Strain Fitness in Pantoea sp. MT58 around IAI47_09080

Experiment: Ying_sugar7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 3
1,918,321	+				-0.1
1,918,321	+				+0.3
1,918,321	+				-0.7
1,918,321	+				-3.3
1,918,321	+				-0.7
1,918,321	+				-0.7
1,918,322	-				+0.8
1,918,322	-				+1.1
1,918,322	-				+0.3
1,918,322	-				+0.7
1,918,325	+				-1.3
1,918,325	+				-0.5
1,918,325	+				+1.3
1,918,325	+				+0.3
1,918,325	+				+0.9
1,918,325	+				-0.5
1,918,325	+				+0.3
1,918,325	+				-0.5
1,918,325	+				-1.0
1,918,325	+				-0.7
1,918,325	+				-0.1
1,918,325	+				+0.3
1,918,325	+				+0.3
1,918,326	-				+3.3
1,918,326	-				+0.7
1,918,326	-				-1.3
1,918,326	-				-0.4
1,918,326	-				-1.0
1,918,326	-				-0.2
1,918,326	-				+1.6
1,918,326	-				-2.7
1,918,326	-				+0.6
1,918,326	-				-1.5
1,918,326	-				-0.8
1,918,326	-				+1.9
1,918,326	-				-0.3
1,918,326	-				-0.0
1,918,327	+				-1.1
1,918,327	+				-0.7
1,918,327	+				+0.5
1,918,328	-				+0.3
1,918,351	-				+0.3
1,918,351	-				+0.9
1,918,354	+				+1.0
1,918,435	+				+1.4
1,918,435	+				-0.9
1,918,436	-				-0.3
1,918,504	+		IAI47_09075	0.16	+1.3
1,918,505	-		IAI47_09075	0.16	+0.3
1,918,505	-		IAI47_09075	0.16	+0.2
1,918,517	+		IAI47_09075	0.17	-0.2
1,918,518	-		IAI47_09075	0.17	+0.3
1,918,518	-		IAI47_09075	0.17	-1.0
1,918,518	-		IAI47_09075	0.17	+0.2
1,918,547	+		IAI47_09075	0.20	-0.1
1,918,547	+		IAI47_09075	0.20	+0.3
1,918,547	+		IAI47_09075	0.20	+1.4
1,918,547	+		IAI47_09075	0.20	-0.5
1,918,547	+		IAI47_09075	0.20	+1.2
1,918,547	+		IAI47_09075	0.20	-2.1
1,918,547	+		IAI47_09075	0.20	+0.0
1,918,547	+		IAI47_09075	0.20	-1.1
1,918,547	+		IAI47_09075	0.20	-3.0
1,918,547	+		IAI47_09075	0.20	+0.6
1,918,548	-		IAI47_09075	0.20	+0.6
1,918,548	-		IAI47_09075	0.20	-0.1
1,918,548	-		IAI47_09075	0.20	+0.6
1,918,548	-		IAI47_09075	0.20	+1.6
1,918,548	-		IAI47_09075	0.20	-1.3
1,918,548	-		IAI47_09075	0.20	-0.1
1,918,548	-		IAI47_09075	0.20	-0.7
1,918,548	-		IAI47_09075	0.20	-0.7
1,918,548	-		IAI47_09075	0.20	+0.3
1,918,548	-		IAI47_09075	0.20	-1.6
1,918,548	-		IAI47_09075	0.20	+0.7
1,918,548	-		IAI47_09075	0.20	-0.9
1,918,548	-		IAI47_09075	0.20	+0.3
1,918,548	-		IAI47_09075	0.20	-0.7
1,918,557	-		IAI47_09075	0.21	-0.5
1,918,557	-		IAI47_09075	0.21	-0.4
1,918,597	+		IAI47_09075	0.26	-2.1
1,918,602	-		IAI47_09075	0.26	-0.6
1,918,602	-		IAI47_09075	0.26	+1.3
1,918,602	-		IAI47_09075	0.26	-0.5
1,918,622	+		IAI47_09075	0.28	-0.7
1,918,622	+		IAI47_09075	0.28	+1.3
1,918,622	+		IAI47_09075	0.28	-0.7
1,918,689	+		IAI47_09075	0.36	+0.4
1,918,690	-		IAI47_09075	0.36	+0.9
1,918,724	-		IAI47_09075	0.39	-1.6
1,918,735	+		IAI47_09075	0.41	-0.7
1,918,735	+		IAI47_09075	0.41	+1.0
1,918,735	+		IAI47_09075	0.41	+0.3
1,918,735	+		IAI47_09075	0.41	-1.5
1,918,735	+		IAI47_09075	0.41	+0.7
1,918,735	+		IAI47_09075	0.41	-0.7
1,918,735	+		IAI47_09075	0.41	+2.0
1,918,736	-		IAI47_09075	0.41	-1.1
1,918,736	-		IAI47_09075	0.41	+0.6
1,918,736	-		IAI47_09075	0.41	-1.0
1,918,736	-		IAI47_09075	0.41	+0.7
1,918,736	-		IAI47_09075	0.41	+0.3
1,918,736	-		IAI47_09075	0.41	+1.6
1,918,736	-		IAI47_09075	0.41	+0.9
1,918,736	-		IAI47_09075	0.41	+0.3
1,918,736	-		IAI47_09075	0.41	+1.3
1,918,736	-		IAI47_09075	0.41	-0.6
1,918,736	-		IAI47_09075	0.41	-0.3
1,918,736	-		IAI47_09075	0.41	+1.3
1,918,736	-		IAI47_09075	0.41	-0.7
1,918,736	-		IAI47_09075	0.41	+3.3
1,918,736	-		IAI47_09075	0.41	+0.1
1,918,736	-		IAI47_09075	0.41	+1.9
1,918,736	-		IAI47_09075	0.41	-1.4
1,918,736	-		IAI47_09075	0.41	+0.0
1,918,736	-		IAI47_09075	0.41	-1.2
1,918,736	-		IAI47_09075	0.41	-1.3
1,918,736	-		IAI47_09075	0.41	-0.1
1,918,737	+		IAI47_09075	0.41	+0.3
1,918,737	+		IAI47_09075	0.41	+0.3
1,918,737	+		IAI47_09075	0.41	-2.1
1,918,738	-		IAI47_09075	0.41	-0.9
1,918,738	-		IAI47_09075	0.41	-1.5
1,918,738	-		IAI47_09075	0.41	+0.5
1,918,738	-		IAI47_09075	0.41	+0.3
1,918,738	-		IAI47_09075	0.41	-0.5
1,918,877	+		IAI47_09075	0.56	-0.6
1,918,877	+		IAI47_09075	0.56	-0.4
1,918,877	+		IAI47_09075	0.56	+0.8
1,918,877	+		IAI47_09075	0.56	-0.7
1,918,877	+		IAI47_09075	0.56	-0.4
1,918,878	-		IAI47_09075	0.56	+1.9
1,918,878	-		IAI47_09075	0.56	+0.3
1,918,878	-		IAI47_09075	0.56	+0.3
1,918,913	+		IAI47_09075	0.60	-0.3
1,918,913	+		IAI47_09075	0.60	-0.6
1,918,913	+		IAI47_09075	0.60	+1.4
1,918,913	+		IAI47_09075	0.60	-2.3
1,918,913	+		IAI47_09075	0.60	-0.7
1,918,914	-		IAI47_09075	0.60	+1.0
1,918,914	-		IAI47_09075	0.60	-0.1
1,918,914	-		IAI47_09075	0.60	-1.6
1,918,915	+		IAI47_09075	0.60	-1.1
1,918,915	+		IAI47_09075	0.60	+1.3
1,918,925	-		IAI47_09075	0.61	+1.6
1,919,063	+		IAI47_09075	0.76	+0.3
1,919,063	+		IAI47_09075	0.76	-2.1
1,919,063	+		IAI47_09075	0.76	-0.5
1,919,063	+		IAI47_09075	0.76	-0.3
1,919,063	+		IAI47_09075	0.76	+0.0
1,919,063	+		IAI47_09075	0.76	+1.3
1,919,063	+		IAI47_09075	0.76	+3.3
1,919,120	+		IAI47_09075	0.82	+0.5
1,919,120	+		IAI47_09075	0.82	+0.4
1,919,120	+		IAI47_09075	0.82	-0.3
1,919,121	-		IAI47_09075	0.83	-0.9
1,919,121	-		IAI47_09075	0.83	+0.3
1,919,121	-		IAI47_09075	0.83	-1.1
1,919,121	-		IAI47_09075	0.83	-0.3
1,919,174	+		IAI47_09075	0.88	-0.4
1,919,174	+		IAI47_09075	0.88	-0.2
1,919,174	+		IAI47_09075	0.88	-1.1
1,919,175	-		IAI47_09075	0.88	+2.6
1,919,175	-		IAI47_09075	0.88	-1.3
1,919,175	-		IAI47_09075	0.88	+0.3
1,919,249	+				+0.7
1,919,250	-				+0.0
1,919,250	-				+0.6
1,919,303	+				-0.6
1,919,303	+				+0.3
1,919,303	+				-1.3
1,919,303	+				-2.3
1,919,303	+				-0.3
1,919,303	+				+0.5
1,919,304	-				-0.2
1,919,304	-				+0.9
1,919,304	-				-0.1
1,919,304	-				-0.1
1,919,304	-				+0.3
1,919,304	-				-0.1
1,919,304	-				+0.9
1,919,304	-				-1.3
1,919,354	+				-1.7
1,919,354	+				+0.3
1,919,354	+				+0.4
1,919,354	+				-1.1
1,919,355	-				-1.3
1,919,395	-		IAI47_09080	0.11	-1.0
1,919,415	-		IAI47_09080	0.13	-1.5
1,919,415	-		IAI47_09080	0.13	-2.5
1,919,435	+		IAI47_09080	0.15	+0.1
1,919,435	+		IAI47_09080	0.15	+1.6
1,919,435	+		IAI47_09080	0.15	-1.1
1,919,436	-		IAI47_09080	0.15	-1.2
1,919,436	-		IAI47_09080	0.15	+1.0
1,919,436	-		IAI47_09080	0.15	-0.7
1,919,436	-		IAI47_09080	0.15	-1.1
1,919,436	-		IAI47_09080	0.15	+0.3
1,919,439	-		IAI47_09080	0.16	+0.1
1,919,439	-		IAI47_09080	0.16	-0.1
1,919,439	-		IAI47_09080	0.16	+0.1
1,919,439	-		IAI47_09080	0.16	-1.1
1,919,439	-		IAI47_09080	0.16	+1.3
1,919,485	+		IAI47_09080	0.21	-0.8
1,919,573	+		IAI47_09080	0.30	-0.9
1,919,574	-		IAI47_09080	0.31	-0.8
1,919,574	-		IAI47_09080	0.31	-0.7
1,919,601	+		IAI47_09080	0.34	+0.3
1,919,601	+		IAI47_09080	0.34	-1.5
1,919,601	+		IAI47_09080	0.34	+1.9
1,919,602	-		IAI47_09080	0.34	+0.4
1,919,602	-		IAI47_09080	0.34	-0.7
1,919,602	-		IAI47_09080	0.34	-0.5
1,919,602	-		IAI47_09080	0.34	-0.3
1,919,602	-		IAI47_09080	0.34	-0.1
1,919,622	-		IAI47_09080	0.36	+1.6
1,919,660	-		IAI47_09080	0.40	+0.8
1,919,660	-		IAI47_09080	0.40	+1.0
1,919,660	-		IAI47_09080	0.40	-0.5
1,919,678	-		IAI47_09080	0.42	+0.5
1,919,712	+		IAI47_09080	0.46	-1.3
1,919,742	+		IAI47_09080	0.49	+0.3
1,919,742	+		IAI47_09080	0.49	+0.4
1,919,742	+		IAI47_09080	0.49	-0.4
1,919,742	+		IAI47_09080	0.49	-0.7
1,919,743	-		IAI47_09080	0.49	-0.1
1,919,743	-		IAI47_09080	0.49	-1.7
1,919,781	+		IAI47_09080	0.53	-3.7
1,919,782	-		IAI47_09080	0.53	+0.3
1,919,785	-		IAI47_09080	0.54	-1.7
1,919,785	-		IAI47_09080	0.54	+0.5
1,919,785	-		IAI47_09080	0.54	-0.5
1,919,838	+		IAI47_09080	0.60	+0.2
1,919,839	-		IAI47_09080	0.60	-0.7
1,919,907	-		IAI47_09080	0.67	+0.3
1,919,907	-		IAI47_09080	0.67	+1.2
1,919,927	+		IAI47_09080	0.69	-0.5
1,919,927	+		IAI47_09080	0.69	-2.0
1,919,928	-		IAI47_09080	0.70	+0.9
1,919,948	+		IAI47_09080	0.72	-0.3
1,919,948	+		IAI47_09080	0.72	-2.1
1,919,948	+		IAI47_09080	0.72	+2.6
1,919,949	-		IAI47_09080	0.72	-0.8
1,919,949	-		IAI47_09080	0.72	-2.5
1,919,968	+		IAI47_09080	0.74	-0.1
1,919,969	-		IAI47_09080	0.74	+0.3
1,920,051	+		IAI47_09080	0.83	-0.1
1,920,159	+				+1.3
1,920,159	+				-0.1
1,920,160	-				-1.3
1,920,221	+				+0.3
1,920,221	+				-1.1
1,920,221	+				-1.1
1,920,221	+				+0.3
1,920,222	-				-0.5
1,920,222	-				+0.7
1,920,222	-				-0.2
1,920,272	-				-1.1
1,920,272	-				+0.8
1,920,275	+				-0.5
1,920,275	+				-1.6
1,920,275	+				-0.3
1,920,275	+				-0.1
1,920,275	+				+0.8
1,920,276	-				+0.3
1,920,276	-				-0.1
1,920,276	-				-1.8
1,920,289	+				-0.7
1,920,324	-		IAI47_09085	0.11	-0.2
1,920,476	+		IAI47_09085	0.26	-2.3
1,920,477	-		IAI47_09085	0.26	+0.0
1,920,513	-		IAI47_09085	0.29	+1.1
1,920,513	-		IAI47_09085	0.29	-0.7
1,920,513	-		IAI47_09085	0.29	-0.3
1,920,573	+		IAI47_09085	0.35	-0.5
1,920,573	+		IAI47_09085	0.35	+0.3
1,920,573	+		IAI47_09085	0.35	+0.3
1,920,574	-		IAI47_09085	0.35	-0.1
1,920,574	-		IAI47_09085	0.35	-0.0
1,920,574	-		IAI47_09085	0.35	-1.7
1,920,575	+		IAI47_09085	0.35	+0.0
1,920,576	-		IAI47_09085	0.35	-1.6
1,920,576	-		IAI47_09085	0.35	-2.7
1,920,576	-		IAI47_09085	0.35	-0.2
1,920,576	-		IAI47_09085	0.35	-0.4
1,920,608	+		IAI47_09085	0.39	-0.5
1,920,608	+		IAI47_09085	0.39	+1.9
1,920,608	+		IAI47_09085	0.39	-1.0
1,920,608	+		IAI47_09085	0.39	+0.3
1,920,608	+		IAI47_09085	0.39	-0.4
1,920,608	+		IAI47_09085	0.39	+0.5
1,920,608	+		IAI47_09085	0.39	-0.1
1,920,609	-		IAI47_09085	0.39	-0.2
1,920,609	-		IAI47_09085	0.39	-0.7
1,920,609	-		IAI47_09085	0.39	-0.0
1,920,656	-		IAI47_09085	0.43	+1.1
1,920,709	-		IAI47_09085	0.48	+1.3
1,920,803	+		IAI47_09085	0.58	-0.2
1,920,837	-		IAI47_09085	0.61	-0.1
1,920,837	-		IAI47_09085	0.61	-1.1
1,920,837	-		IAI47_09085	0.61	+0.8
1,920,881	+		IAI47_09085	0.65	+1.5
1,920,881	+		IAI47_09085	0.65	-0.7
1,920,882	-		IAI47_09085	0.65	-0.1
1,920,942	+		IAI47_09085	0.71	+0.6
1,920,942	+		IAI47_09085	0.71	-1.5
1,920,942	+		IAI47_09085	0.71	+0.3
1,920,943	-		IAI47_09085	0.71	+1.9
1,920,943	-		IAI47_09085	0.71	-0.8
1,920,943	-		IAI47_09085	0.71	-0.5
1,920,943	-		IAI47_09085	0.71	+0.3
1,920,956	+		IAI47_09085	0.73	+0.5
1,920,956	+		IAI47_09085	0.73	+1.3
1,920,957	-		IAI47_09085	0.73	-0.7
1,920,963	+		IAI47_09085	0.73	-0.1
1,920,987	+		IAI47_09085	0.76	+0.7
1,920,987	+		IAI47_09085	0.76	-0.2
1,920,987	+		IAI47_09085	0.76	-1.6
1,920,988	-		IAI47_09085	0.76	-1.2
1,921,005	+		IAI47_09085	0.78	+0.8
1,921,005	+		IAI47_09085	0.78	-0.1
1,921,022	+		IAI47_09085	0.79	-0.1
1,921,148	+				-0.1
1,921,148	+				+0.6