Strain Fitness in Pantoea sp. MT58 around IAI47_09300

Experiment: Ying_sugar7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 3
1,958,658	+		IAI47_09295	0.17	-0.3
1,958,659	-		IAI47_09295	0.17	+2.2
1,958,659	-		IAI47_09295	0.17	-0.6
1,958,672	+		IAI47_09295	0.19	-1.1
1,958,696	+		IAI47_09295	0.21	+0.0
1,958,697	-		IAI47_09295	0.21	+0.9
1,958,703	+		IAI47_09295	0.22	+0.3
1,958,790	-		IAI47_09295	0.31	+1.6
1,958,814	-				-0.5
1,958,831	+		IAI47_09295	0.35	-0.1
1,958,831	+		IAI47_09295	0.35	-0.4
1,958,863	+		IAI47_09295	0.38	+0.6
1,958,863	+		IAI47_09295	0.38	-0.3
1,958,863	+		IAI47_09295	0.38	-0.7
1,958,864	-		IAI47_09295	0.38	-1.9
1,958,864	-		IAI47_09295	0.38	-0.5
1,958,864	-		IAI47_09295	0.38	-2.7
1,958,864	-		IAI47_09295	0.38	-0.1
1,958,864	-		IAI47_09295	0.38	+0.6
1,958,864	-		IAI47_09295	0.38	-2.3
1,958,864	-		IAI47_09295	0.38	+2.0
1,958,884	+		IAI47_09295	0.40	+0.6
1,958,955	+		IAI47_09295	0.47	+0.0
1,958,955	+		IAI47_09295	0.47	-0.7
1,958,955	+		IAI47_09295	0.47	+0.3
1,958,956	-		IAI47_09295	0.48	+1.8
1,958,964	+		IAI47_09295	0.48	+0.8
1,959,039	-		IAI47_09295	0.56	+0.8
1,959,083	+		IAI47_09295	0.60	-0.5
1,959,083	+		IAI47_09295	0.60	+0.8
1,959,087	+		IAI47_09295	0.61	+1.0
1,959,087	+		IAI47_09295	0.61	-1.3
1,959,087	+		IAI47_09295	0.61	+1.7
1,959,087	+		IAI47_09295	0.61	+0.5
1,959,087	+		IAI47_09295	0.61	-0.4
1,959,088	-		IAI47_09295	0.61	-0.4
1,959,088	-		IAI47_09295	0.61	-0.9
1,959,088	-		IAI47_09295	0.61	-0.5
1,959,088	-		IAI47_09295	0.61	+0.3
1,959,088	-		IAI47_09295	0.61	-2.2
1,959,088	-		IAI47_09295	0.61	-1.0
1,959,088	-		IAI47_09295	0.61	-0.4
1,959,088	-		IAI47_09295	0.61	+0.3
1,959,130	-		IAI47_09295	0.65	-1.5
1,959,130	-		IAI47_09295	0.65	+1.1
1,959,195	+		IAI47_09295	0.72	-0.3
1,959,196	-		IAI47_09295	0.72	+0.6
1,959,196	-		IAI47_09295	0.72	+0.7
1,959,201	+		IAI47_09295	0.72	-0.7
1,959,210	+		IAI47_09295	0.73	+1.1
1,959,400	-				+0.8
1,959,400	-				+0.6
1,959,400	-				+1.0
1,959,408	+				+1.5
1,959,408	+				-0.8
1,959,408	+				-0.7
1,959,409	-				-0.6
1,959,413	-				+0.4
1,959,413	-				-2.2
1,959,413	-				+1.8
1,959,413	-				+0.5
1,959,426	+				+0.9
1,959,426	+				+1.8
1,959,426	+				+0.9
1,959,427	-				-0.4
1,959,462	+				+1.0
1,959,465	+				+0.7
1,959,465	+				+1.7
1,959,465	+				+1.3
1,959,466	-				-1.5
1,959,466	-				+0.5
1,959,466	-				+0.5
1,959,466	-				+0.3
1,959,469	+				-0.3
1,959,469	+				+2.8
1,959,470	-				-1.5
1,959,478	+				+0.8
1,959,527	+				+1.0
1,959,528	-				+0.3
1,959,528	-				+0.2
1,959,528	-				+1.0
1,959,528	-				+1.4
1,959,565	+				+0.1
1,959,565	+				-0.3
1,959,581	-				+0.3
1,959,581	-				+0.6
1,959,581	-				+0.3
1,959,581	-				-1.8
1,959,585	-				+0.3
1,959,598	-				-2.2
1,959,600	-				+1.5
1,959,625	+				+0.3
1,959,625	+				-0.7
1,959,625	+				-1.8
1,959,625	+				-1.5
1,959,625	+				-0.5
1,959,625	+				-0.9
1,959,625	+				+0.3
1,959,625	+				-0.7
1,959,626	-				-2.7
1,959,626	-				+0.7
1,959,629	-				-1.3
1,959,629	-				-1.2
1,959,648	+				-1.9
1,959,648	+				-1.1
1,959,648	+				-1.3
1,959,649	-				-1.3
1,959,649	-				-0.3
1,959,649	-				-1.9
1,959,653	-				-0.7
1,959,668	-				-3.5
1,959,668	-				-1.0
1,959,678	+				-1.2
1,959,689	+				-3.3
1,959,690	-				-1.0
1,959,706	+		IAI47_09300	0.10	-1.3
1,959,785	+		IAI47_09300	0.19	-0.7
1,959,785	+		IAI47_09300	0.19	-2.5
1,959,785	+		IAI47_09300	0.19	+0.0
1,959,786	-		IAI47_09300	0.19	+0.8
1,959,786	-		IAI47_09300	0.19	-2.5
1,959,786	-		IAI47_09300	0.19	+0.8
1,959,786	-		IAI47_09300	0.19	-2.1
1,959,786	-		IAI47_09300	0.19	-1.7
1,959,923	+		IAI47_09300	0.35	-2.4
1,959,924	-		IAI47_09300	0.35	-1.1
1,959,924	-		IAI47_09300	0.35	-2.5
1,960,099	+		IAI47_09300	0.56	-1.1
1,960,124	+		IAI47_09300	0.58	-1.7
1,960,125	-		IAI47_09300	0.59	-1.5
1,960,205	+		IAI47_09300	0.68	-2.1
1,960,205	+		IAI47_09300	0.68	-1.3
1,960,205	+		IAI47_09300	0.68	-1.7
1,960,206	-		IAI47_09300	0.68	-1.9
1,960,206	-		IAI47_09300	0.68	-1.4
1,960,206	-		IAI47_09300	0.68	-1.3
1,960,253	+		IAI47_09300	0.73	-1.1
1,960,253	+		IAI47_09300	0.73	-0.2
1,960,253	+		IAI47_09300	0.73	-1.5
1,960,254	-		IAI47_09300	0.73	-1.7
1,960,273	+		IAI47_09300	0.76	+0.3
1,960,366	+		IAI47_09300	0.86	-0.4
1,960,366	+		IAI47_09300	0.86	-1.4
1,960,388	+		IAI47_09300	0.89	-1.2
1,960,388	+		IAI47_09300	0.89	-0.5
1,960,389	-		IAI47_09300	0.89	-0.5
1,960,389	-		IAI47_09300	0.89	-1.5
1,960,399	+				-1.1
1,960,408	+				-0.2
1,960,408	+				-1.3
1,960,408	+				-0.2
1,960,409	-				-2.9
1,960,414	+				-2.5
1,960,414	+				+0.3
1,960,414	+				-0.7
1,960,414	+				-2.2
1,960,415	-				-1.3
1,960,421	+				-1.2
1,960,421	+				-0.5
1,960,421	+				-1.2
1,960,421	+				-0.8
1,960,421	+				-2.1
1,960,421	+				+0.7
1,960,421	+				-2.1
1,960,421	+				-2.4
1,960,421	+				-0.4
1,960,421	+				-1.1
1,960,421	+				-1.7
1,960,421	+				-0.7
1,960,422	-				-2.3
1,960,422	-				+0.8
1,960,422	-				-1.1
1,960,422	-				-2.2
1,960,422	-				-1.0
1,960,422	-				-2.1
1,960,437	+				+0.3
1,960,437	+				+0.5
1,960,438	-				+0.2
1,960,438	-				-0.7
1,960,438	-				+1.4
1,960,443	+				+1.6
1,960,443	+				+2.0
1,960,444	-				+0.3
1,960,471	+				+1.3
1,960,498	-				+1.6
1,960,516	+				+0.3
1,960,564	-				+0.3
1,960,564	-				-1.3
1,960,709	-		IAI47_09305	0.11	-0.7
1,960,919	-		IAI47_09305	0.21	-0.7
1,960,957	+		IAI47_09305	0.23	-1.3
1,960,958	-		IAI47_09305	0.23	+1.3
1,961,011	+		IAI47_09305	0.26	-1.3
1,961,128	+		IAI47_09305	0.32	-2.1
1,961,154	-		IAI47_09305	0.33	+0.3
1,961,157	-		IAI47_09305	0.33	+0.3
1,961,198	-		IAI47_09305	0.35	+0.3
1,961,375	-		IAI47_09305	0.44	-1.7