Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_02965 and IAI47_02970 are separated by 569 nucleotides IAI47_02970 and IAI47_02975 overlap by 4 nucleotides
IAI47_02965: IAI47_02965 - 5'-nucleotidase, lipoprotein e(P4) family, at 612,409 to 613,218
_02965
IAI47_02970: IAI47_02970 - carbonic anhydrase, at 613,788 to 614,423
_02970
IAI47_02975: IAI47_02975 - SulP family inorganic anion transporter, at 614,420 to 615,895
_02975
Position (kb) 613
614
615 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 612.820 kb on + strand, within IAI47_02965 at 612.820 kb on + strand, within IAI47_02965 at 612.820 kb on + strand, within IAI47_02965 at 612.820 kb on + strand, within IAI47_02965 at 612.820 kb on + strand, within IAI47_02965 at 612.821 kb on - strand, within IAI47_02965 at 612.821 kb on - strand, within IAI47_02965 at 612.847 kb on + strand, within IAI47_02965 at 612.847 kb on + strand, within IAI47_02965 at 612.847 kb on + strand, within IAI47_02965 at 612.848 kb on - strand, within IAI47_02965 at 612.848 kb on - strand, within IAI47_02965 at 612.848 kb on - strand, within IAI47_02965 at 612.848 kb on - strand, within IAI47_02965 at 612.867 kb on + strand, within IAI47_02965 at 612.867 kb on + strand, within IAI47_02965 at 612.868 kb on - strand, within IAI47_02965 at 612.908 kb on + strand, within IAI47_02965 at 612.908 kb on + strand, within IAI47_02965 at 612.908 kb on + strand, within IAI47_02965 at 612.908 kb on + strand, within IAI47_02965 at 612.908 kb on + strand, within IAI47_02965 at 612.918 kb on + strand, within IAI47_02965 at 612.919 kb on - strand, within IAI47_02965 at 612.933 kb on + strand, within IAI47_02965 at 612.934 kb on - strand, within IAI47_02965 at 612.971 kb on - strand, within IAI47_02965 at 612.972 kb on + strand, within IAI47_02965 at 612.972 kb on + strand, within IAI47_02965 at 612.972 kb on + strand, within IAI47_02965 at 612.973 kb on - strand, within IAI47_02965 at 612.985 kb on + strand, within IAI47_02965 at 612.985 kb on + strand, within IAI47_02965 at 612.986 kb on - strand, within IAI47_02965 at 612.986 kb on - strand, within IAI47_02965 at 613.029 kb on + strand, within IAI47_02965 at 613.029 kb on + strand, within IAI47_02965 at 613.029 kb on + strand, within IAI47_02965 at 613.030 kb on - strand, within IAI47_02965 at 613.092 kb on + strand, within IAI47_02965 at 613.100 kb on + strand, within IAI47_02965 at 613.100 kb on + strand, within IAI47_02965 at 613.100 kb on + strand, within IAI47_02965 at 613.100 kb on + strand, within IAI47_02965 at 613.101 kb on - strand, within IAI47_02965 at 613.101 kb on - strand, within IAI47_02965 at 613.104 kb on + strand, within IAI47_02965 at 613.105 kb on - strand, within IAI47_02965 at 613.115 kb on - strand, within IAI47_02965 at 613.152 kb on + strand at 613.152 kb on + strand at 613.152 kb on + strand at 613.152 kb on + strand at 613.152 kb on + strand at 613.152 kb on + strand at 613.152 kb on + strand at 613.152 kb on + strand at 613.152 kb on + strand at 613.152 kb on + strand at 613.153 kb on - strand at 613.153 kb on - strand at 613.153 kb on - strand at 613.153 kb on - strand at 613.153 kb on - strand at 613.153 kb on - strand at 613.153 kb on - strand at 613.153 kb on - strand at 613.153 kb on - strand at 613.153 kb on - strand at 613.213 kb on - strand at 613.217 kb on - strand at 613.257 kb on + strand at 613.257 kb on + strand at 613.257 kb on + strand at 613.257 kb on + strand at 613.258 kb on - strand at 613.258 kb on - strand at 613.261 kb on - strand at 613.261 kb on - strand at 613.261 kb on - strand at 613.261 kb on - strand at 613.270 kb on + strand at 613.271 kb on - strand at 613.274 kb on + strand at 613.274 kb on + strand at 613.274 kb on + strand at 613.274 kb on + strand at 613.274 kb on + strand at 613.275 kb on - strand at 613.275 kb on - strand at 613.275 kb on - strand at 613.275 kb on - strand at 613.278 kb on + strand at 613.278 kb on + strand at 613.278 kb on + strand at 613.310 kb on + strand at 613.332 kb on + strand at 613.332 kb on + strand at 613.333 kb on - strand at 613.340 kb on + strand at 613.340 kb on + strand at 613.346 kb on + strand at 613.346 kb on + strand at 613.346 kb on + strand at 613.346 kb on + strand at 613.347 kb on - strand at 613.347 kb on - strand at 613.347 kb on - strand at 613.347 kb on - strand at 613.347 kb on - strand at 613.348 kb on + strand at 613.348 kb on + strand at 613.348 kb on + strand at 613.348 kb on + strand at 613.348 kb on + strand at 613.348 kb on + strand at 613.348 kb on + strand at 613.349 kb on - strand at 613.349 kb on - strand at 613.349 kb on - strand at 613.349 kb on - strand at 613.349 kb on - strand at 613.349 kb on - strand at 613.361 kb on + strand at 613.361 kb on + strand at 613.361 kb on + strand at 613.361 kb on + strand at 613.361 kb on + strand at 613.362 kb on - strand at 613.362 kb on - strand at 613.362 kb on - strand at 613.363 kb on + strand at 613.363 kb on + strand at 613.363 kb on + strand at 613.395 kb on + strand at 613.396 kb on - strand at 613.407 kb on + strand at 613.442 kb on - strand at 613.465 kb on + strand at 613.475 kb on - strand at 613.479 kb on - strand at 613.498 kb on - strand at 613.523 kb on + strand at 613.645 kb on + strand at 613.646 kb on - strand at 613.677 kb on - strand at 613.677 kb on - strand at 613.703 kb on + strand at 613.704 kb on - strand at 613.726 kb on + strand at 613.726 kb on + strand at 613.726 kb on + strand at 613.726 kb on + strand at 613.726 kb on + strand at 613.726 kb on + strand at 613.727 kb on - strand at 613.727 kb on - strand at 613.778 kb on + strand at 613.778 kb on + strand at 613.779 kb on - strand at 613.779 kb on - strand at 613.779 kb on - strand at 613.805 kb on + strand at 613.805 kb on + strand at 613.805 kb on + strand at 613.806 kb on - strand at 613.806 kb on - strand at 613.806 kb on - strand at 613.806 kb on - strand at 613.806 kb on - strand at 613.813 kb on + strand at 613.813 kb on + strand at 613.813 kb on + strand at 613.814 kb on - strand at 613.814 kb on - strand at 613.814 kb on - strand at 613.814 kb on - strand at 613.816 kb on + strand at 613.856 kb on + strand, within IAI47_02970 at 613.866 kb on + strand, within IAI47_02970 at 613.912 kb on + strand, within IAI47_02970 at 613.913 kb on - strand, within IAI47_02970 at 613.913 kb on - strand, within IAI47_02970 at 613.913 kb on - strand, within IAI47_02970 at 613.926 kb on - strand, within IAI47_02970 at 613.926 kb on - strand, within IAI47_02970 at 613.945 kb on + strand, within IAI47_02970 at 613.945 kb on + strand, within IAI47_02970 at 613.945 kb on + strand, within IAI47_02970 at 613.945 kb on + strand, within IAI47_02970 at 613.946 kb on - strand, within IAI47_02970 at 613.946 kb on - strand, within IAI47_02970 at 613.948 kb on + strand, within IAI47_02970 at 613.978 kb on + strand, within IAI47_02970 at 613.978 kb on + strand, within IAI47_02970 at 613.978 kb on + strand, within IAI47_02970 at 613.979 kb on - strand, within IAI47_02970 at 613.979 kb on - strand, within IAI47_02970 at 613.979 kb on - strand, within IAI47_02970 at 613.979 kb on - strand, within IAI47_02970 at 613.985 kb on + strand, within IAI47_02970 at 613.985 kb on + strand, within IAI47_02970 at 613.985 kb on + strand, within IAI47_02970 at 613.985 kb on + strand, within IAI47_02970 at 613.985 kb on + strand, within IAI47_02970 at 613.985 kb on + strand, within IAI47_02970 at 613.985 kb on + strand, within IAI47_02970 at 613.985 kb on + strand, within IAI47_02970 at 613.986 kb on - strand, within IAI47_02970 at 613.986 kb on - strand, within IAI47_02970 at 613.986 kb on - strand, within IAI47_02970 at 613.986 kb on - strand, within IAI47_02970 at 613.986 kb on - strand, within IAI47_02970 at 613.989 kb on - strand, within IAI47_02970 at 614.033 kb on - strand, within IAI47_02970 at 614.033 kb on - strand, within IAI47_02970 at 614.040 kb on + strand, within IAI47_02970 at 614.040 kb on + strand, within IAI47_02970 at 614.040 kb on + strand, within IAI47_02970 at 614.040 kb on + strand, within IAI47_02970 at 614.040 kb on + strand, within IAI47_02970 at 614.041 kb on - strand, within IAI47_02970 at 614.041 kb on - strand, within IAI47_02970 at 614.041 kb on - strand, within IAI47_02970 at 614.041 kb on - strand, within IAI47_02970 at 614.079 kb on - strand, within IAI47_02970 at 614.089 kb on - strand, within IAI47_02970 at 614.089 kb on - strand, within IAI47_02970 at 614.089 kb on - strand, within IAI47_02970 at 614.104 kb on + strand, within IAI47_02970 at 614.105 kb on - strand, within IAI47_02970 at 614.105 kb on - strand, within IAI47_02970 at 614.168 kb on + strand, within IAI47_02970 at 614.168 kb on + strand, within IAI47_02970 at 614.168 kb on + strand, within IAI47_02970 at 614.168 kb on + strand, within IAI47_02970 at 614.169 kb on - strand, within IAI47_02970 at 614.169 kb on - strand, within IAI47_02970 at 614.169 kb on - strand, within IAI47_02970 at 614.169 kb on - strand, within IAI47_02970 at 614.190 kb on - strand, within IAI47_02970 at 614.190 kb on - strand, within IAI47_02970 at 614.358 kb on + strand, within IAI47_02970 at 614.358 kb on + strand, within IAI47_02970 at 614.419 kb on + strand at 614.419 kb on + strand at 614.419 kb on + strand at 614.419 kb on + strand at 614.419 kb on + strand at 614.419 kb on + strand at 614.420 kb on - strand at 614.420 kb on - strand at 614.420 kb on - strand at 614.420 kb on - strand at 614.432 kb on - strand at 614.649 kb on + strand, within IAI47_02975 at 614.650 kb on - strand, within IAI47_02975 at 614.650 kb on - strand, within IAI47_02975 at 614.683 kb on + strand, within IAI47_02975 at 614.684 kb on - strand, within IAI47_02975 at 614.684 kb on - strand, within IAI47_02975 at 614.734 kb on + strand, within IAI47_02975 at 614.734 kb on + strand, within IAI47_02975 at 614.734 kb on + strand, within IAI47_02975 at 614.895 kb on + strand, within IAI47_02975 at 614.895 kb on + strand, within IAI47_02975 at 614.896 kb on - strand, within IAI47_02975 at 614.896 kb on - strand, within IAI47_02975 at 614.919 kb on + strand, within IAI47_02975 at 614.919 kb on + strand, within IAI47_02975 at 614.919 kb on + strand, within IAI47_02975 at 614.919 kb on + strand, within IAI47_02975 at 614.920 kb on - strand, within IAI47_02975 at 614.920 kb on - strand, within IAI47_02975 at 614.920 kb on - strand, within IAI47_02975 at 614.920 kb on - strand, within IAI47_02975 at 615.168 kb on + strand, within IAI47_02975 at 615.169 kb on - strand, within IAI47_02975 at 615.169 kb on - strand, within IAI47_02975 at 615.394 kb on - strand, within IAI47_02975 at 615.394 kb on - strand, within IAI47_02975 at 615.394 kb on - strand, within IAI47_02975 at 615.394 kb on - strand, within IAI47_02975 at 615.421 kb on + strand, within IAI47_02975 at 615.422 kb on - strand, within IAI47_02975
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 612,820 + IAI47_02965 0.51 +0.1 612,820 + IAI47_02965 0.51 +2.3 612,820 + IAI47_02965 0.51 +0.5 612,820 + IAI47_02965 0.51 -0.2 612,820 + IAI47_02965 0.51 +1.1 612,821 - IAI47_02965 0.51 +0.1 612,821 - IAI47_02965 0.51 +0.3 612,847 + IAI47_02965 0.54 -0.3 612,847 + IAI47_02965 0.54 +0.2 612,847 + IAI47_02965 0.54 +0.3 612,848 - IAI47_02965 0.54 +0.6 612,848 - IAI47_02965 0.54 +1.5 612,848 - IAI47_02965 0.54 -1.2 612,848 - IAI47_02965 0.54 +1.8 612,867 + IAI47_02965 0.57 +1.3 612,867 + IAI47_02965 0.57 +0.0 612,868 - IAI47_02965 0.57 -0.8 612,908 + IAI47_02965 0.62 +0.8 612,908 + IAI47_02965 0.62 +1.3 612,908 + IAI47_02965 0.62 +0.1 612,908 + IAI47_02965 0.62 -0.8 612,908 + IAI47_02965 0.62 +1.9 612,918 + IAI47_02965 0.63 +0.5 612,919 - IAI47_02965 0.63 -1.2 612,933 + IAI47_02965 0.65 -0.2 612,934 - IAI47_02965 0.65 -0.1 612,971 - IAI47_02965 0.69 +0.3 612,972 + IAI47_02965 0.70 -1.7 612,972 + IAI47_02965 0.70 -1.2 612,972 + IAI47_02965 0.70 +0.3 612,973 - IAI47_02965 0.70 +0.9 612,985 + IAI47_02965 0.71 -0.0 612,985 + IAI47_02965 0.71 +1.3 612,986 - IAI47_02965 0.71 +0.3 612,986 - IAI47_02965 0.71 -0.3 613,029 + IAI47_02965 0.77 -1.0 613,029 + IAI47_02965 0.77 -0.3 613,029 + IAI47_02965 0.77 +0.0 613,030 - IAI47_02965 0.77 -1.0 613,092 + IAI47_02965 0.84 +0.3 613,100 + IAI47_02965 0.85 -0.7 613,100 + IAI47_02965 0.85 +1.3 613,100 + IAI47_02965 0.85 +1.8 613,100 + IAI47_02965 0.85 -2.8 613,101 - IAI47_02965 0.85 +1.0 613,101 - IAI47_02965 0.85 -0.8 613,104 + IAI47_02965 0.86 +0.0 613,105 - IAI47_02965 0.86 -0.1 613,115 - IAI47_02965 0.87 +0.1 613,152 + -1.8 613,152 + +1.6 613,152 + -1.8 613,152 + +0.4 613,152 + +0.3 613,152 + +1.6 613,152 + -1.7 613,152 + +0.8 613,152 + +0.5 613,152 + -3.1 613,153 - +3.5 613,153 - -0.2 613,153 - -0.5 613,153 - +0.2 613,153 - +0.4 613,153 - -1.7 613,153 - +1.1 613,153 - +0.0 613,153 - -0.1 613,153 - +0.6 613,213 - -1.1 613,217 - -0.8 613,257 + +0.2 613,257 + -0.1 613,257 + +0.7 613,257 + -2.7 613,258 - -0.0 613,258 - -0.1 613,261 - +1.1 613,261 - +0.9 613,261 - -1.0 613,261 - -0.5 613,270 + +1.0 613,271 - -0.1 613,274 + -0.5 613,274 + +0.8 613,274 + -0.7 613,274 + -0.8 613,274 + -0.1 613,275 - +0.2 613,275 - +1.3 613,275 - -0.8 613,275 - -0.9 613,278 + +0.8 613,278 + +0.0 613,278 + +0.1 613,310 + +0.2 613,332 + -0.2 613,332 + +1.3 613,333 - +1.1 613,340 + -0.5 613,340 + -0.3 613,346 + -0.1 613,346 + +0.6 613,346 + +0.3 613,346 + +2.8 613,347 - +1.3 613,347 - -1.4 613,347 - -0.0 613,347 - +1.3 613,347 - +0.8 613,348 + +0.8 613,348 + -0.1 613,348 + -0.2 613,348 + +1.6 613,348 + +0.3 613,348 + -2.7 613,348 + -0.4 613,349 - -1.1 613,349 - +0.9 613,349 - -1.7 613,349 - +1.1 613,349 - +1.3 613,349 - -0.4 613,361 + +0.9 613,361 + +0.5 613,361 + +1.5 613,361 + +0.7 613,361 + +1.3 613,362 - -1.7 613,362 - +0.3 613,362 - -1.7 613,363 + +0.9 613,363 + +0.0 613,363 + +0.7 613,395 + +0.3 613,396 - -0.5 613,407 + +0.9 613,442 - -0.7 613,465 + -1.2 613,475 - -0.4 613,479 - -0.2 613,498 - -1.0 613,523 + +0.2 613,645 + -0.2 613,646 - -0.6 613,677 - -1.4 613,677 - -1.1 613,703 + +1.6 613,704 - -0.4 613,726 + +1.0 613,726 + -1.6 613,726 + +1.2 613,726 + +0.0 613,726 + -0.8 613,726 + -0.4 613,727 - +0.4 613,727 - +0.7 613,778 + +0.4 613,778 + +0.2 613,779 - +0.8 613,779 - -0.4 613,779 - -0.6 613,805 + +1.2 613,805 + +0.4 613,805 + +0.9 613,806 - -1.6 613,806 - -0.6 613,806 - +1.2 613,806 - +1.4 613,806 - -1.2 613,813 + +0.2 613,813 + +1.0 613,813 + -0.2 613,814 - +0.6 613,814 - -1.2 613,814 - -2.2 613,814 - -0.8 613,816 + +1.2 613,856 + IAI47_02970 0.11 +1.0 613,866 + IAI47_02970 0.12 +0.9 613,912 + IAI47_02970 0.19 -1.6 613,913 - IAI47_02970 0.20 +1.3 613,913 - IAI47_02970 0.20 -0.3 613,913 - IAI47_02970 0.20 -0.2 613,926 - IAI47_02970 0.22 -0.3 613,926 - IAI47_02970 0.22 +2.9 613,945 + IAI47_02970 0.25 -1.0 613,945 + IAI47_02970 0.25 +1.4 613,945 + IAI47_02970 0.25 -0.6 613,945 + IAI47_02970 0.25 +0.4 613,946 - IAI47_02970 0.25 -0.6 613,946 - IAI47_02970 0.25 +0.0 613,948 + IAI47_02970 0.25 +1.0 613,978 + IAI47_02970 0.30 +1.9 613,978 + IAI47_02970 0.30 +0.9 613,978 + IAI47_02970 0.30 -1.9 613,979 - IAI47_02970 0.30 +0.8 613,979 - IAI47_02970 0.30 +3.2 613,979 - IAI47_02970 0.30 +0.6 613,979 - IAI47_02970 0.30 -0.3 613,985 + IAI47_02970 0.31 +0.1 613,985 + IAI47_02970 0.31 +1.5 613,985 + IAI47_02970 0.31 -1.6 613,985 + IAI47_02970 0.31 +0.5 613,985 + IAI47_02970 0.31 -1.2 613,985 + IAI47_02970 0.31 -0.4 613,985 + IAI47_02970 0.31 -1.2 613,985 + IAI47_02970 0.31 +0.4 613,986 - IAI47_02970 0.31 -0.6 613,986 - IAI47_02970 0.31 +0.0 613,986 - IAI47_02970 0.31 +0.2 613,986 - IAI47_02970 0.31 -1.3 613,986 - IAI47_02970 0.31 +1.6 613,989 - IAI47_02970 0.32 +0.7 614,033 - IAI47_02970 0.39 -0.0 614,033 - IAI47_02970 0.39 +1.2 614,040 + IAI47_02970 0.40 -0.5 614,040 + IAI47_02970 0.40 -0.1 614,040 + IAI47_02970 0.40 -0.2 614,040 + IAI47_02970 0.40 -0.6 614,040 + IAI47_02970 0.40 -1.5 614,041 - IAI47_02970 0.40 +0.7 614,041 - IAI47_02970 0.40 +0.9 614,041 - IAI47_02970 0.40 -0.6 614,041 - IAI47_02970 0.40 +0.8 614,079 - IAI47_02970 0.46 -0.0 614,089 - IAI47_02970 0.47 -1.6 614,089 - IAI47_02970 0.47 +1.0 614,089 - IAI47_02970 0.47 -0.6 614,104 + IAI47_02970 0.50 -0.0 614,105 - IAI47_02970 0.50 -0.1 614,105 - IAI47_02970 0.50 -0.1 614,168 + IAI47_02970 0.60 -0.8 614,168 + IAI47_02970 0.60 -0.0 614,168 + IAI47_02970 0.60 +1.6 614,168 + IAI47_02970 0.60 -0.9 614,169 - IAI47_02970 0.60 +1.5 614,169 - IAI47_02970 0.60 -0.5 614,169 - IAI47_02970 0.60 -0.2 614,169 - IAI47_02970 0.60 -1.2 614,190 - IAI47_02970 0.63 +0.6 614,190 - IAI47_02970 0.63 -1.8 614,358 + IAI47_02970 0.90 +1.0 614,358 + IAI47_02970 0.90 -0.3 614,419 + +0.1 614,419 + -0.5 614,419 + +0.1 614,419 + -2.2 614,419 + -1.5 614,419 + +0.2 614,420 - -0.5 614,420 - -0.6 614,420 - -1.6 614,420 - -0.6 614,432 - -0.9 614,649 + IAI47_02975 0.16 +0.4 614,650 - IAI47_02975 0.16 -3.0 614,650 - IAI47_02975 0.16 -1.1 614,683 + IAI47_02975 0.18 +1.2 614,684 - IAI47_02975 0.18 +1.6 614,684 - IAI47_02975 0.18 -1.2 614,734 + IAI47_02975 0.21 +0.4 614,734 + IAI47_02975 0.21 +1.9 614,734 + IAI47_02975 0.21 -0.6 614,895 + IAI47_02975 0.32 +2.7 614,895 + IAI47_02975 0.32 -0.5 614,896 - IAI47_02975 0.32 +0.9 614,896 - IAI47_02975 0.32 +1.7 614,919 + IAI47_02975 0.34 +1.7 614,919 + IAI47_02975 0.34 +1.2 614,919 + IAI47_02975 0.34 -0.3 614,919 + IAI47_02975 0.34 -1.0 614,920 - IAI47_02975 0.34 +0.7 614,920 - IAI47_02975 0.34 -0.2 614,920 - IAI47_02975 0.34 -1.4 614,920 - IAI47_02975 0.34 -0.6 615,168 + IAI47_02975 0.51 +0.4 615,169 - IAI47_02975 0.51 +1.4 615,169 - IAI47_02975 0.51 +0.7 615,394 - IAI47_02975 0.66 +0.5 615,394 - IAI47_02975 0.66 +1.2 615,394 - IAI47_02975 0.66 +1.9 615,394 - IAI47_02975 0.66 +0.7 615,421 + IAI47_02975 0.68 +0.1 615,422 - IAI47_02975 0.68 +1.2
Or see this region's nucleotide sequence