Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03100 and IAI47_03105 are separated by 70 nucleotides IAI47_03105 and IAI47_03110 are separated by 43 nucleotides IAI47_03110 and IAI47_03115 are separated by 438 nucleotides
IAI47_03100: IAI47_03100 - bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase, at 640,492 to 643,344
_03100
IAI47_03105: IAI47_03105 - bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE, at 643,415 to 644,839
_03105
IAI47_03110: IAI47_03110 - accessory factor UbiK family protein, at 644,883 to 645,269
_03110
IAI47_03115: IAI47_03115 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 645,708 to 646,364
_03115
Position (kb) 643
644
645 Strain fitness (log2 ratio) -2
-1
0
1
2 at 642.477 kb on + strand, within IAI47_03100 at 642.477 kb on + strand, within IAI47_03100 at 642.477 kb on + strand, within IAI47_03100 at 642.477 kb on + strand, within IAI47_03100 at 642.477 kb on + strand, within IAI47_03100 at 642.477 kb on + strand, within IAI47_03100 at 642.477 kb on + strand, within IAI47_03100 at 642.477 kb on + strand, within IAI47_03100 at 642.478 kb on - strand, within IAI47_03100 at 642.478 kb on - strand, within IAI47_03100 at 642.478 kb on - strand, within IAI47_03100 at 642.485 kb on + strand, within IAI47_03100 at 642.485 kb on + strand, within IAI47_03100 at 642.485 kb on + strand, within IAI47_03100 at 642.486 kb on - strand, within IAI47_03100 at 642.486 kb on - strand, within IAI47_03100 at 642.486 kb on - strand, within IAI47_03100 at 642.486 kb on - strand, within IAI47_03100 at 642.486 kb on - strand, within IAI47_03100 at 642.486 kb on - strand, within IAI47_03100 at 642.494 kb on - strand, within IAI47_03100 at 642.516 kb on + strand, within IAI47_03100 at 642.516 kb on + strand, within IAI47_03100 at 642.516 kb on + strand, within IAI47_03100 at 642.517 kb on - strand, within IAI47_03100 at 642.580 kb on - strand, within IAI47_03100 at 642.581 kb on - strand, within IAI47_03100 at 642.581 kb on - strand, within IAI47_03100 at 642.670 kb on + strand, within IAI47_03100 at 642.670 kb on + strand, within IAI47_03100 at 642.670 kb on + strand, within IAI47_03100 at 642.671 kb on - strand, within IAI47_03100 at 642.671 kb on - strand, within IAI47_03100 at 642.671 kb on - strand, within IAI47_03100 at 642.708 kb on + strand, within IAI47_03100 at 642.786 kb on + strand, within IAI47_03100 at 642.808 kb on + strand, within IAI47_03100 at 642.808 kb on + strand, within IAI47_03100 at 642.864 kb on - strand, within IAI47_03100 at 642.864 kb on - strand, within IAI47_03100 at 642.867 kb on - strand, within IAI47_03100 at 642.867 kb on - strand, within IAI47_03100 at 642.867 kb on - strand, within IAI47_03100 at 642.867 kb on - strand, within IAI47_03100 at 642.897 kb on + strand, within IAI47_03100 at 642.902 kb on + strand, within IAI47_03100 at 642.902 kb on + strand, within IAI47_03100 at 642.903 kb on - strand, within IAI47_03100 at 642.903 kb on - strand, within IAI47_03100 at 642.903 kb on - strand, within IAI47_03100 at 642.959 kb on + strand, within IAI47_03100 at 642.959 kb on + strand, within IAI47_03100 at 642.960 kb on - strand, within IAI47_03100 at 642.984 kb on + strand, within IAI47_03100 at 642.984 kb on + strand, within IAI47_03100 at 642.984 kb on + strand, within IAI47_03100 at 642.984 kb on + strand, within IAI47_03100 at 642.984 kb on + strand, within IAI47_03100 at 642.985 kb on - strand, within IAI47_03100 at 642.996 kb on + strand, within IAI47_03100 at 642.997 kb on - strand, within IAI47_03100 at 643.005 kb on + strand, within IAI47_03100 at 643.005 kb on + strand, within IAI47_03100 at 643.005 kb on + strand, within IAI47_03100 at 643.005 kb on + strand, within IAI47_03100 at 643.005 kb on + strand, within IAI47_03100 at 643.006 kb on - strand, within IAI47_03100 at 643.006 kb on - strand, within IAI47_03100 at 643.006 kb on - strand, within IAI47_03100 at 643.006 kb on - strand, within IAI47_03100 at 643.006 kb on - strand, within IAI47_03100 at 643.020 kb on + strand, within IAI47_03100 at 643.050 kb on + strand, within IAI47_03100 at 643.069 kb on + strand at 643.069 kb on + strand at 643.069 kb on + strand at 643.069 kb on + strand at 643.079 kb on + strand at 643.080 kb on - strand at 643.080 kb on - strand at 643.080 kb on - strand at 643.080 kb on - strand at 643.080 kb on - strand at 643.080 kb on - strand at 643.080 kb on - strand at 643.153 kb on + strand at 643.154 kb on - strand at 643.158 kb on + strand at 643.158 kb on + strand at 643.158 kb on + strand at 643.159 kb on - strand at 643.159 kb on - strand at 643.159 kb on - strand at 643.159 kb on - strand at 643.159 kb on - strand at 643.198 kb on + strand at 643.198 kb on + strand at 643.198 kb on + strand at 643.198 kb on + strand at 643.199 kb on - strand at 643.199 kb on - strand at 643.199 kb on - strand at 643.199 kb on - strand at 643.199 kb on - strand at 643.199 kb on - strand at 643.270 kb on + strand at 643.270 kb on + strand at 643.271 kb on - strand at 643.271 kb on - strand at 643.271 kb on - strand at 643.271 kb on - strand at 643.332 kb on + strand at 643.351 kb on + strand at 643.372 kb on + strand at 644.850 kb on + strand at 644.850 kb on + strand at 644.850 kb on + strand at 644.851 kb on - strand at 644.882 kb on - strand at 644.882 kb on - strand at 644.882 kb on - strand at 644.882 kb on - strand at 644.882 kb on - strand at 644.882 kb on - strand at 644.882 kb on - strand at 644.884 kb on + strand at 644.884 kb on + strand at 644.884 kb on + strand at 644.884 kb on + strand at 644.884 kb on + strand at 644.885 kb on - strand at 644.885 kb on - strand at 644.885 kb on - strand at 644.885 kb on - strand at 644.885 kb on - strand at 644.885 kb on - strand at 644.885 kb on - strand at 644.891 kb on + strand at 644.891 kb on + strand at 644.891 kb on + strand at 644.891 kb on + strand at 644.892 kb on - strand at 644.892 kb on - strand at 644.892 kb on - strand at 645.285 kb on - strand at 645.307 kb on + strand at 645.308 kb on - strand at 645.308 kb on - strand at 645.308 kb on - strand at 645.315 kb on + strand at 645.315 kb on + strand at 645.315 kb on + strand at 645.315 kb on + strand at 645.315 kb on + strand at 645.315 kb on + strand at 645.316 kb on - strand at 645.316 kb on - strand at 645.316 kb on - strand at 645.316 kb on - strand at 645.316 kb on - strand at 645.318 kb on + strand at 645.318 kb on + strand at 645.318 kb on + strand at 645.318 kb on + strand at 645.318 kb on + strand at 645.319 kb on - strand at 645.319 kb on - strand at 645.319 kb on - strand at 645.319 kb on - strand at 645.325 kb on + strand at 645.325 kb on + strand at 645.325 kb on + strand at 645.325 kb on + strand at 645.326 kb on - strand at 645.326 kb on - strand at 645.326 kb on - strand at 645.326 kb on - strand at 645.331 kb on + strand at 645.331 kb on + strand at 645.331 kb on + strand at 645.331 kb on + strand at 645.331 kb on + strand at 645.331 kb on + strand at 645.331 kb on + strand at 645.332 kb on - strand at 645.332 kb on - strand at 645.332 kb on - strand at 645.332 kb on - strand at 645.353 kb on - strand at 645.396 kb on + strand at 645.428 kb on + strand at 645.430 kb on + strand at 645.430 kb on + strand at 645.430 kb on + strand at 645.430 kb on + strand at 645.430 kb on + strand at 645.658 kb on + strand at 645.658 kb on + strand at 645.658 kb on + strand at 645.658 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 642,477 + IAI47_03100 0.70 -0.2 642,477 + IAI47_03100 0.70 +1.1 642,477 + IAI47_03100 0.70 -1.6 642,477 + IAI47_03100 0.70 -0.1 642,477 + IAI47_03100 0.70 -0.2 642,477 + IAI47_03100 0.70 -1.6 642,477 + IAI47_03100 0.70 +0.4 642,477 + IAI47_03100 0.70 -0.9 642,478 - IAI47_03100 0.70 +0.2 642,478 - IAI47_03100 0.70 +0.2 642,478 - IAI47_03100 0.70 -1.0 642,485 + IAI47_03100 0.70 +0.5 642,485 + IAI47_03100 0.70 -0.1 642,485 + IAI47_03100 0.70 -1.6 642,486 - IAI47_03100 0.70 -0.1 642,486 - IAI47_03100 0.70 -0.9 642,486 - IAI47_03100 0.70 -0.3 642,486 - IAI47_03100 0.70 +0.9 642,486 - IAI47_03100 0.70 -0.2 642,486 - IAI47_03100 0.70 -0.6 642,494 - IAI47_03100 0.70 -1.2 642,516 + IAI47_03100 0.71 +0.5 642,516 + IAI47_03100 0.71 +1.2 642,516 + IAI47_03100 0.71 -1.2 642,517 - IAI47_03100 0.71 +0.4 642,580 - IAI47_03100 0.73 -0.2 642,581 - IAI47_03100 0.73 -0.5 642,581 - IAI47_03100 0.73 -0.4 642,670 + IAI47_03100 0.76 -0.2 642,670 + IAI47_03100 0.76 +0.7 642,670 + IAI47_03100 0.76 -1.6 642,671 - IAI47_03100 0.76 +0.4 642,671 - IAI47_03100 0.76 +0.0 642,671 - IAI47_03100 0.76 +0.4 642,708 + IAI47_03100 0.78 -2.0 642,786 + IAI47_03100 0.80 -0.6 642,808 + IAI47_03100 0.81 -1.8 642,808 + IAI47_03100 0.81 +0.5 642,864 - IAI47_03100 0.83 -0.1 642,864 - IAI47_03100 0.83 -1.2 642,867 - IAI47_03100 0.83 +0.4 642,867 - IAI47_03100 0.83 +0.3 642,867 - IAI47_03100 0.83 +0.6 642,867 - IAI47_03100 0.83 -0.6 642,897 + IAI47_03100 0.84 +0.1 642,902 + IAI47_03100 0.84 -0.8 642,902 + IAI47_03100 0.84 -1.5 642,903 - IAI47_03100 0.85 -0.1 642,903 - IAI47_03100 0.85 -1.3 642,903 - IAI47_03100 0.85 +0.9 642,959 + IAI47_03100 0.86 -0.1 642,959 + IAI47_03100 0.86 -1.2 642,960 - IAI47_03100 0.87 +1.1 642,984 + IAI47_03100 0.87 +1.0 642,984 + IAI47_03100 0.87 -0.5 642,984 + IAI47_03100 0.87 +1.5 642,984 + IAI47_03100 0.87 -1.2 642,984 + IAI47_03100 0.87 +0.1 642,985 - IAI47_03100 0.87 -0.6 642,996 + IAI47_03100 0.88 -2.2 642,997 - IAI47_03100 0.88 -0.7 643,005 + IAI47_03100 0.88 +1.0 643,005 + IAI47_03100 0.88 -0.6 643,005 + IAI47_03100 0.88 +0.4 643,005 + IAI47_03100 0.88 +1.0 643,005 + IAI47_03100 0.88 -0.3 643,006 - IAI47_03100 0.88 -0.3 643,006 - IAI47_03100 0.88 -1.0 643,006 - IAI47_03100 0.88 -1.3 643,006 - IAI47_03100 0.88 +2.4 643,006 - IAI47_03100 0.88 -0.6 643,020 + IAI47_03100 0.89 -0.1 643,050 + IAI47_03100 0.90 -2.1 643,069 + +0.9 643,069 + -1.1 643,069 + -0.2 643,069 + -0.7 643,079 + +0.2 643,080 - -0.4 643,080 - +0.4 643,080 - -1.9 643,080 - -0.6 643,080 - -1.3 643,080 - -1.6 643,080 - -0.2 643,153 + +1.1 643,154 - -1.0 643,158 + -1.1 643,158 + -1.4 643,158 + -1.4 643,159 - -0.6 643,159 - -1.1 643,159 - +0.4 643,159 - +1.5 643,159 - -1.4 643,198 + -0.5 643,198 + -1.1 643,198 + -0.6 643,198 + +1.2 643,199 - -0.3 643,199 - +0.2 643,199 - -0.2 643,199 - +1.4 643,199 - -0.9 643,199 - -2.2 643,270 + +1.4 643,270 + +0.4 643,271 - +0.7 643,271 - -1.1 643,271 - -0.6 643,271 - +0.0 643,332 + -0.3 643,351 + +0.4 643,372 + -0.4 644,850 + -0.8 644,850 + +0.8 644,850 + -0.1 644,851 - +1.2 644,882 - -1.5 644,882 - +0.2 644,882 - -2.0 644,882 - +1.4 644,882 - +0.4 644,882 - +0.7 644,882 - +0.9 644,884 + +0.1 644,884 + +0.4 644,884 + +0.6 644,884 + -0.2 644,884 + -0.8 644,885 - +1.1 644,885 - +0.9 644,885 - -0.6 644,885 - -0.9 644,885 - +0.2 644,885 - -0.1 644,885 - +2.7 644,891 + +1.9 644,891 + -1.4 644,891 + -0.5 644,891 + +1.9 644,892 - +0.2 644,892 - -1.0 644,892 - -1.1 645,285 - -0.3 645,307 + +1.4 645,308 - +0.2 645,308 - +0.4 645,308 - +1.8 645,315 + +0.4 645,315 + +0.5 645,315 + +1.7 645,315 + +1.4 645,315 + +0.2 645,315 + +1.0 645,316 - +1.1 645,316 - -0.6 645,316 - +0.5 645,316 - +0.1 645,316 - -0.8 645,318 + -1.2 645,318 + -1.2 645,318 + -0.2 645,318 + -0.3 645,318 + +2.7 645,319 - +0.2 645,319 - +0.2 645,319 - +1.0 645,319 - -1.2 645,325 + -0.0 645,325 + +0.8 645,325 + -0.1 645,325 + +1.7 645,326 - -0.1 645,326 - +0.6 645,326 - +0.4 645,326 - +1.5 645,331 + -0.6 645,331 + +0.0 645,331 + +0.4 645,331 + +0.2 645,331 + -0.5 645,331 + +1.7 645,331 + +1.1 645,332 - -0.6 645,332 - -0.2 645,332 - -0.2 645,332 - -1.3 645,353 - -0.2 645,396 + -0.0 645,428 + -0.5 645,430 + +0.6 645,430 + -0.1 645,430 + +0.4 645,430 + +1.4 645,430 + +1.4 645,658 + -0.1 645,658 + +0.1 645,658 + -0.5 645,658 + -0.5
Or see this region's nucleotide sequence