Strain Fitness in Pantoea sp. MT58 around IAI47_05545

Experiment: Ying_sugar7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 3
1,165,592	+		IAI47_05535	0.75	-2.0
1,165,592	+		IAI47_05535	0.75	+0.7
1,165,592	+		IAI47_05535	0.75	-1.2
1,165,592	+		IAI47_05535	0.75	-1.3
1,165,592	+		IAI47_05535	0.75	+1.6
1,165,662	+		IAI47_05535	0.81	+1.1
1,165,662	+		IAI47_05535	0.81	+2.1
1,165,663	-		IAI47_05535	0.81	-0.2
1,165,794	+				+0.3
1,165,794	+				+0.9
1,165,794	+				-3.1
1,165,794	+				+0.5
1,165,794	+				+0.2
1,165,795	-				-0.7
1,165,795	-				-0.9
1,165,795	-				+1.5
1,165,864	+				+0.9
1,165,894	+				-0.2
1,165,895	-				-0.3
1,165,927	-				+1.3
1,165,944	+				-0.3
1,166,166	+		IAI47_05540	0.53	+0.3
1,166,166	+		IAI47_05540	0.53	-0.5
1,166,166	+		IAI47_05540	0.53	-0.7
1,166,166	+		IAI47_05540	0.53	+0.7
1,166,166	+		IAI47_05540	0.53	-0.9
1,166,167	-		IAI47_05540	0.53	-0.7
1,166,167	-		IAI47_05540	0.53	+1.7
1,166,167	-		IAI47_05540	0.53	+0.6
1,166,167	-		IAI47_05540	0.53	-0.2
1,166,170	+		IAI47_05540	0.54	+0.1
1,166,170	+		IAI47_05540	0.54	-0.7
1,166,170	+		IAI47_05540	0.54	+0.5
1,166,170	+		IAI47_05540	0.54	+1.3
1,166,171	-		IAI47_05540	0.54	-3.4
1,166,171	-		IAI47_05540	0.54	-0.6
1,166,171	-		IAI47_05540	0.54	+1.1
1,166,171	-		IAI47_05540	0.54	+0.2
1,166,171	-		IAI47_05540	0.54	+0.3
1,166,172	+		IAI47_05540	0.55	-0.3
1,166,173	-		IAI47_05540	0.55	+0.3
1,166,173	-		IAI47_05540	0.55	+0.7
1,166,221	-		IAI47_05540	0.66	+0.3
1,166,221	-		IAI47_05540	0.66	-1.3
1,166,224	+		IAI47_05540	0.67	-0.0
1,166,224	+		IAI47_05540	0.67	-0.0
1,166,224	+		IAI47_05540	0.67	-0.3
1,166,224	+		IAI47_05540	0.67	+1.3
1,166,225	-		IAI47_05540	0.67	+0.9
1,166,278	+		IAI47_05540	0.80	+0.6
1,166,278	+		IAI47_05540	0.80	-1.1
1,166,278	+		IAI47_05540	0.80	-0.1
1,166,279	-		IAI47_05540	0.80	-0.0
1,166,279	-		IAI47_05540	0.80	-0.8
1,166,279	-		IAI47_05540	0.80	-0.8
1,166,279	-		IAI47_05540	0.80	+0.3
1,166,349	-				+0.2
1,166,363	+				-0.3
1,166,363	+				+0.7
1,166,363	+				+0.2
1,166,364	-				+1.4
1,166,364	-				-0.4
1,166,364	-				+0.6
1,166,365	+				+1.3
1,166,365	+				-0.9
1,166,365	+				-1.1
1,166,365	+				-1.4
1,166,365	+				-2.9
1,166,365	+				-0.2
1,166,365	+				-0.2
1,166,366	-				+0.1
1,166,366	-				-0.5
1,166,366	-				-0.3
1,166,366	-				-0.3
1,166,408	+				-0.0
1,166,408	+				-0.5
1,166,408	+				+1.3
1,166,408	+				+0.6
1,166,408	+				+0.3
1,166,409	-				+0.9
1,166,409	-				+1.9
1,166,409	-				-0.3
1,166,409	-				-1.0
1,166,409	-				+0.3
1,166,409	-				-0.4
1,166,418	+				-0.5
1,166,419	-				-0.5
1,166,419	-				+0.5
1,166,419	-				-1.7
1,166,420	-				+0.3
1,166,421	+				+1.3
1,166,421	+				-0.0
1,166,421	+				+1.1
1,166,421	+				+0.7
1,166,421	+				+1.3
1,166,422	-				+0.1
1,166,422	-				-1.3
1,166,430	+				-0.1
1,166,430	+				+0.3
1,166,489	+				-1.5
1,166,489	+				-0.2
1,166,489	+				+0.1
1,166,489	+				-0.2
1,166,536	+				-0.5
1,166,536	+				-0.3
1,166,536	+				-1.2
1,166,536	+				-1.1
1,166,536	+				+0.7
1,166,536	+				-0.7
1,166,536	+				+0.8
1,166,536	+				-0.3
1,166,537	-				-1.3
1,166,537	-				-0.5
1,166,537	-				+0.9
1,166,537	-				+0.9
1,166,537	-				+0.9
1,166,537	-				-1.7
1,166,537	-				-2.0
1,166,563	-				-1.9
1,166,827	+		IAI47_05545	0.29	+0.1
1,166,827	+		IAI47_05545	0.29	+0.5
1,166,827	+		IAI47_05545	0.29	+1.0
1,166,921	+		IAI47_05545	0.39	+1.4
1,166,922	-		IAI47_05545	0.39	-0.8
1,166,922	-		IAI47_05545	0.39	+0.9
1,166,984	+		IAI47_05545	0.45	-1.2
1,166,985	-		IAI47_05545	0.45	-1.1
1,167,017	-		IAI47_05545	0.49	-2.1
1,167,017	-		IAI47_05545	0.49	-1.3
1,167,020	+		IAI47_05545	0.49	+0.1
1,167,021	-		IAI47_05545	0.49	-0.2
1,167,021	-		IAI47_05545	0.49	-1.3
1,167,021	-		IAI47_05545	0.49	+0.2
1,167,030	+		IAI47_05545	0.50	-0.4
1,167,030	+		IAI47_05545	0.50	-0.5
1,167,030	+		IAI47_05545	0.50	-0.1
1,167,030	+		IAI47_05545	0.50	+0.7
1,167,031	-		IAI47_05545	0.50	+1.1
1,167,031	-		IAI47_05545	0.50	-1.7
1,167,034	+		IAI47_05545	0.50	+0.3
1,167,034	+		IAI47_05545	0.50	+0.3
1,167,034	+		IAI47_05545	0.50	+0.3
1,167,034	+		IAI47_05545	0.50	-1.5
1,167,034	+		IAI47_05545	0.50	-1.6
1,167,034	+		IAI47_05545	0.50	-1.3
1,167,035	-		IAI47_05545	0.51	+1.3
1,167,035	-		IAI47_05545	0.51	+1.3
1,167,035	-		IAI47_05545	0.51	-0.3
1,167,054	+		IAI47_05545	0.52	+0.8
1,167,055	-		IAI47_05545	0.53	+0.3
1,167,055	-		IAI47_05545	0.53	+0.3
1,167,118	+		IAI47_05545	0.59	+0.0
1,167,119	-		IAI47_05545	0.59	-1.8
1,167,125	+		IAI47_05545	0.60	+0.3
1,167,133	+		IAI47_05545	0.60	+0.7
1,167,133	+		IAI47_05545	0.60	+1.2
1,167,133	+		IAI47_05545	0.60	-0.5
1,167,133	+		IAI47_05545	0.60	-1.3
1,167,152	+		IAI47_05545	0.62	-0.3
1,167,181	+		IAI47_05545	0.65	-0.2
1,167,185	+		IAI47_05545	0.66	-0.3
1,167,185	+		IAI47_05545	0.66	-1.1
1,167,186	-		IAI47_05545	0.66	-1.8
1,167,186	-		IAI47_05545	0.66	-1.1
1,167,205	+		IAI47_05545	0.68	-0.5
1,167,206	-		IAI47_05545	0.68	+0.8
1,167,224	+		IAI47_05545	0.70	+1.3
1,167,224	+		IAI47_05545	0.70	-0.6
1,167,224	+		IAI47_05545	0.70	+0.6
1,167,224	+		IAI47_05545	0.70	-1.4
1,167,224	+		IAI47_05545	0.70	-0.5
1,167,224	+		IAI47_05545	0.70	-1.5
1,167,224	+		IAI47_05545	0.70	+0.3
1,167,224	+		IAI47_05545	0.70	-2.4
1,167,225	-		IAI47_05545	0.70	+0.6
1,167,225	-		IAI47_05545	0.70	-0.7
1,167,225	-		IAI47_05545	0.70	+0.9
1,167,225	-		IAI47_05545	0.70	+1.9
1,167,225	-		IAI47_05545	0.70	-0.8
1,167,225	-		IAI47_05545	0.70	-1.7
1,167,225	-		IAI47_05545	0.70	-0.4
1,167,225	-		IAI47_05545	0.70	-1.2
1,167,225	-		IAI47_05545	0.70	+1.3
1,167,225	-		IAI47_05545	0.70	-0.7
1,167,225	-		IAI47_05545	0.70	-0.7
1,167,225	-		IAI47_05545	0.70	-0.8
1,167,225	-		IAI47_05545	0.70	-0.4
1,167,227	-		IAI47_05545	0.70	+0.3
1,167,227	-		IAI47_05545	0.70	+0.0
1,167,246	+		IAI47_05545	0.72	-0.0
1,167,247	-		IAI47_05545	0.72	+0.5
1,167,288	-		IAI47_05545	0.76	-0.5
1,167,288	-		IAI47_05545	0.76	+0.7
1,167,288	-		IAI47_05545	0.76	+0.1
1,167,328	+		IAI47_05545	0.80	+0.6
1,167,328	+		IAI47_05545	0.80	+1.1
1,167,328	+		IAI47_05545	0.80	-0.7
1,167,329	-		IAI47_05545	0.80	+0.3
1,167,329	-		IAI47_05545	0.80	+0.3
1,167,329	-		IAI47_05545	0.80	-1.3
1,167,329	-		IAI47_05545	0.80	+0.8
1,167,329	-		IAI47_05545	0.80	-2.4
1,167,329	-		IAI47_05545	0.80	+0.5
1,167,329	-		IAI47_05545	0.80	-0.6
1,167,329	-		IAI47_05545	0.80	+0.3
1,167,332	+		IAI47_05545	0.81	-0.8
1,167,332	+		IAI47_05545	0.81	+0.5
1,167,332	+		IAI47_05545	0.81	-3.0
1,167,333	-		IAI47_05545	0.81	-0.5
1,167,333	-		IAI47_05545	0.81	+1.5
1,167,339	+		IAI47_05545	0.81	-0.3
1,167,378	+		IAI47_05545	0.85	-0.8
1,167,378	+		IAI47_05545	0.85	-1.1
1,167,378	+		IAI47_05545	0.85	-0.7
1,167,378	+		IAI47_05545	0.85	-0.7
1,167,378	+		IAI47_05545	0.85	-0.3
1,167,378	+		IAI47_05545	0.85	-0.7
1,167,379	-		IAI47_05545	0.85	+0.7
1,167,379	-		IAI47_05545	0.85	-2.3
1,167,379	-		IAI47_05545	0.85	-1.1
1,167,379	-		IAI47_05545	0.85	-0.7
1,167,395	+		IAI47_05545	0.87	+0.3
1,167,496	+				+0.2
1,167,497	-				-0.3
1,167,527	-				-0.7
1,167,551	+				+0.3
1,167,551	+				-0.8
1,167,551	+				-1.7
1,167,551	+				+1.0
1,167,552	-				+1.1
1,167,575	-				-0.4
1,167,575	-				-0.1
1,167,583	-				+1.0
1,167,625	-				+1.5
1,167,673	+				+1.4
1,167,673	+				-1.5
1,167,677	+				+0.3
1,167,677	+				-0.3
1,167,677	+				-1.3
1,167,677	+				+1.6
1,167,677	+				-0.1
1,167,677	+				+1.3
1,167,678	-				+0.6
1,167,678	-				+0.2
1,167,695	+				+0.9
1,167,696	-				+1.0
1,167,709	+				+0.6
1,167,709	+				+0.9
1,167,709	+				-2.0
1,167,710	-				+0.7
1,167,710	-				-0.8
1,167,710	-				+0.9
1,167,710	-				-2.7
1,167,713	+				-0.7
1,167,714	-				-0.9
1,167,714	-				-0.4
1,167,714	-				-1.3
1,167,768	+				+0.6
1,167,797	+				+0.1
1,167,798	-				-0.0
1,167,828	+				-0.5
1,167,829	-				-0.5
1,167,891	-				+1.5
1,167,909	+				+0.3
1,167,909	+				+0.1
1,167,909	+				-0.4
1,167,909	+				+3.1
1,167,910	-		IAI47_05550	0.10	+0.7
1,167,910	-				+0.0
1,167,925	-		IAI47_05550	0.11	-0.1
1,167,989	+		IAI47_05550	0.15	+0.5
1,167,989	+		IAI47_05550	0.15	-0.6
1,167,990	-		IAI47_05550	0.15	+0.3
1,168,008	+		IAI47_05550	0.16	+1.1
1,168,008	+		IAI47_05550	0.16	+1.0
1,168,008	+		IAI47_05550	0.16	+1.6
1,168,008	+		IAI47_05550	0.16	-1.1
1,168,008	+		IAI47_05550	0.16	-0.7
1,168,008	+		IAI47_05550	0.16	-1.4
1,168,008	+		IAI47_05550	0.16	-0.5
1,168,008	+		IAI47_05550	0.16	+1.6
1,168,009	-		IAI47_05550	0.16	+0.4
1,168,009	-		IAI47_05550	0.16	+1.8
1,168,018	-		IAI47_05550	0.17	-0.2
1,168,018	-		IAI47_05550	0.17	-0.7
1,168,018	-		IAI47_05550	0.17	+1.6
1,168,018	-		IAI47_05550	0.17	+0.2
1,168,034	+		IAI47_05550	0.18	-1.8
1,168,034	+		IAI47_05550	0.18	+0.3
1,168,034	+		IAI47_05550	0.18	+0.3
1,168,034	+		IAI47_05550	0.18	+0.6
1,168,034	+		IAI47_05550	0.18	-0.2
1,168,035	-		IAI47_05550	0.18	+1.9
1,168,035	-		IAI47_05550	0.18	+1.1
1,168,035	-		IAI47_05550	0.18	-1.3
1,168,035	-		IAI47_05550	0.18	-0.1
1,168,118	+		IAI47_05550	0.23	+0.5
1,168,199	+		IAI47_05550	0.28	+2.3
1,168,199	+		IAI47_05550	0.28	-0.4
1,168,199	+		IAI47_05550	0.28	-0.7
1,168,200	-		IAI47_05550	0.28	+0.0
1,168,230	+		IAI47_05550	0.29	-0.1
1,168,231	-		IAI47_05550	0.29	-1.3
1,168,231	-		IAI47_05550	0.29	-0.4
1,168,267	+		IAI47_05550	0.32	-1.3
1,168,267	+		IAI47_05550	0.32	-0.2
1,168,267	+		IAI47_05550	0.32	+2.3
1,168,267	+		IAI47_05550	0.32	-1.3
1,168,268	-		IAI47_05550	0.32	+0.6
1,168,351	+		IAI47_05550	0.37	+0.9
1,168,483	+		IAI47_05550	0.45	-0.7
1,168,506	+		IAI47_05550	0.46	+0.0
1,168,507	-		IAI47_05550	0.46	+0.1
1,168,514	+		IAI47_05550	0.47	-0.1
1,168,518	+		IAI47_05550	0.47	+1.0
1,168,519	-		IAI47_05550	0.47	+0.6
1,168,519	-		IAI47_05550	0.47	-0.9