Strain Fitness in Pantoea sp. MT58 around IAI47_07070

Experiment: Ying_sugar7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 3
1,491,772	+		IAI47_07060	0.62	-3.9
1,491,772	+		IAI47_07060	0.62	-5.1
1,491,772	+		IAI47_07060	0.62	-2.7
1,491,773	-		IAI47_07060	0.62	-2.7
1,491,773	-		IAI47_07060	0.62	-3.7
1,491,779	+		IAI47_07060	0.63	-2.5
1,491,779	+		IAI47_07060	0.63	-3.2
1,491,779	+		IAI47_07060	0.63	-2.3
1,491,780	-		IAI47_07060	0.63	-4.5
1,491,780	-		IAI47_07060	0.63	-3.9
1,491,856	+		IAI47_07060	0.76	+0.3
1,491,856	+		IAI47_07060	0.76	-2.9
1,491,856	+		IAI47_07060	0.76	-2.7
1,491,856	+		IAI47_07060	0.76	-2.0
1,491,856	+		IAI47_07060	0.76	-1.7
1,491,856	+		IAI47_07060	0.76	-2.5
1,491,856	+		IAI47_07060	0.76	-0.7
1,491,857	-		IAI47_07060	0.76	-1.7
1,491,857	-		IAI47_07060	0.76	-2.9
1,491,857	-		IAI47_07060	0.76	-4.1
1,491,857	-		IAI47_07060	0.76	-2.0
1,491,857	-		IAI47_07060	0.76	-3.4
1,491,857	-		IAI47_07060	0.76	-1.3
1,491,857	-		IAI47_07060	0.76	-4.2
1,491,897	+		IAI47_07060	0.83	-3.2
1,491,897	+		IAI47_07060	0.83	-3.0
1,491,897	+		IAI47_07060	0.83	-4.0
1,491,898	-		IAI47_07060	0.83	-1.7
1,491,898	-		IAI47_07060	0.83	-2.0
1,491,898	-		IAI47_07060	0.83	-4.4
1,491,898	-		IAI47_07060	0.83	-2.0
1,491,928	+		IAI47_07060	0.88	-2.5
1,491,928	+		IAI47_07060	0.88	-1.3
1,491,929	-		IAI47_07060	0.88	-4.2
1,492,053	+				-4.7
1,492,053	+				-3.8
1,492,054	-				-1.7
1,492,056	+				-2.0
1,492,056	+				-4.3
1,492,056	+				+0.3
1,492,056	+				-4.3
1,492,057	-				-0.7
1,492,057	-				-1.3
1,492,057	-				-1.7
1,492,059	+				-3.8
1,492,060	-				-0.7
1,492,060	-				-3.4
1,492,060	-				-3.0
1,492,060	-				-1.7
1,492,068	+				-4.2
1,492,069	-				-2.7
1,492,075	+		IAI47_07065	0.10	-2.3
1,492,075	+		IAI47_07065	0.10	-3.8
1,492,075	+		IAI47_07065	0.10	-2.5
1,492,211	+		IAI47_07065	0.28	-3.0
1,492,211	+		IAI47_07065	0.28	+0.3
1,492,212	-		IAI47_07065	0.28	-5.1
1,492,218	+		IAI47_07065	0.28	-2.7
1,492,340	+		IAI47_07065	0.44	-4.6
1,492,341	-		IAI47_07065	0.44	-2.0
1,492,355	+		IAI47_07065	0.46	-1.3
1,492,355	+		IAI47_07065	0.46	-2.3
1,492,355	+		IAI47_07065	0.46	-1.7
1,492,355	+		IAI47_07065	0.46	-2.0
1,492,355	+		IAI47_07065	0.46	-2.5
1,492,356	-		IAI47_07065	0.46	-2.7
1,492,356	-		IAI47_07065	0.46	-5.4
1,492,359	+		IAI47_07065	0.47	-0.7
1,492,359	+		IAI47_07065	0.47	-2.3
1,492,360	-		IAI47_07065	0.47	-3.6
1,492,360	-		IAI47_07065	0.47	-2.9
1,492,383	+		IAI47_07065	0.50	-3.2
1,492,383	+		IAI47_07065	0.50	-3.6
1,492,383	+		IAI47_07065	0.50	-2.0
1,492,383	+		IAI47_07065	0.50	-4.5
1,492,384	-		IAI47_07065	0.50	-2.3
1,492,401	+		IAI47_07065	0.52	-1.7
1,492,401	+		IAI47_07065	0.52	-3.7
1,492,401	+		IAI47_07065	0.52	-1.3
1,492,401	+		IAI47_07065	0.52	-2.7
1,492,402	-		IAI47_07065	0.52	-4.5
1,492,402	-		IAI47_07065	0.52	-2.5
1,492,402	-		IAI47_07065	0.52	-3.0
1,492,480	-		IAI47_07065	0.62	-0.7
1,492,525	-		IAI47_07065	0.68	-2.3
1,492,525	-		IAI47_07065	0.68	-2.7
1,492,537	+		IAI47_07065	0.69	-2.3
1,492,538	-		IAI47_07065	0.70	+0.3
1,492,538	-		IAI47_07065	0.70	-3.0
1,492,551	+		IAI47_07065	0.71	-1.7
1,492,551	+		IAI47_07065	0.71	-2.9
1,492,551	+		IAI47_07065	0.71	-2.5
1,492,552	-		IAI47_07065	0.71	-2.9
1,492,552	-		IAI47_07065	0.71	-1.3
1,492,625	+		IAI47_07065	0.81	+0.3
1,492,625	+		IAI47_07065	0.81	-0.7
1,492,625	+		IAI47_07065	0.81	-2.7
1,492,625	+		IAI47_07065	0.81	-3.0
1,492,625	+		IAI47_07065	0.81	-2.9
1,492,625	+		IAI47_07065	0.81	-1.3
1,492,626	-		IAI47_07065	0.81	-3.5
1,492,626	-		IAI47_07065	0.81	-2.5
1,492,626	-		IAI47_07065	0.81	-2.7
1,492,626	-		IAI47_07065	0.81	-3.0
1,492,626	-		IAI47_07065	0.81	-3.2
1,492,626	-		IAI47_07065	0.81	-2.9
1,492,626	-		IAI47_07065	0.81	-1.3
1,492,658	+		IAI47_07065	0.85	-0.7
1,492,659	-		IAI47_07065	0.85	-1.3
1,492,711	+				-2.9
1,492,712	-				-3.5
1,492,712	-				-3.6
1,492,738	+				-0.7
1,492,738	+				-0.7
1,492,738	+				-3.2
1,492,738	+				-2.7
1,492,739	-				-2.5
1,492,739	-				-1.7
1,492,739	-				-2.3
1,492,739	-				-3.4
1,492,739	-				-2.9
1,492,739	-				-1.3
1,492,799	+				-1.3
1,492,800	-				-3.9
1,492,827	+				-3.0
1,492,827	+				-2.9
1,492,827	+				-0.7
1,492,845	-		IAI47_07070	0.12	-3.2
1,492,933	+		IAI47_07070	0.24	-3.6
1,492,976	+		IAI47_07070	0.30	-3.0
1,492,976	+		IAI47_07070	0.30	-1.7
1,492,977	-		IAI47_07070	0.30	-3.5
1,493,022	-		IAI47_07070	0.36	-3.7
1,493,109	+		IAI47_07070	0.48	-2.3
1,493,109	+		IAI47_07070	0.48	-2.3
1,493,109	+		IAI47_07070	0.48	-2.3
1,493,109	+		IAI47_07070	0.48	-1.3
1,493,109	+		IAI47_07070	0.48	+0.3
1,493,109	+		IAI47_07070	0.48	-3.0
1,493,110	-		IAI47_07070	0.48	-3.2
1,493,110	-		IAI47_07070	0.48	-2.3
1,493,158	-		IAI47_07070	0.55	-3.2
1,493,158	-		IAI47_07070	0.55	-1.7
1,493,340	+		IAI47_07070	0.79	-2.9
1,493,341	-		IAI47_07070	0.79	-3.8
1,493,358	+		IAI47_07070	0.82	-1.7
1,493,358	+		IAI47_07070	0.82	-2.9
1,493,359	-		IAI47_07070	0.82	-1.7
1,493,359	-		IAI47_07070	0.82	-3.4
1,493,359	-		IAI47_07070	0.82	-3.2
1,493,359	-		IAI47_07070	0.82	-3.2
1,493,359	-		IAI47_07070	0.82	-2.3
1,493,376	+		IAI47_07070	0.84	-2.0
1,493,376	+		IAI47_07070	0.84	-1.3
1,493,377	-		IAI47_07070	0.84	-3.5
1,493,380	+		IAI47_07070	0.85	-2.7
1,493,381	-		IAI47_07070	0.85	-3.7
1,493,431	+				-3.2
1,493,469	+				-2.5
1,493,469	+				-2.7
1,493,470	-				-3.5
1,493,486	+				-2.9
1,493,493	+				-2.3
1,493,493	+				-2.3
1,493,493	+				-1.7
1,493,493	+				-3.4
1,493,493	+				-2.0
1,493,493	+				-1.3
1,493,493	+				-4.7
1,493,493	+				-2.9
1,493,493	+				-3.2
1,493,493	+				-2.3
1,493,494	-				-2.5
1,493,494	-				-2.3
1,493,494	-				-2.5
1,493,494	-				-1.3
1,493,494	-				-3.2
1,493,494	-				-2.7
1,493,494	-				-1.7
1,493,494	-				-2.9
1,493,494	-				-1.3
1,493,494	-				-1.7
1,493,494	-				-3.0
1,493,494	-				-2.9
1,493,494	-				-2.9
1,493,494	-				-1.7
1,493,494	-				-2.7
1,493,494	-				-1.7
1,493,573	-		IAI47_07075	0.14	-2.5
1,493,573	-		IAI47_07075	0.14	-3.9
1,493,573	-		IAI47_07075	0.14	-0.7
1,493,607	+		IAI47_07075	0.19	-2.5
1,493,607	+		IAI47_07075	0.19	-3.5
1,493,607	+		IAI47_07075	0.19	-3.2
1,493,608	-		IAI47_07075	0.20	-3.2
1,493,649	+		IAI47_07075	0.27	-3.3
1,493,649	+		IAI47_07075	0.27	-0.7
1,493,649	+		IAI47_07075	0.27	-2.3
1,493,649	+		IAI47_07075	0.27	-3.7
1,493,649	+		IAI47_07075	0.27	-3.9
1,493,649	+		IAI47_07075	0.27	-2.7
1,493,649	+		IAI47_07075	0.27	-3.3
1,493,649	+		IAI47_07075	0.27	-1.7
1,493,649	+		IAI47_07075	0.27	-2.3
1,493,650	-		IAI47_07075	0.27	-3.2
1,493,650	-		IAI47_07075	0.27	-1.3
1,493,650	-		IAI47_07075	0.27	-1.3
1,493,650	-		IAI47_07075	0.27	-3.0
1,493,650	-		IAI47_07075	0.27	-1.7
1,493,650	-		IAI47_07075	0.27	-2.9
1,493,650	-		IAI47_07075	0.27	-1.7
1,493,664	+		IAI47_07075	0.29	+0.3
1,493,664	+		IAI47_07075	0.29	-1.7
1,493,665	-		IAI47_07075	0.29	-2.5
1,493,665	-		IAI47_07075	0.29	-2.3
1,493,670	+		IAI47_07075	0.30	-0.7
1,493,671	-		IAI47_07075	0.30	+0.3
1,493,671	-		IAI47_07075	0.30	-0.7
1,493,788	+		IAI47_07075	0.50	-3.2
1,493,837	+		IAI47_07075	0.58	-2.0
1,493,838	-		IAI47_07075	0.59	-2.5
1,493,838	-		IAI47_07075	0.59	-1.3
1,493,838	-		IAI47_07075	0.59	-2.3
1,493,838	-		IAI47_07075	0.59	-2.3
1,493,845	+		IAI47_07075	0.60	+0.3
1,493,943	-		IAI47_07075	0.76	-2.7
1,493,943	-		IAI47_07075	0.76	-5.1
1,494,007	+		IAI47_07075	0.87	-4.7
1,494,007	+		IAI47_07075	0.87	-3.9
1,494,008	-		IAI47_07075	0.87	-3.6
1,494,009	+		IAI47_07075	0.87	-1.7
1,494,009	+		IAI47_07075	0.87	-2.9
1,494,010	-		IAI47_07075	0.88	-2.3
1,494,010	-		IAI47_07075	0.88	-2.3
1,494,111	+				-2.9
1,494,111	+				-0.7
1,494,112	-				-3.7
1,494,114	+				-2.9
1,494,114	+				-3.5
1,494,115	-				-2.7
1,494,115	-				-3.5
1,494,159	+				-1.7
1,494,230	+		IAI47_07080	0.14	-2.3
1,494,231	-		IAI47_07080	0.14	-2.0
1,494,290	+		IAI47_07080	0.19	-0.7
1,494,290	+		IAI47_07080	0.19	-2.5
1,494,290	+		IAI47_07080	0.19	-2.0
1,494,290	+		IAI47_07080	0.19	-4.5
1,494,291	-		IAI47_07080	0.20	-3.4
1,494,334	-		IAI47_07080	0.24	-4.6
1,494,334	-		IAI47_07080	0.24	-2.3
1,494,334	-		IAI47_07080	0.24	-1.7
1,494,447	+		IAI47_07080	0.34	-1.7
1,494,474	+		IAI47_07080	0.37	-5.6
1,494,474	+		IAI47_07080	0.37	-1.3
1,494,474	+		IAI47_07080	0.37	-2.7
1,494,474	+		IAI47_07080	0.37	-3.0
1,494,475	-		IAI47_07080	0.37	-2.3
1,494,476	+		IAI47_07080	0.37	-3.3
1,494,476	+		IAI47_07080	0.37	-2.5
1,494,476	+		IAI47_07080	0.37	-2.0
1,494,476	+		IAI47_07080	0.37	-3.7
1,494,477	-		IAI47_07080	0.37	-2.3
1,494,477	-		IAI47_07080	0.37	-5.4
1,494,477	-		IAI47_07080	0.37	-3.4
1,494,477	-		IAI47_07080	0.37	-2.9
1,494,477	-		IAI47_07080	0.37	-4.2