Strain Fitness in Pantoea sp. MT58 around IAI47_04400

Experiment: Ying_sugar7 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_04390 and IAI47_04395 are separated by 96 nucleotidesIAI47_04395 and IAI47_04400 are separated by 289 nucleotidesIAI47_04400 and IAI47_04405 are separated by 5 nucleotides IAI47_04390: IAI47_04390 - 50S ribosomal protein L19, at 920,567 to 920,914 _04390 IAI47_04395: IAI47_04395 - GNAT family N-acetyltransferase, at 921,011 to 921,547 _04395 IAI47_04400: IAI47_04400 - 3-deoxy-7-phosphoheptulonate synthase, at 921,837 to 922,916 _04400 IAI47_04405: IAI47_04405 - bifunctional chorismate mutase/prephenate dehydrogenase, at 922,922 to 924,043 _04405 Position (kb) 921 922 923Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 921.039 kb on + strandat 921.040 kb on - strandat 921.049 kb on + strandat 921.050 kb on - strandat 921.052 kb on + strandat 921.068 kb on + strand, within IAI47_04395at 921.071 kb on + strand, within IAI47_04395at 921.071 kb on + strand, within IAI47_04395at 921.071 kb on + strand, within IAI47_04395at 921.071 kb on + strand, within IAI47_04395at 921.072 kb on - strand, within IAI47_04395at 921.203 kb on + strand, within IAI47_04395at 921.203 kb on + strand, within IAI47_04395at 921.203 kb on + strand, within IAI47_04395at 921.203 kb on + strand, within IAI47_04395at 921.204 kb on - strand, within IAI47_04395at 921.204 kb on - strand, within IAI47_04395at 921.204 kb on - strand, within IAI47_04395at 921.204 kb on - strand, within IAI47_04395at 921.266 kb on + strand, within IAI47_04395at 921.266 kb on + strand, within IAI47_04395at 921.266 kb on + strand, within IAI47_04395at 921.267 kb on - strand, within IAI47_04395at 921.267 kb on - strand, within IAI47_04395at 921.267 kb on - strand, within IAI47_04395at 921.267 kb on - strand, within IAI47_04395at 921.267 kb on - strand, within IAI47_04395at 921.267 kb on - strand, within IAI47_04395at 921.267 kb on - strand, within IAI47_04395at 921.302 kb on + strand, within IAI47_04395at 921.302 kb on + strand, within IAI47_04395at 921.303 kb on - strand, within IAI47_04395at 921.303 kb on - strand, within IAI47_04395at 921.385 kb on + strand, within IAI47_04395at 921.421 kb on - strand, within IAI47_04395at 921.421 kb on - strand, within IAI47_04395at 921.484 kb on + strand, within IAI47_04395at 921.485 kb on - strand, within IAI47_04395at 921.485 kb on - strand, within IAI47_04395at 921.503 kb on + strandat 921.504 kb on - strandat 921.504 kb on - strandat 921.530 kb on - strandat 921.547 kb on + strandat 921.547 kb on + strandat 921.547 kb on + strandat 921.574 kb on + strandat 921.574 kb on + strandat 921.574 kb on + strandat 921.574 kb on + strandat 921.575 kb on - strandat 921.609 kb on + strandat 921.610 kb on - strandat 921.695 kb on - strandat 921.762 kb on - strandat 921.762 kb on - strandat 921.778 kb on + strandat 921.814 kb on + strandat 921.883 kb on + strandat 921.883 kb on + strandat 921.965 kb on + strand, within IAI47_04400at 921.965 kb on + strand, within IAI47_04400at 921.965 kb on + strand, within IAI47_04400at 921.977 kb on + strand, within IAI47_04400at 921.977 kb on + strand, within IAI47_04400at 921.978 kb on - strand, within IAI47_04400at 922.053 kb on + strand, within IAI47_04400at 922.053 kb on + strand, within IAI47_04400at 922.053 kb on + strand, within IAI47_04400at 922.053 kb on + strand, within IAI47_04400at 922.054 kb on - strand, within IAI47_04400at 922.101 kb on + strand, within IAI47_04400at 922.101 kb on + strand, within IAI47_04400at 922.101 kb on + strand, within IAI47_04400at 922.101 kb on + strand, within IAI47_04400at 922.101 kb on + strand, within IAI47_04400at 922.102 kb on - strand, within IAI47_04400at 922.102 kb on - strand, within IAI47_04400at 922.103 kb on + strand, within IAI47_04400at 922.104 kb on - strand, within IAI47_04400at 922.104 kb on - strand, within IAI47_04400at 922.139 kb on + strand, within IAI47_04400at 922.173 kb on + strand, within IAI47_04400at 922.173 kb on + strand, within IAI47_04400at 922.173 kb on + strand, within IAI47_04400at 922.173 kb on + strand, within IAI47_04400at 922.173 kb on + strand, within IAI47_04400at 922.173 kb on + strand, within IAI47_04400at 922.173 kb on + strand, within IAI47_04400at 922.174 kb on - strand, within IAI47_04400at 922.179 kb on + strand, within IAI47_04400at 922.211 kb on + strand, within IAI47_04400at 922.211 kb on + strand, within IAI47_04400at 922.211 kb on + strand, within IAI47_04400at 922.212 kb on - strand, within IAI47_04400at 922.283 kb on + strand, within IAI47_04400at 922.284 kb on - strand, within IAI47_04400at 922.293 kb on + strand, within IAI47_04400at 922.531 kb on + strand, within IAI47_04400at 922.531 kb on + strand, within IAI47_04400at 922.560 kb on + strand, within IAI47_04400at 922.560 kb on + strand, within IAI47_04400at 922.560 kb on + strand, within IAI47_04400at 922.560 kb on + strand, within IAI47_04400at 922.560 kb on + strand, within IAI47_04400at 922.630 kb on + strand, within IAI47_04400at 922.630 kb on + strand, within IAI47_04400at 922.630 kb on + strand, within IAI47_04400at 922.630 kb on + strand, within IAI47_04400at 922.751 kb on + strand, within IAI47_04400at 922.914 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3
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921,039 + -2.6
921,040 - +0.8
921,049 + +0.1
921,050 - +1.9
921,052 + -1.0
921,068 + IAI47_04395 0.11 -2.0
921,071 + IAI47_04395 0.11 -0.4
921,071 + IAI47_04395 0.11 +0.0
921,071 + IAI47_04395 0.11 -0.1
921,071 + IAI47_04395 0.11 -0.6
921,072 - IAI47_04395 0.11 -1.8
921,203 + IAI47_04395 0.36 +2.2
921,203 + IAI47_04395 0.36 +0.7
921,203 + IAI47_04395 0.36 -1.6
921,203 + IAI47_04395 0.36 -0.8
921,204 - IAI47_04395 0.36 +2.4
921,204 - IAI47_04395 0.36 -0.9
921,204 - IAI47_04395 0.36 -0.4
921,204 - IAI47_04395 0.36 -0.4
921,266 + IAI47_04395 0.47 -1.0
921,266 + IAI47_04395 0.47 +0.1
921,266 + IAI47_04395 0.47 -0.4
921,267 - IAI47_04395 0.48 +0.4
921,267 - IAI47_04395 0.48 -0.6
921,267 - IAI47_04395 0.48 -1.6
921,267 - IAI47_04395 0.48 +0.9
921,267 - IAI47_04395 0.48 +0.9
921,267 - IAI47_04395 0.48 -1.1
921,267 - IAI47_04395 0.48 +2.1
921,302 + IAI47_04395 0.54 -0.9
921,302 + IAI47_04395 0.54 -0.6
921,303 - IAI47_04395 0.54 +0.1
921,303 - IAI47_04395 0.54 +0.6
921,385 + IAI47_04395 0.70 -1.2
921,421 - IAI47_04395 0.76 -0.6
921,421 - IAI47_04395 0.76 -0.4
921,484 + IAI47_04395 0.88 +0.4
921,485 - IAI47_04395 0.88 -0.4
921,485 - IAI47_04395 0.88 +0.7
921,503 + +0.0
921,504 - -3.3
921,504 - -0.6
921,530 - +1.8
921,547 + -2.2
921,547 + +0.1
921,547 + -1.1
921,574 + +0.2
921,574 + -0.6
921,574 + +0.7
921,574 + +0.7
921,575 - +0.4
921,609 + +3.0
921,610 - +0.1
921,695 - -1.0
921,762 - -0.0
921,762 - -0.2
921,778 + +0.4
921,814 + -1.2
921,883 + -2.6
921,883 + -1.4
921,965 + IAI47_04400 0.12 -0.9
921,965 + IAI47_04400 0.12 -0.9
921,965 + IAI47_04400 0.12 -1.6
921,977 + IAI47_04400 0.13 +0.4
921,977 + IAI47_04400 0.13 -1.2
921,978 - IAI47_04400 0.13 -1.6
922,053 + IAI47_04400 0.20 -0.1
922,053 + IAI47_04400 0.20 -2.4
922,053 + IAI47_04400 0.20 -2.2
922,053 + IAI47_04400 0.20 -1.2
922,054 - IAI47_04400 0.20 -2.4
922,101 + IAI47_04400 0.24 -0.2
922,101 + IAI47_04400 0.24 -0.6
922,101 + IAI47_04400 0.24 -0.6
922,101 + IAI47_04400 0.24 +2.7
922,101 + IAI47_04400 0.24 -0.9
922,102 - IAI47_04400 0.25 -3.4
922,102 - IAI47_04400 0.25 -1.6
922,103 + IAI47_04400 0.25 -0.4
922,104 - IAI47_04400 0.25 -1.2
922,104 - IAI47_04400 0.25 -2.8
922,139 + IAI47_04400 0.28 -1.6
922,173 + IAI47_04400 0.31 -0.9
922,173 + IAI47_04400 0.31 +0.0
922,173 + IAI47_04400 0.31 -0.2
922,173 + IAI47_04400 0.31 -1.0
922,173 + IAI47_04400 0.31 -0.2
922,173 + IAI47_04400 0.31 -1.6
922,173 + IAI47_04400 0.31 +1.0
922,174 - IAI47_04400 0.31 -0.6
922,179 + IAI47_04400 0.32 -1.2
922,211 + IAI47_04400 0.35 -0.6
922,211 + IAI47_04400 0.35 +0.7
922,211 + IAI47_04400 0.35 -1.2
922,212 - IAI47_04400 0.35 -0.6
922,283 + IAI47_04400 0.41 -2.8
922,284 - IAI47_04400 0.41 -2.4
922,293 + IAI47_04400 0.42 +0.4
922,531 + IAI47_04400 0.64 -2.6
922,531 + IAI47_04400 0.64 -1.2
922,560 + IAI47_04400 0.67 -2.7
922,560 + IAI47_04400 0.67 -3.1
922,560 + IAI47_04400 0.67 -2.0
922,560 + IAI47_04400 0.67 -0.4
922,560 + IAI47_04400 0.67 -1.2
922,630 + IAI47_04400 0.73 -2.2
922,630 + IAI47_04400 0.73 -0.6
922,630 + IAI47_04400 0.73 -1.2
922,630 + IAI47_04400 0.73 -0.9
922,751 + IAI47_04400 0.85 -2.0
922,914 + -2.4

Or see this region's nucleotide sequence