.6
2,167,577	+				+0.9
2,167,577	+				-0.0
2,167,577	+				-0.5
2,167,577	+				-2.0
2,167,577	+				+0.6
2,167,578	-				+0.0
2,167,578	-				-0.5
2,167,578	-				+1.9
2,167,578	-				-0.2
2,167,578	-				+1.2
2,167,644	+				+0.2
2,167,644	+				+1.5
2,167,644	+				-2.1
2,167,644	+				+3.0
2,167,644	+				-0.5
2,167,644	+				-1.4
2,167,644	+				+0.5
2,167,644	+				-0.6
2,167,645	-				-0.1
2,167,645	-				+1.3
2,167,645	-				-1.8
2,167,645	-				+0.5
2,167,645	-				-0.8
2,167,645	-				-1.2
2,167,645	-				-1.4
2,167,645	-				+2.1
2,167,673	+				-1.2
2,167,673	+				-0.5
2,167,674	-				+0.1
2,167,674	-				-0.1
2,167,674	-				-0.1
2,167,674	-				+0.4
2,167,707	-				+2.8
2,167,707	-				+0.5
2,167,710	+				-0.9
2,167,710	+				+0.5
2,167,710	+				-0.2
2,167,710	+				+1.1
2,167,710	+				-2.1
2,167,710	+				-0.1
2,167,710	-				+2.2
2,167,711	-				+0.9
2,167,711	-				-0.8
2,167,711	-				-1.2
2,167,711	-				-0.1
2,167,711	-				-0.8
2,167,711	-				+0.2
2,167,711	-				+0.2
2,167,711	-				+0.7
2,167,734	+				+0.9
2,167,735	-				-2.4
2,167,746	+				+1.0
2,167,747	-				+1.0
2,167,784	-				-0.4
2,167,819	+				-1.0
2,167,819	+				+1.1
2,167,820	-				-1.4
2,167,820	-				+1.3
2,167,822	+				+0.4
2,167,822	+				+0.8
2,167,823	-				-1.4
2,167,823	-				-1.8
2,167,868	+		IAI47_10255	0.13	+0.7
2,167,885	+		IAI47_10255	0.16	-1.1
2,167,932	+		IAI47_10255	0.25	-1.1
2,167,944	+		IAI47_10255	0.27	+0.2
2,167,945	-		IAI47_10255	0.27	+0.2
2,167,945	-		IAI47_10255	0.27	-1.3
2,167,945	-		IAI47_10255	0.27	-1.2
2,167,945	-		IAI47_10255	0.27	-0.4
2,167,987	+		IAI47_10255	0.35	-0.5
2,168,191	+		IAI47_10255	0.71	-1.0
2,168,311	+				+0.6
2,168,314	+				+1.5
2,168,314	+				+1.8
2,168,314	+				+0.2
2,168,315	-				+0.8
2,168,315	-				-0.5
2,168,315	-				-1.0
2,168,370	+				-0.0
2,168,371	-				+1.2
2,168,371	-				+0.6
2,168,380	+				-0.5
2,168,381	-				+0.5
2,168,381	-				+0.2
2,168,381	-				+2.0
2,168,393	+				-0.3
2,168,393	+				+0.8
2,168,393	+				+2.1
2,168,394	-				+2.0
2,168,394	-				-1.1
2,168,394	-				+1.8
2,168,434	+		IAI47_10260	0.15	+0.2
2,168,435	-		IAI47_10260	0.15	-0.8
2,168,491	+		IAI47_10260	0.29	-0.2
2,168,491	+		IAI47_10260	0.29	+0.2
2,168,492	-		IAI47_10260	0.29	-0.5
2,168,492	-		IAI47_10260	0.29	-0.0
2,168,614	+		IAI47_10260	0.58	-1.4
2,168,614	+		IAI47_10260	0.58	+0.6
2,168,615	-		IAI47_10260	0.58	-0.3
2,168,615	-		IAI47_10260	0.58	-1.8
2,168,615	-		IAI47_10260	0.58	-1.1
2,168,615	-		IAI47_10260	0.58	+0.2
2,168,618	+		IAI47_10260	0.58	-0.4
2,168,618	+		IAI47_10260	0.58	-0.4
2,168,618	+		IAI47_10260	0.58	-1.8
2,168,618	+		IAI47_10260	0.58	-1.1
2,168,618	+		IAI47_10260	0.58	-1.4
2,168,618	+		IAI47_10260	0.58	+1.4
2,168,618	+		IAI47_10260	0.58	+0.2
2,168,618	+		IAI47_10260	0.58	-0.4
2,168,618	+		IAI47_10260	0.58	-1.8
2,168,619	-		IAI47_10260	0.59	+1.1
2,168,619	-		IAI47_10260	0.59	+0.2
2,168,619	-		IAI47_10260	0.59	-0.8
2,168,619	-		IAI47_10260	0.59	+0.8
2,168,619	-		IAI47_10260	0.59	+1.8
2,168,619	-		IAI47_10260	0.59	-0.6
2,168,619	-		IAI47_10260	0.59	+1.2
2,168,619	-		IAI47_10260	0.59	+1.5
2,168,619	-		IAI47_10260	0.59	-1.0
2,168,619	-		IAI47_10260	0.59	-1.1
2,168,678	+		IAI47_10260	0.73	-0.2
2,168,795	+				+0.1
2,168,795	+				-1.8
2,168,795	+				+0.6
2,168,821	+				-0.0
2,168,829	+				-0.8
2,168,830	-				+1.4
2,168,837	+				+0.8
2,168,869	+				+0.2
2,168,869	+				+1.7
2,168,870	-				-0.4
2,168,889	+				-0.3
2,168,890	-				-1.0
2,169,038	+		IAI47_10265	0.32	+0.2
2,169,039	-		IAI47_10265	0.32	+1.5
2,169,136	-		IAI47_10265	0.49	+1.6
2,169,136	-		IAI47_10265	0.49	+0.8
2,169,169	+		IAI47_10265	0.55	+0.0
2,169,169	+		IAI47_10265	0.55	-0.1
2,169,170	-		IAI47_10265	0.55	+0.2
2,169,170	-		IAI47_10265	0.55	+0.2
2,169,203	+		IAI47_10265	0.61	-2.8
2,169,204	-		IAI47_10265	0.61	-1.2
2,169,220	+		IAI47_10265	0.64	-0.3
2,169,221	-		IAI47_10265	0.65	+0.9
2,169,221	-		IAI47_10265	0.65	-0.7
2,169,241	+		IAI47_10265	0.68	-0.4
2,169,242	-		IAI47_10265	0.68	+0.9
2,169,319	+		IAI47_10265	0.82	+1.0
2,169,319	+		IAI47_10265	0.82	-1.1
2,169,320	-		IAI47_10265	0.82	+1.3
2,169,320	-		IAI47_10265	0.82	+1.2