Strain Fitness in Pantoea sp. MT58 around IAI47_09650

Experiment: Ying_sugar7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 3
2,042,291	+		IAI47_09645	0.41	+0.4
2,042,291	+		IAI47_09645	0.41	-1.8
2,042,292	-		IAI47_09645	0.41	-0.2
2,042,292	-		IAI47_09645	0.41	-0.5
2,042,292	-		IAI47_09645	0.41	+0.2
2,042,293	+		IAI47_09645	0.41	-0.4
2,042,294	-		IAI47_09645	0.42	+1.2
2,042,294	-		IAI47_09645	0.42	-0.5
2,042,353	+		IAI47_09645	0.45	-1.3
2,042,354	-		IAI47_09645	0.45	-3.1
2,042,375	+		IAI47_09645	0.47	+0.8
2,042,406	+		IAI47_09645	0.49	-2.0
2,042,406	+		IAI47_09645	0.49	-1.3
2,042,406	+		IAI47_09645	0.49	+0.2
2,042,407	-		IAI47_09645	0.49	+2.2
2,042,407	-		IAI47_09645	0.49	-0.1
2,042,506	+		IAI47_09645	0.55	-0.5
2,042,506	+		IAI47_09645	0.55	-0.3
2,042,507	-		IAI47_09645	0.55	-1.5
2,042,507	-		IAI47_09645	0.55	+0.6
2,042,507	-		IAI47_09645	0.55	-0.6
2,042,516	-		IAI47_09645	0.55	-0.5
2,042,516	-		IAI47_09645	0.55	+0.0
2,042,516	-		IAI47_09645	0.55	+1.2
2,042,565	-		IAI47_09645	0.59	-2.3
2,042,592	+		IAI47_09645	0.60	-0.4
2,042,592	+		IAI47_09645	0.60	-0.8
2,042,593	-		IAI47_09645	0.60	+0.8
2,042,623	+		IAI47_09645	0.62	+0.4
2,042,623	+		IAI47_09645	0.62	+0.8
2,042,624	-		IAI47_09645	0.62	-0.6
2,042,669	+		IAI47_09645	0.65	+1.0
2,042,669	+		IAI47_09645	0.65	-2.5
2,042,669	+		IAI47_09645	0.65	-1.3
2,042,670	-		IAI47_09645	0.65	+0.8
2,042,670	-		IAI47_09645	0.65	+0.0
2,042,670	-		IAI47_09645	0.65	-0.6
2,042,768	+		IAI47_09645	0.71	-0.4
2,042,768	+		IAI47_09645	0.71	-0.9
2,042,768	+		IAI47_09645	0.71	-0.1
2,042,768	+		IAI47_09645	0.71	-2.1
2,042,769	-		IAI47_09645	0.71	-1.8
2,042,769	-		IAI47_09645	0.71	-0.3
2,042,839	+		IAI47_09645	0.76	+0.7
2,042,849	+		IAI47_09645	0.76	+0.6
2,042,849	+		IAI47_09645	0.76	+0.8
2,042,849	+		IAI47_09645	0.76	-0.8
2,042,849	+		IAI47_09645	0.76	-0.0
2,042,849	+		IAI47_09645	0.76	+0.6
2,042,849	+		IAI47_09645	0.76	+2.4
2,042,850	-		IAI47_09645	0.76	-2.1
2,042,850	-		IAI47_09645	0.76	+0.0
2,042,850	-		IAI47_09645	0.76	+0.7
2,042,850	-		IAI47_09645	0.76	+0.7
2,042,864	+		IAI47_09645	0.77	+1.1
2,042,939	-		IAI47_09645	0.82	+1.8
2,042,958	-		IAI47_09645	0.83	+1.2
2,042,965	+		IAI47_09645	0.84	+0.2
2,042,965	+		IAI47_09645	0.84	+2.2
2,042,965	+		IAI47_09645	0.84	+0.2
2,042,965	+		IAI47_09645	0.84	-1.0
2,042,966	-		IAI47_09645	0.84	+0.0
2,042,966	-		IAI47_09645	0.84	-1.1
2,042,966	-		IAI47_09645	0.84	-2.9
2,042,966	-		IAI47_09645	0.84	-0.2
2,042,966	-		IAI47_09645	0.84	-0.3
2,042,986	+		IAI47_09645	0.85	-0.2
2,042,986	+		IAI47_09645	0.85	-0.8
2,042,986	+		IAI47_09645	0.85	-1.0
2,042,986	+		IAI47_09645	0.85	+1.5
2,042,987	-		IAI47_09645	0.85	+1.2
2,042,987	-		IAI47_09645	0.85	-0.7
2,042,987	-		IAI47_09645	0.85	-0.3
2,043,005	+		IAI47_09645	0.86	-0.8
2,043,006	-		IAI47_09645	0.86	-0.5
2,043,006	-		IAI47_09645	0.86	+0.8
2,043,006	-		IAI47_09645	0.86	+1.0
2,043,024	+		IAI47_09645	0.87	-0.2
2,043,025	-		IAI47_09645	0.87	-0.1
2,043,025	-		IAI47_09645	0.87	+1.0
2,043,074	+				+0.2
2,043,075	-				+0.5
2,043,093	+				+1.0
2,043,094	-				+0.7
2,043,094	-				-0.9
2,043,196	+				-1.0
2,043,196	+				+0.8
2,043,196	+				+0.1
2,043,196	+				-1.1
2,043,196	+				+0.2
2,043,196	+				-1.6
2,043,197	-				+0.9
2,043,197	-				-2.2
2,043,197	-				+0.2
2,043,197	-				-1.1
2,043,197	-				-1.0
2,043,197	-				+1.7
2,043,197	-				-1.1
2,043,197	-				-2.1
2,043,197	-				-0.8
2,043,203	+				+0.1
2,043,203	+				-0.8
2,043,203	+				-0.8
2,043,203	+				-0.9
2,043,203	+				+1.0
2,043,214	+				+0.8
2,043,214	+				-0.3
2,043,215	-				+1.7
2,043,217	+				-1.1
2,043,217	+				-2.1
2,043,217	+				-0.5
2,043,217	+				+0.8
2,043,218	-				+0.5
2,043,218	-				+1.6
2,043,218	-				+0.2
2,043,218	-				+0.2
2,043,218	-				-0.3
2,043,218	-				-0.3
2,043,218	-				-0.6
2,043,238	+				-0.6
2,043,331	-				+0.5
2,043,331	-				-2.9
2,043,455	+		IAI47_09650	0.20	-0.2
2,043,455	+		IAI47_09650	0.20	+0.2
2,043,456	-		IAI47_09650	0.20	+0.2
2,043,456	-		IAI47_09650	0.20	+1.2
2,043,464	+		IAI47_09650	0.21	-1.0
2,043,488	+		IAI47_09650	0.24	+0.6
2,043,489	-		IAI47_09650	0.24	-0.5
2,043,489	-		IAI47_09650	0.24	+0.3
2,043,489	-		IAI47_09650	0.24	-0.1
2,043,505	+		IAI47_09650	0.26	+0.4
2,043,743	+		IAI47_09650	0.52	-0.8
2,043,876	-		IAI47_09650	0.66	+1.2
2,043,884	+		IAI47_09650	0.67	-0.2
2,043,885	-		IAI47_09650	0.67	+0.5
2,043,885	-		IAI47_09650	0.67	-1.3
2,043,885	-		IAI47_09650	0.67	+2.1
2,043,885	-		IAI47_09650	0.67	+0.1
2,043,885	-		IAI47_09650	0.67	+0.7
2,043,921	+		IAI47_09650	0.71	+0.4
2,043,921	+		IAI47_09650	0.71	-1.1
2,043,955	+		IAI47_09650	0.75	-0.8
2,043,955	+		IAI47_09650	0.75	+1.2
2,043,955	+		IAI47_09650	0.75	+1.6
2,043,956	-		IAI47_09650	0.75	+1.1
2,043,956	-		IAI47_09650	0.75	+1.2
2,043,956	-		IAI47_09650	0.75	-1.5
2,043,956	-		IAI47_09650	0.75	+0.9
2,043,977	+		IAI47_09650	0.77	+0.2
2,043,977	+		IAI47_09650	0.77	-1.8
2,043,977	+		IAI47_09650	0.77	+0.7
2,043,977	+		IAI47_09650	0.77	+0.8
2,043,977	+		IAI47_09650	0.77	-1.1
2,043,977	+		IAI47_09650	0.77	-0.2
2,043,978	-		IAI47_09650	0.77	-1.0
2,043,978	-		IAI47_09650	0.77	-0.1
2,043,978	-		IAI47_09650	0.77	+0.8
2,043,978	-		IAI47_09650	0.77	+0.8
2,043,978	-		IAI47_09650	0.77	+0.9
2,044,179	+				+1.0
2,044,179	+				+0.6
2,044,179	+				-0.1
2,044,179	+				-1.6
2,044,180	-				-0.2
2,044,180	-				+0.3
2,044,180	-				+0.2
2,044,180	-				-1.0
2,044,180	-				+1.0
2,044,180	-				+3.0
2,044,208	+				+2.6
2,044,209	-				-0.2
2,044,209	-				+0.7
2,044,209	-				-0.6
2,044,209	-				+1.2
2,044,232	+				-0.2
2,044,233	-				+1.5
2,044,253	-				-0.8
2,044,253	-				-0.5
2,044,253	-				-0.3
2,044,260	+				-0.3
2,044,260	+				-1.5
2,044,260	+				+0.2
2,044,292	+				+2.7
2,044,293	-				-0.2
2,044,303	-				+2.3
2,044,362	-				-3.2
2,044,362	-				+0.4
2,044,457	+				+0.3
2,044,458	-				-1.6
2,044,461	+				+0.1
2,044,461	+				+0.7
2,044,461	+				-1.9
2,044,461	+				+0.8
2,044,462	-				+0.6
2,044,462	-				+0.2
2,044,462	-				+1.9
2,044,501	+		IAI47_09655	0.12	-0.4
2,044,501	+		IAI47_09655	0.12	+0.4
2,044,502	-		IAI47_09655	0.12	+0.9
2,044,502	-		IAI47_09655	0.12	-0.3
2,044,502	-		IAI47_09655	0.12	-0.5
2,044,502	-		IAI47_09655	0.12	-1.0
2,044,506	+		IAI47_09655	0.13	-0.3
2,044,506	+		IAI47_09655	0.13	-1.2
2,044,506	+		IAI47_09655	0.13	-1.5
2,044,506	+		IAI47_09655	0.13	+0.2
2,044,507	-		IAI47_09655	0.13	+0.1
2,044,507	-		IAI47_09655	0.13	-0.5
2,044,507	-		IAI47_09655	0.13	-0.1
2,044,507	-		IAI47_09655	0.13	-1.3
2,044,595	+		IAI47_09655	0.19	-1.2
2,044,596	-		IAI47_09655	0.19	-1.3
2,044,614	+		IAI47_09655	0.20	-0.1
2,044,614	+		IAI47_09655	0.20	-0.7
2,044,648	-		IAI47_09655	0.23	+0.7
2,044,685	+		IAI47_09655	0.25	+1.4
2,044,685	+		IAI47_09655	0.25	+0.8
2,044,685	+		IAI47_09655	0.25	+0.2
2,044,686	-		IAI47_09655	0.25	+0.8
2,044,686	-		IAI47_09655	0.25	-0.8
2,044,780	+		IAI47_09655	0.32	+0.2
2,044,780	+		IAI47_09655	0.32	-0.4
2,044,781	-		IAI47_09655	0.32	-0.2
2,044,864	-		IAI47_09655	0.38	+0.2
2,044,879	+		IAI47_09655	0.39	-1.6
2,044,985	+		IAI47_09655	0.46	+1.4
2,045,073	+		IAI47_09655	0.53	+0.7
2,045,074	-		IAI47_09655	0.53	+0.2
2,045,074	-		IAI47_09655	0.53	+1.0
2,045,074	-		IAI47_09655	0.53	-0.1
2,045,074	-		IAI47_09655	0.53	-0.2
2,045,137	+		IAI47_09655	0.57	-0.9
2,045,137	+		IAI47_09655	0.57	+1.2