Strain Fitness in Pantoea sp. MT58 around IAI47_06325

Experiment: Ying_sugar7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 3
1,285,107	+		IAI47_06320	0.57	+0.1
1,285,108	-		IAI47_06320	0.57	-0.5
1,285,108	-		IAI47_06320	0.57	+0.3
1,285,331	-		IAI47_06320	0.68	+1.3
1,285,331	-		IAI47_06320	0.68	+0.3
1,285,481	-		IAI47_06320	0.75	-0.7
1,285,524	-		IAI47_06320	0.77	-0.7
1,285,524	-		IAI47_06320	0.77	+1.3
1,285,524	-		IAI47_06320	0.77	+0.3
1,285,535	-		IAI47_06320	0.77	+0.6
1,285,662	+		IAI47_06320	0.83	+0.3
1,285,855	+				-1.7
1,285,855	+				-0.6
1,286,014	+				-0.1
1,286,014	+				+0.8
1,286,015	-				-1.1
1,286,015	-				-0.3
1,286,020	+				+2.8
1,286,045	+				-0.6
1,286,045	+				+1.2
1,286,102	+				+2.9
1,286,103	-				-0.9
1,286,185	-				+0.3
1,286,355	-		IAI47_06325	0.21	+0.3
1,286,367	-		IAI47_06325	0.22	+1.9
1,286,367	-		IAI47_06325	0.22	-1.5
1,286,426	+		IAI47_06325	0.27	-1.7
1,286,426	+		IAI47_06325	0.27	+2.3
1,286,427	-		IAI47_06325	0.27	-2.5
1,286,427	-		IAI47_06325	0.27	-1.7
1,286,430	+		IAI47_06325	0.27	-1.3
1,286,473	+		IAI47_06325	0.31	+0.3
1,286,474	-		IAI47_06325	0.31	+0.8
1,286,503	-		IAI47_06325	0.33	+0.3
1,286,503	-		IAI47_06325	0.33	+0.2
1,286,523	+		IAI47_06325	0.35	-0.1
1,286,552	-		IAI47_06325	0.37	+0.7
1,286,581	-		IAI47_06325	0.40	-1.5
1,286,741	+		IAI47_06325	0.53	+1.3
1,286,741	+		IAI47_06325	0.53	+0.9
1,286,741	+		IAI47_06325	0.53	+2.3
1,286,741	+		IAI47_06325	0.53	-1.7
1,286,741	+		IAI47_06325	0.53	+1.9
1,286,741	+		IAI47_06325	0.53	-0.7
1,286,742	-		IAI47_06325	0.53	-1.7
1,286,742	-		IAI47_06325	0.53	+0.3
1,286,742	-		IAI47_06325	0.53	-0.1
1,286,754	+		IAI47_06325	0.54	+0.3
1,286,754	+		IAI47_06325	0.54	-2.7
1,286,813	+		IAI47_06325	0.59	-0.7
1,286,819	+		IAI47_06325	0.60	-1.3
1,286,819	+		IAI47_06325	0.60	-1.0
1,286,819	+		IAI47_06325	0.60	-0.7
1,286,819	+		IAI47_06325	0.60	-0.7
1,286,819	+		IAI47_06325	0.60	+1.6
1,286,820	-		IAI47_06325	0.60	-0.6
1,286,820	-		IAI47_06325	0.60	-2.9
1,286,820	-		IAI47_06325	0.60	+0.3
1,286,820	-		IAI47_06325	0.60	-1.7
1,286,861	-		IAI47_06325	0.63	+1.9
1,286,913	+		IAI47_06325	0.67	+1.1
1,287,030	+		IAI47_06325	0.77	-1.3
1,287,031	-		IAI47_06325	0.77	-1.3
1,287,032	-		IAI47_06325	0.77	-0.0
1,287,090	+		IAI47_06325	0.82	-2.0
1,287,256	-				-1.3
1,287,289	+				-1.4
1,287,290	-				+1.3
1,287,294	+				+0.5
1,287,294	+				-1.3
1,287,295	-				-1.3
1,287,295	-				+1.9
1,287,295	-				+0.6
1,287,309	+				+1.3
1,287,310	-				+1.3
1,287,314	-				+0.7
1,287,335	+				+0.8
1,287,336	-				+0.3
1,287,351	-				+0.8
1,287,351	-				-0.7
1,287,376	-				+1.8
1,287,381	-				+0.8
1,287,523	-				+2.6
1,287,523	-				+0.1
1,287,523	-				-0.3
1,287,523	-				-3.1
1,287,523	-				-2.9
1,287,538	+				-0.0
1,287,554	+				+1.7
1,287,698	+		IAI47_06330	0.13	+0.2
1,287,698	+		IAI47_06330	0.13	-0.7
1,287,698	+		IAI47_06330	0.13	-3.1
1,287,698	+		IAI47_06330	0.13	-1.7
1,287,698	+		IAI47_06330	0.13	+0.1
1,287,698	+		IAI47_06330	0.13	+0.7
1,287,698	+		IAI47_06330	0.13	-2.2
1,287,698	+		IAI47_06330	0.13	+0.2
1,287,698	+		IAI47_06330	0.13	+1.0
1,287,698	+		IAI47_06330	0.13	-0.0
1,287,698	+		IAI47_06330	0.13	-0.5
1,287,698	+		IAI47_06330	0.13	-0.2
1,287,698	+		IAI47_06330	0.13	+1.1
1,287,698	+		IAI47_06330	0.13	+2.6
1,287,699	-		IAI47_06330	0.13	+1.3
1,287,699	-		IAI47_06330	0.13	-1.0
1,287,699	-		IAI47_06330	0.13	-0.7
1,287,699	-		IAI47_06330	0.13	-0.3
1,287,699	-		IAI47_06330	0.13	+1.1
1,287,699	-		IAI47_06330	0.13	-1.3
1,287,699	-		IAI47_06330	0.13	-0.8
1,287,699	-		IAI47_06330	0.13	+0.1
1,287,699	-		IAI47_06330	0.13	+0.1
1,287,699	-		IAI47_06330	0.13	+0.3
1,287,699	-		IAI47_06330	0.13	+1.1
1,287,699	-		IAI47_06330	0.13	-0.4
1,287,699	-		IAI47_06330	0.13	+1.6
1,287,699	-		IAI47_06330	0.13	+1.2
1,287,699	-		IAI47_06330	0.13	-0.7
1,287,699	-		IAI47_06330	0.13	+0.1
1,287,700	+		IAI47_06330	0.13	+0.3
1,287,700	+		IAI47_06330	0.13	-1.8
1,287,700	+		IAI47_06330	0.13	+0.3
1,287,701	-		IAI47_06330	0.13	-1.7
1,287,701	-		IAI47_06330	0.13	-0.3
1,287,701	-		IAI47_06330	0.13	+1.2
1,287,701	-		IAI47_06330	0.13	+0.9
1,287,701	-		IAI47_06330	0.13	-0.9
1,287,701	-		IAI47_06330	0.13	+0.6
1,287,701	-		IAI47_06330	0.13	-0.0
1,287,701	-		IAI47_06330	0.13	-0.4
1,287,701	-		IAI47_06330	0.13	-1.2
1,287,701	-		IAI47_06330	0.13	+0.6
1,287,701	-		IAI47_06330	0.13	+0.7
1,287,701	-		IAI47_06330	0.13	+1.6
1,287,722	-		IAI47_06330	0.18	-1.3
1,287,722	-		IAI47_06330	0.18	-0.9
1,287,787	+		IAI47_06330	0.32	-0.5
1,287,787	+		IAI47_06330	0.32	-1.5
1,287,787	+		IAI47_06330	0.32	+0.9
1,287,787	+		IAI47_06330	0.32	-2.2
1,287,787	+		IAI47_06330	0.32	-0.4
1,287,809	-		IAI47_06330	0.37	-0.7
1,287,946	+		IAI47_06330	0.67	+1.5
1,287,946	+		IAI47_06330	0.67	+0.8
1,287,947	-		IAI47_06330	0.68	-0.7
1,287,947	-		IAI47_06330	0.68	+0.3
1,287,947	-		IAI47_06330	0.68	-1.4
1,287,947	-		IAI47_06330	0.68	-0.2
1,288,022	+		IAI47_06330	0.84	-0.1
1,288,022	+		IAI47_06330	0.84	-0.0
1,288,057	+				-3.0
1,288,058	-				-0.4
1,288,058	-				-1.0
1,288,092	-				+0.1
1,288,092	-				+0.6
1,288,117	+				+0.5
1,288,117	+				-0.8
1,288,118	-				+0.4
1,288,118	-				+0.3
1,288,121	+				+1.3
1,288,122	-				+0.5
1,288,128	-				+2.5
1,288,281	+				-0.7
1,288,282	-				-0.4
1,288,283	+				-0.2
1,288,283	+				+0.9
1,288,284	-				+0.1
1,288,284	-				+0.4
1,288,284	-				+1.3
1,288,284	-				-0.6