Strain Fitness in Pantoea sp. MT58 around IAI47_07875

Experiment: Ying_sugar7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 3
1,669,808	+		IAI47_07870	0.43	+1.6
1,669,808	+		IAI47_07870	0.43	-0.0
1,669,808	+		IAI47_07870	0.43	-1.3
1,669,836	+		IAI47_07870	0.45	+0.3
1,669,836	+		IAI47_07870	0.45	-0.5
1,669,836	+		IAI47_07870	0.45	-1.2
1,669,837	-		IAI47_07870	0.45	+0.1
1,669,837	-		IAI47_07870	0.45	-0.7
1,669,837	-		IAI47_07870	0.45	+0.3
1,669,837	-		IAI47_07870	0.45	-1.5
1,669,849	+		IAI47_07870	0.46	+1.1
1,669,849	+		IAI47_07870	0.46	-1.6
1,669,849	+		IAI47_07870	0.46	-2.7
1,669,850	-		IAI47_07870	0.46	-0.7
1,669,850	-		IAI47_07870	0.46	-0.3
1,669,851	+		IAI47_07870	0.46	+0.8
1,669,851	+		IAI47_07870	0.46	-0.1
1,669,852	-		IAI47_07870	0.46	-0.7
1,669,852	-		IAI47_07870	0.46	+2.3
1,669,873	+		IAI47_07870	0.48	-1.0
1,669,874	-		IAI47_07870	0.48	-0.5
1,669,874	-		IAI47_07870	0.48	-2.3
1,669,924	+		IAI47_07870	0.51	+0.3
1,669,925	-		IAI47_07870	0.51	-0.1
1,669,964	+		IAI47_07870	0.54	-0.4
1,669,970	+		IAI47_07870	0.55	-0.6
1,669,970	+		IAI47_07870	0.55	-1.4
1,669,970	+		IAI47_07870	0.55	-0.4
1,669,970	+		IAI47_07870	0.55	+0.3
1,669,970	+		IAI47_07870	0.55	-0.2
1,669,970	+		IAI47_07870	0.55	-1.8
1,669,970	+		IAI47_07870	0.55	+0.4
1,669,970	+		IAI47_07870	0.55	-1.3
1,669,970	+		IAI47_07870	0.55	+0.1
1,669,970	+		IAI47_07870	0.55	-2.3
1,669,970	+		IAI47_07870	0.55	+0.3
1,669,970	+		IAI47_07870	0.55	+0.7
1,669,970	+		IAI47_07870	0.55	+0.9
1,669,971	-		IAI47_07870	0.55	-1.0
1,669,971	-		IAI47_07870	0.55	+0.3
1,669,971	-		IAI47_07870	0.55	+1.2
1,669,971	-		IAI47_07870	0.55	-1.2
1,669,971	-		IAI47_07870	0.55	+0.4
1,669,971	-		IAI47_07870	0.55	+0.3
1,669,971	-		IAI47_07870	0.55	-1.6
1,669,971	-		IAI47_07870	0.55	+0.2
1,669,971	-		IAI47_07870	0.55	-0.7
1,670,139	+		IAI47_07870	0.67	-1.2
1,670,139	+		IAI47_07870	0.67	+0.8
1,670,139	+		IAI47_07870	0.67	+2.1
1,670,139	+		IAI47_07870	0.67	+0.8
1,670,140	-		IAI47_07870	0.67	-0.5
1,670,140	-		IAI47_07870	0.67	-2.2
1,670,142	+		IAI47_07870	0.67	+1.4
1,670,249	+		IAI47_07870	0.74	+1.1
1,670,264	+		IAI47_07870	0.75	+1.1
1,670,278	+		IAI47_07870	0.76	+2.1
1,670,278	+		IAI47_07870	0.76	+1.9
1,670,279	-		IAI47_07870	0.76	-0.3
1,670,279	-		IAI47_07870	0.76	+0.7
1,670,279	-		IAI47_07870	0.76	+0.8
1,670,279	-		IAI47_07870	0.76	-1.2
1,670,279	-		IAI47_07870	0.76	-1.0
1,670,279	-		IAI47_07870	0.76	-1.7
1,670,279	-		IAI47_07870	0.76	+1.3
1,670,280	+		IAI47_07870	0.77	+1.3
1,670,300	+		IAI47_07870	0.78	+2.8
1,670,300	+		IAI47_07870	0.78	+0.9
1,670,301	-		IAI47_07870	0.78	+1.3
1,670,306	+		IAI47_07870	0.78	+1.0
1,670,340	+		IAI47_07870	0.81	+0.1
1,670,340	+		IAI47_07870	0.81	-1.6
1,670,341	-		IAI47_07870	0.81	+0.9
1,670,349	-		IAI47_07870	0.81	+0.2
1,670,382	+		IAI47_07870	0.84	-0.1
1,670,404	+		IAI47_07870	0.85	-1.7
1,670,404	+		IAI47_07870	0.85	-0.0
1,670,413	+		IAI47_07870	0.86	+0.6
1,670,413	+		IAI47_07870	0.86	-1.0
1,670,413	+		IAI47_07870	0.86	-1.7
1,670,413	+		IAI47_07870	0.86	+0.7
1,670,413	+		IAI47_07870	0.86	-0.7
1,670,413	+		IAI47_07870	0.86	-0.7
1,670,413	+		IAI47_07870	0.86	+0.3
1,670,413	+		IAI47_07870	0.86	+1.3
1,670,413	+		IAI47_07870	0.86	+0.3
1,670,413	+		IAI47_07870	0.86	+1.0
1,670,413	+		IAI47_07870	0.86	+0.9
1,670,413	+		IAI47_07870	0.86	-1.0
1,670,413	+		IAI47_07870	0.86	-1.7
1,670,413	+		IAI47_07870	0.86	-1.3
1,670,413	+		IAI47_07870	0.86	-0.4
1,670,413	+		IAI47_07870	0.86	+1.3
1,670,413	+		IAI47_07870	0.86	+0.4
1,670,413	+		IAI47_07870	0.86	+1.7
1,670,413	+		IAI47_07870	0.86	+1.4
1,670,413	+		IAI47_07870	0.86	-0.0
1,670,413	+		IAI47_07870	0.86	+1.0
1,670,413	+		IAI47_07870	0.86	-1.1
1,670,413	+		IAI47_07870	0.86	-1.7
1,670,413	+		IAI47_07870	0.86	-1.1
1,670,414	-		IAI47_07870	0.86	-0.5
1,670,414	-		IAI47_07870	0.86	+0.0
1,670,414	-		IAI47_07870	0.86	+1.3
1,670,414	-		IAI47_07870	0.86	-0.2
1,670,414	-		IAI47_07870	0.86	+0.4
1,670,414	-		IAI47_07870	0.86	-0.4
1,670,414	-		IAI47_07870	0.86	+0.3
1,670,414	-		IAI47_07870	0.86	-0.2
1,670,414	-		IAI47_07870	0.86	+1.1
1,670,414	-		IAI47_07870	0.86	-1.7
1,670,414	-		IAI47_07870	0.86	+1.2
1,670,414	-		IAI47_07870	0.86	+0.3
1,670,414	-		IAI47_07870	0.86	-3.7
1,670,414	-		IAI47_07870	0.86	+0.7
1,670,414	-		IAI47_07870	0.86	+0.6
1,670,414	-		IAI47_07870	0.86	+0.8
1,670,414	-		IAI47_07870	0.86	+0.6
1,670,414	-		IAI47_07870	0.86	-0.2
1,670,414	-		IAI47_07870	0.86	-1.2
1,670,414	-		IAI47_07870	0.86	+0.8
1,670,414	-		IAI47_07870	0.86	+0.0
1,670,414	-		IAI47_07870	0.86	-0.4
1,670,414	-		IAI47_07870	0.86	+1.8
1,670,559	+				-1.4
1,670,565	+				-1.0
1,670,565	+				+0.6
1,670,566	-				-0.3
1,670,566	-				+0.4
1,670,620	+				+0.2
1,670,620	+				+1.3
1,670,620	+				+1.3
1,670,620	+				+0.1
1,670,621	-				-0.2
1,670,649	+				-0.8
1,670,649	+				-0.6
1,670,650	-				+0.3
1,670,675	-				+0.4
1,670,756	+				+0.8
1,670,756	+				-0.0
1,670,757	-				-0.7
1,670,757	-				-0.0
1,670,757	-				+2.6
1,670,785	+				-1.3
1,670,785	+				+0.1
1,670,786	-				+1.1
1,670,786	-				+1.8
1,670,786	-				+0.5
1,670,789	+				-1.3
1,670,789	+				+0.2
1,670,789	+				+0.5
1,670,789	+				+0.3
1,670,789	+				+0.3
1,670,789	+				-0.7
1,670,789	+				-1.3
1,670,790	-				+1.6
1,670,790	-				-0.3
1,670,790	-				-2.6
1,670,790	-				-0.1
1,670,790	-				-2.1
1,670,790	-				-1.1
1,670,790	-				+1.6
1,670,803	+				+0.8
1,670,804	-				+0.8
1,670,804	-				+0.3
1,670,804	-				+1.2
1,670,804	-				-0.9
1,670,804	-				+3.4
1,670,848	+				+0.1
1,670,848	+				-0.5
1,670,848	+				-0.2
1,670,848	+				+0.8
1,670,879	+				+0.5
1,670,879	+				+2.3
1,670,879	+				+1.0
1,670,879	+				+0.3
1,670,879	+				-0.8
1,670,880	-				-1.7
1,670,880	-				-1.7
1,670,880	-				+0.5
1,670,960	-		IAI47_07875	0.14	-2.3
1,671,007	+		IAI47_07875	0.18	-1.3
1,671,007	+		IAI47_07875	0.18	+0.3
1,671,007	+		IAI47_07875	0.18	-0.5
1,671,007	+		IAI47_07875	0.18	+0.1
1,671,008	-		IAI47_07875	0.18	+0.3
1,671,008	-		IAI47_07875	0.18	+0.7
1,671,008	-		IAI47_07875	0.18	-1.2
1,671,008	-		IAI47_07875	0.18	+0.8
1,671,008	-		IAI47_07875	0.18	+1.8
1,671,017	+		IAI47_07875	0.19	-0.7
1,671,017	+		IAI47_07875	0.19	+0.3
1,671,017	+		IAI47_07875	0.19	+1.3
1,671,018	-		IAI47_07875	0.19	-1.5
1,671,042	-		IAI47_07875	0.21	+0.3
1,671,042	-		IAI47_07875	0.21	-2.7
1,671,131	-		IAI47_07875	0.29	-0.1
1,671,139	+		IAI47_07875	0.30	+0.6
1,671,139	+		IAI47_07875	0.30	+0.7
1,671,140	-		IAI47_07875	0.30	-0.3
1,671,170	+		IAI47_07875	0.33	-0.9
1,671,170	+		IAI47_07875	0.33	+1.0
1,671,170	+		IAI47_07875	0.33	+0.0
1,671,170	+		IAI47_07875	0.33	+1.6
1,671,171	-		IAI47_07875	0.33	-1.1
1,671,171	-		IAI47_07875	0.33	-0.1
1,671,171	-		IAI47_07875	0.33	+0.6
1,671,271	-		IAI47_07875	0.42	-1.5
1,671,271	-		IAI47_07875	0.42	-0.7
1,671,274	+		IAI47_07875	0.42	-2.3
1,671,274	+		IAI47_07875	0.42	-1.3
1,671,274	+		IAI47_07875	0.42	+1.3
1,671,287	-		IAI47_07875	0.43	-0.3
1,671,287	-		IAI47_07875	0.43	-1.2
1,671,299	+		IAI47_07875	0.44	-0.7
1,671,299	+		IAI47_07875	0.44	+0.8
1,671,300	-		IAI47_07875	0.45	-0.7
1,671,300	-		IAI47_07875	0.45	+0.3
1,671,300	-		IAI47_07875	0.45	-0.9
1,671,300	-		IAI47_07875	0.45	-0.5
1,671,300	-		IAI47_07875	0.45	+0.5
1,671,335	+		IAI47_07875	0.48	-1.1
1,671,335	+		IAI47_07875	0.48	+1.3
1,671,335	+		IAI47_07875	0.48	+0.1
1,671,335	+		IAI47_07875	0.48	-0.2
1,671,336	-		IAI47_07875	0.48	-0.4
1,671,336	-		IAI47_07875	0.48	-1.7
1,671,336	-		IAI47_07875	0.48	-0.3
1,671,336	-		IAI47_07875	0.48	+1.7
1,671,337	+		IAI47_07875	0.48	-1.3
1,671,337	+		IAI47_07875	0.48	-0.2
1,671,337	+		IAI47_07875	0.48	-1.1
1,671,337	+		IAI47_07875	0.48	+1.8
1,671,337	+		IAI47_07875	0.48	-0.1
1,671,337	+		IAI47_07875	0.48	-1.3
1,671,337	+		IAI47_07875	0.48	+1.3
1,671,338	-		IAI47_07875	0.48	+0.9
1,671,338	-		IAI47_07875	0.48	-0.5
1,671,338	-		IAI47_07875	0.48	-0.3
1,671,338	-		IAI47_07875	0.48	-0.3
1,671,338	-		IAI47_07875	0.48	-1.9
1,671,433	+		IAI47_07875	0.57	-1.9
1,671,446	+		IAI47_07875	0.58	-0.0
1,671,446	+		IAI47_07875	0.58	+1.8
1,671,548	+		IAI47_07875	0.67	-0.3
1,671,548	+		IAI47_07875	0.67	+1.0
1,671,548	+		IAI47_07875	0.67	-0.8
1,671,548	+		IAI47_07875	0.67	-0.1
1,671,548	+		IAI47_07875	0.67	+1.7
1,671,549	-		IAI47_07875	0.67	+0.5
1,671,549	-		IAI47_07875	0.67	+1.7
1,671,549	-		IAI47_07875	0.67	+0.8
1,671,550	+		IAI47_07875	0.67	+0.4
1,671,550	+		IAI47_07875	0.67	+0.1
1,671,646	+		IAI47_07875	0.76	+3.4
1,671,646	+		IAI47_07875	0.76	+0.9
1,671,647	-		IAI47_07875	0.76	-0.3
1,671,647	-		IAI47_07875	0.76	-2.3
1,671,647	-		IAI47_07875	0.76	-1.3
1,671,697	+		IAI47_07875	0.80	+0.9
1,671,697	+		IAI47_07875	0.80	-1.6
1,671,697	+		IAI47_07875	0.80	+0.9
1,671,714	+		IAI47_07875	0.82	-0.4
1,671,715	-		IAI47_07875	0.82	-0.2
1,671,757	+		IAI47_07875	0.86	+0.8
1,671,757	+		IAI47_07875	0.86	+1.8
1,671,758	-		IAI47_07875	0.86	-0.3
1,671,758	-		IAI47_07875	0.86	-0.9
1,671,759	+		IAI47_07875	0.86	-1.1
1,671,759	+		IAI47_07875	0.86	-0.1
1,671,759	+		IAI47_07875	0.86	-0.6
1,671,759	+		IAI47_07875	0.86	-0.6
1,671,759	+		IAI47_07875	0.86	-0.7
1,671,759	+		IAI47_07875	0.86	-0.1
1,671,759	+		IAI47_07875	0.86	-0.8
1,671,759	+		IAI47_07875	0.86	+0.5
1,671,759	+		IAI47_07875	0.86	-1.6
1,671,759	+		IAI47_07875	0.86	-0.0
1,671,759	+		IAI47_07875	0.86	-0.4
1,671,759	+		IAI47_07875	0.86	+1.1
1,671,759	+		IAI47_07875	0.86	+0.3
1,671,759	+		IAI47_07875	0.86	-0.4
1,671,759	+		IAI47_07875	0.86	+0.7
1,671,759	+		IAI47_07875	0.86	-0.7
1,671,760	-		IAI47_07875	0.86	+0.7
1,671,760	-		IAI47_07875	0.86	+0.3
1,671,760	-		IAI47_07875	0.86	-0.1
1,671,760	-		IAI47_07875	0.86	-0.6
1,671,760	-		IAI47_07875	0.86	-0.7
1,671,760	-		IAI47_07875	0.86	+0.4
1,671,760	-		IAI47_07875	0.86	+2.8
1,671,760	-		IAI47_07875	0.86	+0.3
1,671,760	-		IAI47_07875	0.86	-0.3
1,671,760	-		IAI47_07875	0.86	-0.6
1,671,760	-		IAI47_07875	0.86	-0.2
1,671,760	-		IAI47_07875	0.86	-0.3
1,671,760	-		IAI47_07875	0.86	+1.5
1,671,760	-		IAI47_07875	0.86	-0.0
1,671,760	-		IAI47_07875	0.86	+0.7
1,671,760	-		IAI47_07875	0.86	+2.3
1,671,760	-		IAI47_07875	0.86	-2.1
1,671,760	-		IAI47_07875	0.86	-0.1
1,671,760	-		IAI47_07875	0.86	-0.5
1,671,760	-		IAI47_07875	0.86	-0.3
1,671,760	-		IAI47_07875	0.86	-0.5
1,671,763	+		IAI47_07875	0.86	-1.3
1,671,763	+		IAI47_07875	0.86	+1.0
1,671,763	+		IAI47_07875	0.86	-1.3
1,671,763	+		IAI47_07875	0.86	-0.1
1,671,763	+		IAI47_07875	0.86	+0.9
1,671,764	-		IAI47_07875	0.86	+0.3
1,671,764	-		IAI47_07875	0.86	+1.0
1,671,824	+				+0.7
1,671,824	+				+0.7
1,671,824	+				+0.3
1,671,824	+				+0.1
1,671,824	+				+1.7
1,671,824	+				-1.3
1,671,824	+				-0.1
1,671,824	+				-0.3
1,671,825	-				-1.6
1,671,825	-				+1.7
1,671,825	-				+0.3
1,671,825	-				-2.0
1,671,825	-				-0.8
1,671,825	-				-1.2
1,671,825	-				+0.3
1,671,825	-				-0.3
1,671,825	-				+0.5
1,671,825	-				-3.2
1,671,826	-				+0.3
1,671,880	+				-0.7
1,671,880	+				+0.3
1,671,907	+				+1.4
1,671,908	-				-2.8
1,671,914	+				+0.7
1,671,914	+				+1.4
1,671,915	-				+0.8
1,671,915	-				-2.1
1,671,915	-				+1.8
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