Strain Fitness in Pantoea sp. MT58 around IAI47_02410

Experiment: Ying_sugar7 rep B; time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI47_02405 and IAI47_02410 are separated by 11 nucleotidesIAI47_02410 and IAI47_02415 are separated by 25 nucleotidesIAI47_02415 and IAI47_02420 are separated by 232 nucleotides IAI47_02405: IAI47_02405 - acetyl-CoA carboxylase biotin carboxylase subunit, at 495,133 to 496,482 _02405 IAI47_02410: IAI47_02410 - acetyl-CoA carboxylase biotin carboxyl carrier protein, at 496,494 to 496,955 _02410 IAI47_02415: IAI47_02415 - type II 3-dehydroquinate dehydratase, at 496,981 to 497,433 _02415 IAI47_02420: IAI47_02420 - protein-methionine-sulfoxide reductase heme-binding subunit MsrQ, at 497,666 to 498,271 _02420 Position (kb) 496 497Strain fitness (log2 ratio) -2 -1 0 1 2at 497.476 kb on - strandat 497.533 kb on + strandat 497.533 kb on + strandat 497.534 kb on - strandat 497.534 kb on - strandat 497.546 kb on + strandat 497.587 kb on - strandat 497.587 kb on - strandat 497.608 kb on + strandat 497.608 kb on + strandat 497.609 kb on - strandat 497.708 kb on + strandat 497.709 kb on - strandat 497.715 kb on - strandat 497.733 kb on + strand, within IAI47_02420at 497.733 kb on + strand, within IAI47_02420at 497.733 kb on + strand, within IAI47_02420at 497.733 kb on + strand, within IAI47_02420at 497.733 kb on + strand, within IAI47_02420at 497.733 kb on + strand, within IAI47_02420at 497.733 kb on + strand, within IAI47_02420at 497.733 kb on + strand, within IAI47_02420at 497.734 kb on - strand, within IAI47_02420at 497.734 kb on - strand, within IAI47_02420at 497.734 kb on - strand, within IAI47_02420at 497.734 kb on - strand, within IAI47_02420at 497.737 kb on + strand, within IAI47_02420at 497.737 kb on + strand, within IAI47_02420at 497.737 kb on + strand, within IAI47_02420at 497.737 kb on + strand, within IAI47_02420at 497.737 kb on + strand, within IAI47_02420at 497.737 kb on + strand, within IAI47_02420at 497.737 kb on + strand, within IAI47_02420at 497.737 kb on + strand, within IAI47_02420at 497.737 kb on + strand, within IAI47_02420at 497.737 kb on + strand, within IAI47_02420at 497.737 kb on + strand, within IAI47_02420at 497.737 kb on + strand, within IAI47_02420at 497.737 kb on + strand, within IAI47_02420at 497.737 kb on + strand, within IAI47_02420at 497.738 kb on - strand, within IAI47_02420at 497.738 kb on - strand, within IAI47_02420at 497.738 kb on - strand, within IAI47_02420at 497.738 kb on - strand, within IAI47_02420at 497.738 kb on - strand, within IAI47_02420at 497.738 kb on - strand, within IAI47_02420at 497.738 kb on - strand, within IAI47_02420at 497.738 kb on - strand, within IAI47_02420at 497.738 kb on - strand, within IAI47_02420at 497.738 kb on - strand, within IAI47_02420at 497.738 kb on - strand, within IAI47_02420at 497.738 kb on - strand, within IAI47_02420at 497.773 kb on + strand, within IAI47_02420at 497.773 kb on + strand, within IAI47_02420at 497.773 kb on + strand, within IAI47_02420at 497.773 kb on + strand, within IAI47_02420at 497.773 kb on + strand, within IAI47_02420at 497.773 kb on + strand, within IAI47_02420at 497.773 kb on + strand, within IAI47_02420at 497.774 kb on - strand, within IAI47_02420at 497.774 kb on - strand, within IAI47_02420at 497.774 kb on - strand, within IAI47_02420at 497.774 kb on - strand, within IAI47_02420at 497.774 kb on - strand, within IAI47_02420at 497.776 kb on - strand, within IAI47_02420at 497.776 kb on - strand, within IAI47_02420at 497.776 kb on - strand, within IAI47_02420at 497.776 kb on - strand, within IAI47_02420at 497.805 kb on + strand, within IAI47_02420at 497.805 kb on + strand, within IAI47_02420at 497.805 kb on + strand, within IAI47_02420at 497.806 kb on - strand, within IAI47_02420at 497.806 kb on - strand, within IAI47_02420at 497.806 kb on - strand, within IAI47_02420at 497.806 kb on - strand, within IAI47_02420at 497.806 kb on - strand, within IAI47_02420at 497.836 kb on + strand, within IAI47_02420at 497.837 kb on - strand, within IAI47_02420at 497.885 kb on + strand, within IAI47_02420at 497.885 kb on + strand, within IAI47_02420at 497.885 kb on + strand, within IAI47_02420at 497.885 kb on + strand, within IAI47_02420at 497.886 kb on - strand, within IAI47_02420at 497.888 kb on + strand, within IAI47_02420at 497.888 kb on + strand, within IAI47_02420at 497.888 kb on + strand, within IAI47_02420at 497.889 kb on - strand, within IAI47_02420at 497.889 kb on - strand, within IAI47_02420at 497.889 kb on - strand, within IAI47_02420at 497.902 kb on + strand, within IAI47_02420at 497.902 kb on + strand, within IAI47_02420at 497.902 kb on + strand, within IAI47_02420at 497.903 kb on - strand, within IAI47_02420at 497.903 kb on - strand, within IAI47_02420at 497.903 kb on - strand, within IAI47_02420at 497.905 kb on + strand, within IAI47_02420at 497.906 kb on - strand, within IAI47_02420at 497.906 kb on - strand, within IAI47_02420at 497.906 kb on - strand, within IAI47_02420at 497.919 kb on + strand, within IAI47_02420at 497.919 kb on + strand, within IAI47_02420at 497.919 kb on + strand, within IAI47_02420at 497.920 kb on - strand, within IAI47_02420at 497.920 kb on - strand, within IAI47_02420

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3
remove
497,476 - +0.3
497,533 + +0.3
497,533 + -1.7
497,534 - +0.6
497,534 - +0.0
497,546 + -0.8
497,587 - -0.2
497,587 - +0.8
497,608 + -0.7
497,608 + +0.7
497,609 - -0.1
497,708 + +0.1
497,709 - +0.8
497,715 - +0.8
497,733 + IAI47_02420 0.11 +1.0
497,733 + IAI47_02420 0.11 +1.2
497,733 + IAI47_02420 0.11 -1.2
497,733 + IAI47_02420 0.11 +0.6
497,733 + IAI47_02420 0.11 -1.1
497,733 + IAI47_02420 0.11 +1.3
497,733 + IAI47_02420 0.11 -0.6
497,733 + IAI47_02420 0.11 +0.5
497,734 - IAI47_02420 0.11 -0.1
497,734 - IAI47_02420 0.11 -2.2
497,734 - IAI47_02420 0.11 +0.3
497,734 - IAI47_02420 0.11 -0.5
497,737 + IAI47_02420 0.12 +0.9
497,737 + IAI47_02420 0.12 +0.7
497,737 + IAI47_02420 0.12 -0.4
497,737 + IAI47_02420 0.12 -0.7
497,737 + IAI47_02420 0.12 +2.3
497,737 + IAI47_02420 0.12 -0.8
497,737 + IAI47_02420 0.12 +1.1
497,737 + IAI47_02420 0.12 +0.0
497,737 + IAI47_02420 0.12 -0.5
497,737 + IAI47_02420 0.12 +0.1
497,737 + IAI47_02420 0.12 +1.7
497,737 + IAI47_02420 0.12 +1.5
497,737 + IAI47_02420 0.12 +0.8
497,737 + IAI47_02420 0.12 +1.2
497,738 - IAI47_02420 0.12 +0.5
497,738 - IAI47_02420 0.12 -0.4
497,738 - IAI47_02420 0.12 -1.3
497,738 - IAI47_02420 0.12 -2.0
497,738 - IAI47_02420 0.12 -0.0
497,738 - IAI47_02420 0.12 +0.2
497,738 - IAI47_02420 0.12 +0.5
497,738 - IAI47_02420 0.12 -1.4
497,738 - IAI47_02420 0.12 -1.4
497,738 - IAI47_02420 0.12 +0.7
497,738 - IAI47_02420 0.12 -0.2
497,738 - IAI47_02420 0.12 +0.9
497,773 + IAI47_02420 0.18 +0.0
497,773 + IAI47_02420 0.18 +0.3
497,773 + IAI47_02420 0.18 +2.3
497,773 + IAI47_02420 0.18 -0.1
497,773 + IAI47_02420 0.18 +1.0
497,773 + IAI47_02420 0.18 +0.3
497,773 + IAI47_02420 0.18 +0.9
497,774 - IAI47_02420 0.18 -1.0
497,774 - IAI47_02420 0.18 -2.0
497,774 - IAI47_02420 0.18 +0.4
497,774 - IAI47_02420 0.18 +0.2
497,774 - IAI47_02420 0.18 +0.0
497,776 - IAI47_02420 0.18 -0.2
497,776 - IAI47_02420 0.18 +0.1
497,776 - IAI47_02420 0.18 +1.3
497,776 - IAI47_02420 0.18 +0.2
497,805 + IAI47_02420 0.23 -0.7
497,805 + IAI47_02420 0.23 +1.3
497,805 + IAI47_02420 0.23 -1.7
497,806 - IAI47_02420 0.23 +0.6
497,806 - IAI47_02420 0.23 +0.8
497,806 - IAI47_02420 0.23 +1.3
497,806 - IAI47_02420 0.23 +0.3
497,806 - IAI47_02420 0.23 -1.5
497,836 + IAI47_02420 0.28 -0.7
497,837 - IAI47_02420 0.28 +1.3
497,885 + IAI47_02420 0.36 +1.9
497,885 + IAI47_02420 0.36 -0.1
497,885 + IAI47_02420 0.36 +0.6
497,885 + IAI47_02420 0.36 +0.1
497,886 - IAI47_02420 0.36 -0.7
497,888 + IAI47_02420 0.37 +0.3
497,888 + IAI47_02420 0.37 -0.7
497,888 + IAI47_02420 0.37 -0.1
497,889 - IAI47_02420 0.37 +0.7
497,889 - IAI47_02420 0.37 +0.2
497,889 - IAI47_02420 0.37 +0.3
497,902 + IAI47_02420 0.39 +0.9
497,902 + IAI47_02420 0.39 +0.0
497,902 + IAI47_02420 0.39 +1.1
497,903 - IAI47_02420 0.39 -0.1
497,903 - IAI47_02420 0.39 -0.7
497,903 - IAI47_02420 0.39 +0.9
497,905 + IAI47_02420 0.39 +0.6
497,906 - IAI47_02420 0.40 +0.3
497,906 - IAI47_02420 0.40 -0.8
497,906 - IAI47_02420 0.40 +0.3
497,919 + IAI47_02420 0.42 -0.5
497,919 + IAI47_02420 0.42 +0.3
497,919 + IAI47_02420 0.42 -0.5
497,920 - IAI47_02420 0.42 +0.5
497,920 - IAI47_02420 0.42 -0.7

Or see this region's nucleotide sequence