Strain Fitness in Pantoea sp. MT58 around IAI47_06145

Experiment: Ying_sugar7 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_06135 and IAI47_06140 are separated by 29 nucleotidesIAI47_06140 and IAI47_06145 are separated by 159 nucleotidesIAI47_06145 and IAI47_06150 are separated by 45 nucleotides IAI47_06135: IAI47_06135 - phosphohistidine phosphatase SixA, at 1,249,071 to 1,249,553 _06135 IAI47_06140: IAI47_06140 - endonuclease SmrB, at 1,249,583 to 1,250,131 _06140 IAI47_06145: IAI47_06145 - 50S ribosomal protein L3 N(5)-glutamine methyltransferase, at 1,250,291 to 1,251,223 _06145 IAI47_06150: IAI47_06150 - chorismate synthase, at 1,251,269 to 1,252,354 _06150 Position (kb) 1250 1251 1252Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1249.333 kb on + strand, within IAI47_06135at 1249.341 kb on + strand, within IAI47_06135at 1249.341 kb on + strand, within IAI47_06135at 1249.414 kb on + strand, within IAI47_06135at 1249.414 kb on + strand, within IAI47_06135at 1249.414 kb on + strand, within IAI47_06135at 1249.505 kb on + strandat 1249.584 kb on + strandat 1249.584 kb on + strandat 1249.584 kb on + strandat 1249.584 kb on + strandat 1249.726 kb on + strand, within IAI47_06140at 1249.726 kb on + strand, within IAI47_06140at 1249.726 kb on + strand, within IAI47_06140at 1249.727 kb on - strand, within IAI47_06140at 1249.727 kb on - strand, within IAI47_06140at 1249.811 kb on - strand, within IAI47_06140at 1249.811 kb on - strand, within IAI47_06140at 1249.811 kb on - strand, within IAI47_06140at 1249.811 kb on - strand, within IAI47_06140at 1249.858 kb on + strand, within IAI47_06140at 1249.858 kb on + strand, within IAI47_06140at 1249.858 kb on + strand, within IAI47_06140at 1249.858 kb on + strand, within IAI47_06140at 1249.858 kb on + strand, within IAI47_06140at 1249.858 kb on + strand, within IAI47_06140at 1249.859 kb on - strand, within IAI47_06140at 1249.859 kb on - strand, within IAI47_06140at 1249.860 kb on + strand, within IAI47_06140at 1249.860 kb on + strand, within IAI47_06140at 1249.860 kb on + strand, within IAI47_06140at 1249.861 kb on - strand, within IAI47_06140at 1249.861 kb on - strand, within IAI47_06140at 1249.933 kb on + strand, within IAI47_06140at 1249.934 kb on - strand, within IAI47_06140at 1249.934 kb on - strand, within IAI47_06140at 1249.965 kb on + strand, within IAI47_06140at 1249.966 kb on - strand, within IAI47_06140at 1249.966 kb on - strand, within IAI47_06140at 1249.966 kb on - strand, within IAI47_06140at 1250.003 kb on + strand, within IAI47_06140at 1250.035 kb on + strand, within IAI47_06140at 1250.035 kb on + strand, within IAI47_06140at 1250.036 kb on - strand, within IAI47_06140at 1250.078 kb on + strandat 1250.078 kb on + strandat 1250.078 kb on + strandat 1250.079 kb on - strandat 1250.079 kb on - strandat 1250.079 kb on - strandat 1250.079 kb on - strandat 1250.111 kb on + strandat 1250.111 kb on + strandat 1250.112 kb on - strandat 1250.112 kb on - strandat 1250.112 kb on - strandat 1250.112 kb on - strandat 1250.112 kb on - strandat 1250.112 kb on - strandat 1250.112 kb on - strandat 1250.112 kb on - strandat 1250.178 kb on - strandat 1250.178 kb on - strandat 1250.178 kb on - strandat 1250.183 kb on - strandat 1250.188 kb on + strandat 1250.198 kb on + strandat 1250.198 kb on + strandat 1250.198 kb on + strandat 1250.198 kb on + strandat 1250.198 kb on + strandat 1250.199 kb on - strandat 1250.199 kb on - strandat 1250.199 kb on - strandat 1250.254 kb on + strandat 1250.254 kb on + strandat 1250.254 kb on + strandat 1250.266 kb on + strandat 1250.266 kb on + strandat 1250.266 kb on + strandat 1250.401 kb on + strand, within IAI47_06145at 1250.401 kb on + strand, within IAI47_06145at 1250.464 kb on + strand, within IAI47_06145at 1250.476 kb on + strand, within IAI47_06145at 1250.476 kb on + strand, within IAI47_06145at 1250.476 kb on + strand, within IAI47_06145at 1250.564 kb on + strand, within IAI47_06145at 1250.564 kb on + strand, within IAI47_06145at 1250.564 kb on + strand, within IAI47_06145at 1250.575 kb on + strand, within IAI47_06145at 1250.575 kb on + strand, within IAI47_06145at 1250.575 kb on + strand, within IAI47_06145at 1250.575 kb on + strand, within IAI47_06145at 1250.575 kb on + strand, within IAI47_06145at 1250.695 kb on + strand, within IAI47_06145at 1250.695 kb on + strand, within IAI47_06145at 1250.704 kb on + strand, within IAI47_06145at 1250.704 kb on + strand, within IAI47_06145at 1250.704 kb on + strand, within IAI47_06145at 1250.704 kb on + strand, within IAI47_06145at 1250.705 kb on + strand, within IAI47_06145at 1250.779 kb on + strand, within IAI47_06145at 1250.886 kb on + strand, within IAI47_06145at 1250.886 kb on + strand, within IAI47_06145at 1250.891 kb on + strand, within IAI47_06145at 1250.891 kb on + strand, within IAI47_06145at 1250.918 kb on + strand, within IAI47_06145at 1250.918 kb on + strand, within IAI47_06145at 1250.918 kb on + strand, within IAI47_06145at 1250.918 kb on + strand, within IAI47_06145at 1251.041 kb on + strand, within IAI47_06145at 1251.041 kb on + strand, within IAI47_06145at 1251.041 kb on + strand, within IAI47_06145at 1251.107 kb on + strand, within IAI47_06145at 1251.124 kb on + strand, within IAI47_06145at 1251.212 kb on + strandat 1251.212 kb on + strandat 1251.214 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3
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1,249,333 + IAI47_06135 0.54 -1.7
1,249,341 + IAI47_06135 0.56 -2.4
1,249,341 + IAI47_06135 0.56 -2.5
1,249,414 + IAI47_06135 0.71 +0.3
1,249,414 + IAI47_06135 0.71 -1.0
1,249,414 + IAI47_06135 0.71 -1.3
1,249,505 + -0.5
1,249,584 + +0.1
1,249,584 + -3.4
1,249,584 + +0.7
1,249,584 + +0.1
1,249,726 + IAI47_06140 0.26 +0.5
1,249,726 + IAI47_06140 0.26 +2.2
1,249,726 + IAI47_06140 0.26 -0.4
1,249,727 - IAI47_06140 0.26 +0.1
1,249,727 - IAI47_06140 0.26 -0.1
1,249,811 - IAI47_06140 0.42 +0.5
1,249,811 - IAI47_06140 0.42 -0.0
1,249,811 - IAI47_06140 0.42 -0.7
1,249,811 - IAI47_06140 0.42 -0.4
1,249,858 + IAI47_06140 0.50 +0.1
1,249,858 + IAI47_06140 0.50 -0.4
1,249,858 + IAI47_06140 0.50 -0.2
1,249,858 + IAI47_06140 0.50 +0.3
1,249,858 + IAI47_06140 0.50 -0.4
1,249,858 + IAI47_06140 0.50 -0.2
1,249,859 - IAI47_06140 0.50 -0.8
1,249,859 - IAI47_06140 0.50 -0.4
1,249,860 + IAI47_06140 0.50 +0.4
1,249,860 + IAI47_06140 0.50 -1.3
1,249,860 + IAI47_06140 0.50 -0.1
1,249,861 - IAI47_06140 0.51 +0.0
1,249,861 - IAI47_06140 0.51 -0.3
1,249,933 + IAI47_06140 0.64 +2.9
1,249,934 - IAI47_06140 0.64 +0.3
1,249,934 - IAI47_06140 0.64 -0.4
1,249,965 + IAI47_06140 0.70 -0.1
1,249,966 - IAI47_06140 0.70 -0.8
1,249,966 - IAI47_06140 0.70 +0.2
1,249,966 - IAI47_06140 0.70 -1.5
1,250,003 + IAI47_06140 0.77 +0.7
1,250,035 + IAI47_06140 0.82 +0.4
1,250,035 + IAI47_06140 0.82 -1.3
1,250,036 - IAI47_06140 0.83 +1.0
1,250,078 + +0.5
1,250,078 + +1.6
1,250,078 + -0.3
1,250,079 - +1.1
1,250,079 - -2.0
1,250,079 - -1.9
1,250,079 - -1.1
1,250,111 + -1.3
1,250,111 + -0.9
1,250,112 - -1.7
1,250,112 - +1.9
1,250,112 - +0.8
1,250,112 - -0.5
1,250,112 - +0.1
1,250,112 - +1.2
1,250,112 - +0.2
1,250,112 - +0.3
1,250,178 - -0.1
1,250,178 - +0.9
1,250,178 - +0.3
1,250,183 - -0.2
1,250,188 + -1.1
1,250,198 + -0.3
1,250,198 + -0.1
1,250,198 + +2.6
1,250,198 + -1.6
1,250,198 + +0.3
1,250,199 - -1.0
1,250,199 - +1.8
1,250,199 - +1.3
1,250,254 + +1.9
1,250,254 + -0.9
1,250,254 + -0.9
1,250,266 + +1.6
1,250,266 + -1.0
1,250,266 + +0.6
1,250,401 + IAI47_06145 0.12 +0.5
1,250,401 + IAI47_06145 0.12 +1.3
1,250,464 + IAI47_06145 0.19 +0.1
1,250,476 + IAI47_06145 0.20 -1.3
1,250,476 + IAI47_06145 0.20 +1.3
1,250,476 + IAI47_06145 0.20 -1.7
1,250,564 + IAI47_06145 0.29 +0.3
1,250,564 + IAI47_06145 0.29 +0.3
1,250,564 + IAI47_06145 0.29 +1.6
1,250,575 + IAI47_06145 0.30 +0.8
1,250,575 + IAI47_06145 0.30 +0.6
1,250,575 + IAI47_06145 0.30 +0.1
1,250,575 + IAI47_06145 0.30 +0.4
1,250,575 + IAI47_06145 0.30 -0.7
1,250,695 + IAI47_06145 0.43 -0.2
1,250,695 + IAI47_06145 0.43 +0.9
1,250,704 + IAI47_06145 0.44 +1.2
1,250,704 + IAI47_06145 0.44 +1.1
1,250,704 + IAI47_06145 0.44 +1.8
1,250,704 + IAI47_06145 0.44 +0.1
1,250,705 + IAI47_06145 0.44 +0.3
1,250,779 + IAI47_06145 0.52 +0.0
1,250,886 + IAI47_06145 0.64 +1.8
1,250,886 + IAI47_06145 0.64 +2.6
1,250,891 + IAI47_06145 0.64 +0.6
1,250,891 + IAI47_06145 0.64 +0.6
1,250,918 + IAI47_06145 0.67 -0.0
1,250,918 + IAI47_06145 0.67 -0.3
1,250,918 + IAI47_06145 0.67 -0.7
1,250,918 + IAI47_06145 0.67 +1.2
1,251,041 + IAI47_06145 0.80 +2.3
1,251,041 + IAI47_06145 0.80 +0.9
1,251,041 + IAI47_06145 0.80 -0.8
1,251,107 + IAI47_06145 0.87 -0.1
1,251,124 + IAI47_06145 0.89 +0.4
1,251,212 + +1.2
1,251,212 + -1.4
1,251,214 + -0.9

Or see this region's nucleotide sequence