Strain Fitness in Pantoea sp. MT58 around IAI47_04095

Experiment: Ying_sugar7 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_04090 and IAI47_04095 are separated by 45 nucleotidesIAI47_04095 and IAI47_04100 are separated by 19 nucleotidesIAI47_04100 and IAI47_04105 are separated by 74 nucleotides IAI47_04090: IAI47_04090 - glucarate dehydratase, at 855,310 to 856,641 _04090 IAI47_04095: IAI47_04095 - 2-dehydro-3-deoxyglucarate aldolase, at 856,687 to 857,457 _04095 IAI47_04100: IAI47_04100 - 2-hydroxy-3-oxopropionate reductase, at 857,477 to 858,361 _04100 IAI47_04105: IAI47_04105 - glycerate kinase, at 858,436 to 859,575 _04105 Position (kb) 856 857 858Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 855.748 kb on + strand, within IAI47_04090at 855.749 kb on - strand, within IAI47_04090at 855.757 kb on + strand, within IAI47_04090at 855.757 kb on + strand, within IAI47_04090at 855.758 kb on - strand, within IAI47_04090at 855.758 kb on - strand, within IAI47_04090at 855.758 kb on - strand, within IAI47_04090at 855.758 kb on - strand, within IAI47_04090at 855.758 kb on - strand, within IAI47_04090at 855.775 kb on - strand, within IAI47_04090at 855.791 kb on - strand, within IAI47_04090at 855.823 kb on + strand, within IAI47_04090at 855.823 kb on + strand, within IAI47_04090at 855.839 kb on + strand, within IAI47_04090at 855.866 kb on + strand, within IAI47_04090at 855.867 kb on - strand, within IAI47_04090at 855.867 kb on - strand, within IAI47_04090at 855.887 kb on - strand, within IAI47_04090at 855.887 kb on - strand, within IAI47_04090at 855.895 kb on + strand, within IAI47_04090at 855.895 kb on + strand, within IAI47_04090at 855.896 kb on - strand, within IAI47_04090at 855.896 kb on - strand, within IAI47_04090at 855.908 kb on - strand, within IAI47_04090at 855.993 kb on + strand, within IAI47_04090at 856.056 kb on + strand, within IAI47_04090at 856.056 kb on + strand, within IAI47_04090at 856.056 kb on + strand, within IAI47_04090at 856.056 kb on + strand, within IAI47_04090at 856.056 kb on + strand, within IAI47_04090at 856.057 kb on - strand, within IAI47_04090at 856.057 kb on - strand, within IAI47_04090at 856.057 kb on - strand, within IAI47_04090at 856.060 kb on + strand, within IAI47_04090at 856.073 kb on - strand, within IAI47_04090at 856.105 kb on + strand, within IAI47_04090at 856.105 kb on + strand, within IAI47_04090at 856.106 kb on - strand, within IAI47_04090at 856.167 kb on + strand, within IAI47_04090at 856.167 kb on + strand, within IAI47_04090at 856.167 kb on + strand, within IAI47_04090at 856.167 kb on + strand, within IAI47_04090at 856.168 kb on - strand, within IAI47_04090at 856.168 kb on - strand, within IAI47_04090at 856.168 kb on - strand, within IAI47_04090at 856.200 kb on + strand, within IAI47_04090at 856.201 kb on - strand, within IAI47_04090at 856.354 kb on - strand, within IAI47_04090at 856.354 kb on - strand, within IAI47_04090at 856.398 kb on + strand, within IAI47_04090at 856.399 kb on - strand, within IAI47_04090at 856.399 kb on - strand, within IAI47_04090at 856.455 kb on + strand, within IAI47_04090at 856.455 kb on + strand, within IAI47_04090at 856.464 kb on + strand, within IAI47_04090at 856.464 kb on + strand, within IAI47_04090at 856.499 kb on + strand, within IAI47_04090at 856.510 kb on - strandat 856.541 kb on - strandat 856.592 kb on + strandat 856.617 kb on + strandat 856.618 kb on - strandat 856.692 kb on + strandat 856.692 kb on + strandat 856.692 kb on + strandat 856.692 kb on + strandat 856.692 kb on + strandat 856.693 kb on - strandat 856.693 kb on - strandat 856.862 kb on + strand, within IAI47_04095at 856.863 kb on - strand, within IAI47_04095at 856.938 kb on + strand, within IAI47_04095at 856.938 kb on + strand, within IAI47_04095at 856.938 kb on + strand, within IAI47_04095at 856.939 kb on - strand, within IAI47_04095at 856.939 kb on - strand, within IAI47_04095at 856.939 kb on - strand, within IAI47_04095at 856.963 kb on - strand, within IAI47_04095at 857.080 kb on + strand, within IAI47_04095at 857.081 kb on - strand, within IAI47_04095at 857.081 kb on - strand, within IAI47_04095at 857.081 kb on - strand, within IAI47_04095at 857.081 kb on - strand, within IAI47_04095at 857.081 kb on - strand, within IAI47_04095at 857.081 kb on - strand, within IAI47_04095at 857.081 kb on - strand, within IAI47_04095at 857.081 kb on - strand, within IAI47_04095at 857.098 kb on + strand, within IAI47_04095at 857.098 kb on + strand, within IAI47_04095at 857.098 kb on + strand, within IAI47_04095at 857.099 kb on - strand, within IAI47_04095at 857.243 kb on - strand, within IAI47_04095at 857.283 kb on + strand, within IAI47_04095at 857.284 kb on - strand, within IAI47_04095at 857.342 kb on + strand, within IAI47_04095at 857.362 kb on + strand, within IAI47_04095at 857.435 kb on + strandat 857.449 kb on - strandat 857.449 kb on - strandat 857.449 kb on - strandat 857.463 kb on + strandat 857.464 kb on - strandat 857.491 kb on + strandat 857.556 kb on + strandat 857.557 kb on - strandat 857.557 kb on - strandat 857.596 kb on + strand, within IAI47_04100at 857.597 kb on - strand, within IAI47_04100at 857.659 kb on + strand, within IAI47_04100at 857.659 kb on + strand, within IAI47_04100at 857.659 kb on + strand, within IAI47_04100at 857.659 kb on + strand, within IAI47_04100at 857.660 kb on - strand, within IAI47_04100at 857.660 kb on - strand, within IAI47_04100at 857.660 kb on - strand, within IAI47_04100at 857.660 kb on - strand, within IAI47_04100at 857.717 kb on - strand, within IAI47_04100at 857.787 kb on + strand, within IAI47_04100at 857.788 kb on - strand, within IAI47_04100at 857.893 kb on + strand, within IAI47_04100at 857.894 kb on - strand, within IAI47_04100at 857.915 kb on + strand, within IAI47_04100at 857.915 kb on + strand, within IAI47_04100at 857.915 kb on + strand, within IAI47_04100at 857.915 kb on + strand, within IAI47_04100at 857.915 kb on + strand, within IAI47_04100at 857.916 kb on - strand, within IAI47_04100at 857.916 kb on - strand, within IAI47_04100at 857.954 kb on - strand, within IAI47_04100at 857.983 kb on + strand, within IAI47_04100at 857.983 kb on + strand, within IAI47_04100at 857.984 kb on - strand, within IAI47_04100at 857.984 kb on - strand, within IAI47_04100at 858.081 kb on - strand, within IAI47_04100at 858.211 kb on + strand, within IAI47_04100at 858.211 kb on + strand, within IAI47_04100at 858.212 kb on - strand, within IAI47_04100at 858.212 kb on - strand, within IAI47_04100at 858.323 kb on + strandat 858.323 kb on + strandat 858.323 kb on + strandat 858.324 kb on - strandat 858.324 kb on - strandat 858.324 kb on - strandat 858.326 kb on + strandat 858.326 kb on + strandat 858.326 kb on + strandat 858.326 kb on + strandat 858.327 kb on - strandat 858.327 kb on - strandat 858.337 kb on - strandat 858.337 kb on - strandat 858.359 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3
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855,748 + IAI47_04090 0.33 +0.6
855,749 - IAI47_04090 0.33 +0.2
855,757 + IAI47_04090 0.34 -1.4
855,757 + IAI47_04090 0.34 +0.4
855,758 - IAI47_04090 0.34 +0.7
855,758 - IAI47_04090 0.34 -0.6
855,758 - IAI47_04090 0.34 +0.4
855,758 - IAI47_04090 0.34 -2.4
855,758 - IAI47_04090 0.34 +1.0
855,775 - IAI47_04090 0.35 -3.1
855,791 - IAI47_04090 0.36 -0.3
855,823 + IAI47_04090 0.39 +0.8
855,823 + IAI47_04090 0.39 +0.6
855,839 + IAI47_04090 0.40 +0.4
855,866 + IAI47_04090 0.42 -1.2
855,867 - IAI47_04090 0.42 +1.4
855,867 - IAI47_04090 0.42 +0.2
855,887 - IAI47_04090 0.43 -0.2
855,887 - IAI47_04090 0.43 -0.0
855,895 + IAI47_04090 0.44 -0.7
855,895 + IAI47_04090 0.44 -1.6
855,896 - IAI47_04090 0.44 -0.6
855,896 - IAI47_04090 0.44 -0.6
855,908 - IAI47_04090 0.45 +0.1
855,993 + IAI47_04090 0.51 +1.4
856,056 + IAI47_04090 0.56 -0.2
856,056 + IAI47_04090 0.56 +0.6
856,056 + IAI47_04090 0.56 +0.4
856,056 + IAI47_04090 0.56 +0.4
856,056 + IAI47_04090 0.56 +0.0
856,057 - IAI47_04090 0.56 -0.2
856,057 - IAI47_04090 0.56 -0.5
856,057 - IAI47_04090 0.56 +1.0
856,060 + IAI47_04090 0.56 +1.0
856,073 - IAI47_04090 0.57 +2.4
856,105 + IAI47_04090 0.60 -0.3
856,105 + IAI47_04090 0.60 +0.6
856,106 - IAI47_04090 0.60 -0.3
856,167 + IAI47_04090 0.64 -0.9
856,167 + IAI47_04090 0.64 +0.4
856,167 + IAI47_04090 0.64 -0.4
856,167 + IAI47_04090 0.64 +0.4
856,168 - IAI47_04090 0.64 +1.4
856,168 - IAI47_04090 0.64 -0.2
856,168 - IAI47_04090 0.64 -2.2
856,200 + IAI47_04090 0.67 +2.2
856,201 - IAI47_04090 0.67 +0.7
856,354 - IAI47_04090 0.78 +0.4
856,354 - IAI47_04090 0.78 +1.0
856,398 + IAI47_04090 0.82 -1.2
856,399 - IAI47_04090 0.82 +1.6
856,399 - IAI47_04090 0.82 +1.0
856,455 + IAI47_04090 0.86 -0.5
856,455 + IAI47_04090 0.86 +1.1
856,464 + IAI47_04090 0.87 -0.5
856,464 + IAI47_04090 0.87 -0.6
856,499 + IAI47_04090 0.89 -0.1
856,510 - +0.4
856,541 - -0.4
856,592 + -1.2
856,617 + -2.0
856,618 - +2.1
856,692 + +2.5
856,692 + +0.5
856,692 + +1.7
856,692 + +1.6
856,692 + +1.0
856,693 - +0.5
856,693 - -3.0
856,862 + IAI47_04095 0.23 -0.6
856,863 - IAI47_04095 0.23 +1.4
856,938 + IAI47_04095 0.33 -2.0
856,938 + IAI47_04095 0.33 -2.1
856,938 + IAI47_04095 0.33 -0.6
856,939 - IAI47_04095 0.33 -1.2
856,939 - IAI47_04095 0.33 +1.1
856,939 - IAI47_04095 0.33 +1.0
856,963 - IAI47_04095 0.36 +1.3
857,080 + IAI47_04095 0.51 +1.7
857,081 - IAI47_04095 0.51 +2.0
857,081 - IAI47_04095 0.51 +0.3
857,081 - IAI47_04095 0.51 +2.0
857,081 - IAI47_04095 0.51 +0.5
857,081 - IAI47_04095 0.51 +0.2
857,081 - IAI47_04095 0.51 +2.0
857,081 - IAI47_04095 0.51 -0.0
857,081 - IAI47_04095 0.51 +0.9
857,098 + IAI47_04095 0.53 +1.3
857,098 + IAI47_04095 0.53 -0.6
857,098 + IAI47_04095 0.53 +1.4
857,099 - IAI47_04095 0.53 -1.6
857,243 - IAI47_04095 0.72 +0.4
857,283 + IAI47_04095 0.77 +0.1
857,284 - IAI47_04095 0.77 +0.4
857,342 + IAI47_04095 0.85 +0.1
857,362 + IAI47_04095 0.88 -1.2
857,435 + +0.1
857,449 - -1.0
857,449 - -0.7
857,449 - +1.4
857,463 + +1.6
857,464 - +2.8
857,491 + -0.0
857,556 + -0.7
857,557 - -0.2
857,557 - +0.4
857,596 + IAI47_04100 0.13 +0.4
857,597 - IAI47_04100 0.14 -0.5
857,659 + IAI47_04100 0.21 -1.0
857,659 + IAI47_04100 0.21 +0.4
857,659 + IAI47_04100 0.21 -1.0
857,659 + IAI47_04100 0.21 -0.8
857,660 - IAI47_04100 0.21 +0.4
857,660 - IAI47_04100 0.21 +1.1
857,660 - IAI47_04100 0.21 +1.5
857,660 - IAI47_04100 0.21 -0.8
857,717 - IAI47_04100 0.27 -0.5
857,787 + IAI47_04100 0.35 +0.8
857,788 - IAI47_04100 0.35 -0.2
857,893 + IAI47_04100 0.47 +1.3
857,894 - IAI47_04100 0.47 +1.4
857,915 + IAI47_04100 0.49 +0.5
857,915 + IAI47_04100 0.49 +3.0
857,915 + IAI47_04100 0.49 +0.8
857,915 + IAI47_04100 0.49 -0.3
857,915 + IAI47_04100 0.49 +0.7
857,916 - IAI47_04100 0.50 +0.0
857,916 - IAI47_04100 0.50 -2.0
857,954 - IAI47_04100 0.54 -0.7
857,983 + IAI47_04100 0.57 -1.4
857,983 + IAI47_04100 0.57 +1.4
857,984 - IAI47_04100 0.57 -0.8
857,984 - IAI47_04100 0.57 -0.6
858,081 - IAI47_04100 0.68 +0.7
858,211 + IAI47_04100 0.83 -0.4
858,211 + IAI47_04100 0.83 +0.6
858,212 - IAI47_04100 0.83 -2.0
858,212 - IAI47_04100 0.83 +0.9
858,323 + -0.3
858,323 + +1.0
858,323 + -1.0
858,324 - +0.5
858,324 - -0.4
858,324 - -0.5
858,326 + +0.4
858,326 + -0.6
858,326 + -0.9
858,326 + -0.8
858,327 - +1.7
858,327 - +1.0
858,337 - -0.6
858,337 - +0.5
858,359 + +0.4

Or see this region's nucleotide sequence