Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_02395 and IAI47_02400 overlap by 11 nucleotides IAI47_02400 and IAI47_02405 are separated by 71 nucleotides IAI47_02405 and IAI47_02410 are separated by 11 nucleotides IAI47_02410 and IAI47_02415 are separated by 25 nucleotides
IAI47_02395: IAI47_02395 - sodium/pantothenate symporter, at 493,384 to 494,829
_02395
IAI47_02400: IAI47_02400 - YhdT family protein, at 494,819 to 495,061
_02400
IAI47_02405: IAI47_02405 - acetyl-CoA carboxylase biotin carboxylase subunit, at 495,133 to 496,482
_02405
IAI47_02410: IAI47_02410 - acetyl-CoA carboxylase biotin carboxyl carrier protein, at 496,494 to 496,955
_02410
IAI47_02415: IAI47_02415 - type II 3-dehydroquinate dehydratase, at 496,981 to 497,433
_02415
Position (kb) 495
496
497 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 494.315 kb on + strand, within IAI47_02395 at 494.315 kb on + strand, within IAI47_02395 at 494.316 kb on - strand, within IAI47_02395 at 494.316 kb on - strand, within IAI47_02395 at 494.326 kb on - strand, within IAI47_02395 at 494.357 kb on + strand, within IAI47_02395 at 494.357 kb on + strand, within IAI47_02395 at 494.358 kb on - strand, within IAI47_02395 at 494.358 kb on - strand, within IAI47_02395 at 494.358 kb on - strand, within IAI47_02395 at 494.358 kb on - strand, within IAI47_02395 at 494.364 kb on + strand, within IAI47_02395 at 494.401 kb on - strand, within IAI47_02395 at 494.477 kb on + strand, within IAI47_02395 at 494.486 kb on + strand, within IAI47_02395 at 494.487 kb on - strand, within IAI47_02395 at 494.514 kb on + strand, within IAI47_02395 at 494.514 kb on + strand, within IAI47_02395 at 494.514 kb on + strand, within IAI47_02395 at 494.514 kb on + strand, within IAI47_02395 at 494.514 kb on + strand, within IAI47_02395 at 494.515 kb on - strand, within IAI47_02395 at 494.515 kb on - strand, within IAI47_02395 at 494.515 kb on - strand, within IAI47_02395 at 494.515 kb on - strand, within IAI47_02395 at 494.515 kb on - strand, within IAI47_02395 at 494.520 kb on + strand, within IAI47_02395 at 494.520 kb on + strand, within IAI47_02395 at 494.520 kb on + strand, within IAI47_02395 at 494.521 kb on - strand, within IAI47_02395 at 494.521 kb on - strand, within IAI47_02395 at 494.521 kb on - strand, within IAI47_02395 at 494.521 kb on - strand, within IAI47_02395 at 494.558 kb on - strand, within IAI47_02395 at 494.558 kb on - strand, within IAI47_02395 at 494.558 kb on - strand, within IAI47_02395 at 494.584 kb on + strand, within IAI47_02395 at 494.584 kb on + strand, within IAI47_02395 at 494.584 kb on + strand, within IAI47_02395 at 494.584 kb on + strand, within IAI47_02395 at 494.584 kb on + strand, within IAI47_02395 at 494.585 kb on - strand, within IAI47_02395 at 494.585 kb on - strand, within IAI47_02395 at 494.585 kb on - strand, within IAI47_02395 at 494.599 kb on + strand, within IAI47_02395 at 494.599 kb on + strand, within IAI47_02395 at 494.599 kb on + strand, within IAI47_02395 at 494.599 kb on + strand, within IAI47_02395 at 494.599 kb on + strand, within IAI47_02395 at 494.599 kb on + strand, within IAI47_02395 at 494.599 kb on + strand, within IAI47_02395 at 494.615 kb on + strand, within IAI47_02395 at 494.615 kb on + strand, within IAI47_02395 at 494.615 kb on + strand, within IAI47_02395 at 494.615 kb on + strand, within IAI47_02395 at 494.615 kb on + strand, within IAI47_02395 at 494.616 kb on - strand, within IAI47_02395 at 494.616 kb on - strand, within IAI47_02395 at 494.616 kb on - strand, within IAI47_02395 at 494.616 kb on - strand, within IAI47_02395 at 494.616 kb on - strand, within IAI47_02395 at 494.619 kb on + strand, within IAI47_02395 at 494.619 kb on + strand, within IAI47_02395 at 494.619 kb on + strand, within IAI47_02395 at 494.620 kb on - strand, within IAI47_02395 at 494.620 kb on - strand, within IAI47_02395 at 494.620 kb on - strand, within IAI47_02395 at 494.620 kb on - strand, within IAI47_02395 at 494.620 kb on - strand, within IAI47_02395 at 494.620 kb on - strand, within IAI47_02395 at 494.620 kb on - strand, within IAI47_02395 at 494.622 kb on - strand, within IAI47_02395 at 494.622 kb on - strand, within IAI47_02395 at 494.661 kb on + strand, within IAI47_02395 at 494.661 kb on + strand, within IAI47_02395 at 494.662 kb on - strand, within IAI47_02395 at 494.662 kb on - strand, within IAI47_02395 at 494.663 kb on + strand, within IAI47_02395 at 494.663 kb on + strand, within IAI47_02395 at 494.663 kb on + strand, within IAI47_02395 at 494.663 kb on + strand, within IAI47_02395 at 494.663 kb on + strand, within IAI47_02395 at 494.663 kb on + strand, within IAI47_02395 at 494.663 kb on + strand, within IAI47_02395 at 494.663 kb on + strand, within IAI47_02395 at 494.663 kb on + strand, within IAI47_02395 at 494.663 kb on + strand, within IAI47_02395 at 494.663 kb on + strand, within IAI47_02395 at 494.663 kb on + strand, within IAI47_02395 at 494.663 kb on + strand, within IAI47_02395 at 494.663 kb on + strand, within IAI47_02395 at 494.663 kb on + strand, within IAI47_02395 at 494.663 kb on + strand, within IAI47_02395 at 494.663 kb on + strand, within IAI47_02395 at 494.663 kb on + strand, within IAI47_02395 at 494.664 kb on - strand, within IAI47_02395 at 494.664 kb on - strand, within IAI47_02395 at 494.664 kb on - strand, within IAI47_02395 at 494.664 kb on - strand, within IAI47_02395 at 494.664 kb on - strand, within IAI47_02395 at 494.664 kb on - strand, within IAI47_02395 at 494.664 kb on - strand, within IAI47_02395 at 494.670 kb on + strand, within IAI47_02395 at 494.670 kb on + strand, within IAI47_02395 at 494.670 kb on + strand, within IAI47_02395 at 494.670 kb on + strand, within IAI47_02395 at 494.670 kb on + strand, within IAI47_02395 at 494.670 kb on + strand, within IAI47_02395 at 494.670 kb on + strand, within IAI47_02395 at 494.671 kb on - strand, within IAI47_02395 at 494.671 kb on - strand, within IAI47_02395 at 494.671 kb on - strand, within IAI47_02395 at 494.671 kb on - strand, within IAI47_02395 at 494.671 kb on - strand, within IAI47_02395 at 494.671 kb on - strand, within IAI47_02395 at 494.673 kb on + strand, within IAI47_02395 at 494.673 kb on + strand, within IAI47_02395 at 494.673 kb on + strand, within IAI47_02395 at 494.673 kb on + strand, within IAI47_02395 at 494.674 kb on - strand, within IAI47_02395 at 494.674 kb on - strand, within IAI47_02395 at 494.674 kb on - strand, within IAI47_02395 at 494.674 kb on - strand, within IAI47_02395 at 494.723 kb on + strand at 494.723 kb on + strand at 494.723 kb on + strand at 494.723 kb on + strand at 494.724 kb on - strand at 494.724 kb on - strand at 494.724 kb on - strand at 494.724 kb on - strand at 494.754 kb on + strand at 494.754 kb on + strand at 494.755 kb on - strand at 494.767 kb on + strand at 494.768 kb on - strand at 494.795 kb on + strand at 494.795 kb on + strand at 494.795 kb on + strand at 494.795 kb on + strand at 494.795 kb on + strand at 494.796 kb on - strand at 494.796 kb on - strand at 494.796 kb on - strand at 494.796 kb on - strand at 494.814 kb on + strand at 494.833 kb on + strand at 494.834 kb on - strand at 495.034 kb on + strand, within IAI47_02400 at 495.035 kb on - strand, within IAI47_02400 at 495.035 kb on - strand, within IAI47_02400 at 495.044 kb on + strand at 495.044 kb on + strand at 495.045 kb on - strand at 495.045 kb on - strand at 495.045 kb on - strand at 495.045 kb on - strand at 495.046 kb on + strand at 495.046 kb on + strand at 495.047 kb on - strand at 495.047 kb on - strand at 495.047 kb on - strand at 495.072 kb on + strand at 495.073 kb on - strand at 495.103 kb on + strand at 495.118 kb on + strand at 495.134 kb on + strand at 495.135 kb on - strand at 497.476 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 494,315 + IAI47_02395 0.64 -0.3 494,315 + IAI47_02395 0.64 -0.7 494,316 - IAI47_02395 0.64 -0.0 494,316 - IAI47_02395 0.64 -0.1 494,326 - IAI47_02395 0.65 +1.3 494,357 + IAI47_02395 0.67 +1.3 494,357 + IAI47_02395 0.67 -0.7 494,358 - IAI47_02395 0.67 +1.0 494,358 - IAI47_02395 0.67 -1.7 494,358 - IAI47_02395 0.67 -0.7 494,358 - IAI47_02395 0.67 -0.2 494,364 + IAI47_02395 0.68 -1.7 494,401 - IAI47_02395 0.70 +0.3 494,477 + IAI47_02395 0.76 +0.7 494,486 + IAI47_02395 0.76 +0.8 494,487 - IAI47_02395 0.76 +0.3 494,514 + IAI47_02395 0.78 -0.7 494,514 + IAI47_02395 0.78 -1.9 494,514 + IAI47_02395 0.78 +2.9 494,514 + IAI47_02395 0.78 -0.2 494,514 + IAI47_02395 0.78 +0.9 494,515 - IAI47_02395 0.78 -0.8 494,515 - IAI47_02395 0.78 -0.1 494,515 - IAI47_02395 0.78 -0.5 494,515 - IAI47_02395 0.78 -0.5 494,515 - IAI47_02395 0.78 +1.2 494,520 + IAI47_02395 0.79 -3.1 494,520 + IAI47_02395 0.79 -1.5 494,520 + IAI47_02395 0.79 -1.2 494,521 - IAI47_02395 0.79 -1.0 494,521 - IAI47_02395 0.79 -2.5 494,521 - IAI47_02395 0.79 -2.5 494,521 - IAI47_02395 0.79 +1.3 494,558 - IAI47_02395 0.81 -2.0 494,558 - IAI47_02395 0.81 +0.3 494,558 - IAI47_02395 0.81 -1.7 494,584 + IAI47_02395 0.83 -0.1 494,584 + IAI47_02395 0.83 +0.2 494,584 + IAI47_02395 0.83 -1.2 494,584 + IAI47_02395 0.83 -2.2 494,584 + IAI47_02395 0.83 +0.2 494,585 - IAI47_02395 0.83 +3.2 494,585 - IAI47_02395 0.83 -1.0 494,585 - IAI47_02395 0.83 +0.5 494,599 + IAI47_02395 0.84 +1.3 494,599 + IAI47_02395 0.84 -0.5 494,599 + IAI47_02395 0.84 +0.6 494,599 + IAI47_02395 0.84 +0.9 494,599 + IAI47_02395 0.84 -0.7 494,599 + IAI47_02395 0.84 +0.3 494,599 + IAI47_02395 0.84 -0.7 494,615 + IAI47_02395 0.85 -1.4 494,615 + IAI47_02395 0.85 +0.8 494,615 + IAI47_02395 0.85 +0.1 494,615 + IAI47_02395 0.85 -0.2 494,615 + IAI47_02395 0.85 +0.2 494,616 - IAI47_02395 0.85 +0.1 494,616 - IAI47_02395 0.85 +0.9 494,616 - IAI47_02395 0.85 -0.7 494,616 - IAI47_02395 0.85 -0.1 494,616 - IAI47_02395 0.85 +0.5 494,619 + IAI47_02395 0.85 -2.0 494,619 + IAI47_02395 0.85 +0.2 494,619 + IAI47_02395 0.85 -0.7 494,620 - IAI47_02395 0.85 -0.2 494,620 - IAI47_02395 0.85 +2.2 494,620 - IAI47_02395 0.85 +2.0 494,620 - IAI47_02395 0.85 +1.5 494,620 - IAI47_02395 0.85 +1.2 494,620 - IAI47_02395 0.85 +0.3 494,620 - IAI47_02395 0.85 -0.1 494,622 - IAI47_02395 0.86 -1.5 494,622 - IAI47_02395 0.86 +0.4 494,661 + IAI47_02395 0.88 +1.9 494,661 + IAI47_02395 0.88 -0.7 494,662 - IAI47_02395 0.88 -0.1 494,662 - IAI47_02395 0.88 +1.6 494,663 + IAI47_02395 0.88 +0.3 494,663 + IAI47_02395 0.88 -0.1 494,663 + IAI47_02395 0.88 -1.0 494,663 + IAI47_02395 0.88 -0.0 494,663 + IAI47_02395 0.88 +1.9 494,663 + IAI47_02395 0.88 -2.7 494,663 + IAI47_02395 0.88 -0.8 494,663 + IAI47_02395 0.88 -0.1 494,663 + IAI47_02395 0.88 +0.8 494,663 + IAI47_02395 0.88 -0.7 494,663 + IAI47_02395 0.88 -0.2 494,663 + IAI47_02395 0.88 -0.7 494,663 + IAI47_02395 0.88 -2.1 494,663 + IAI47_02395 0.88 +1.9 494,663 + IAI47_02395 0.88 +0.3 494,663 + IAI47_02395 0.88 +0.9 494,663 + IAI47_02395 0.88 -2.2 494,663 + IAI47_02395 0.88 -0.7 494,664 - IAI47_02395 0.89 +1.9 494,664 - IAI47_02395 0.89 -1.1 494,664 - IAI47_02395 0.89 +1.3 494,664 - IAI47_02395 0.89 -0.7 494,664 - IAI47_02395 0.89 +0.9 494,664 - IAI47_02395 0.89 +0.3 494,664 - IAI47_02395 0.89 +1.3 494,670 + IAI47_02395 0.89 +0.3 494,670 + IAI47_02395 0.89 -0.4 494,670 + IAI47_02395 0.89 -0.7 494,670 + IAI47_02395 0.89 -1.0 494,670 + IAI47_02395 0.89 +0.0 494,670 + IAI47_02395 0.89 -0.9 494,670 + IAI47_02395 0.89 -1.2 494,671 - IAI47_02395 0.89 -1.7 494,671 - IAI47_02395 0.89 +0.5 494,671 - IAI47_02395 0.89 -0.0 494,671 - IAI47_02395 0.89 -0.7 494,671 - IAI47_02395 0.89 -2.4 494,671 - IAI47_02395 0.89 -1.7 494,673 + IAI47_02395 0.89 +0.3 494,673 + IAI47_02395 0.89 +2.7 494,673 + IAI47_02395 0.89 -1.0 494,673 + IAI47_02395 0.89 -1.0 494,674 - IAI47_02395 0.89 +1.5 494,674 - IAI47_02395 0.89 -0.7 494,674 - IAI47_02395 0.89 +0.3 494,674 - IAI47_02395 0.89 -0.2 494,723 + -1.2 494,723 + -0.9 494,723 + -1.0 494,723 + -0.5 494,724 - -0.4 494,724 - +0.2 494,724 - +0.2 494,724 - -0.7 494,754 + +1.2 494,754 + +1.9 494,755 - +0.1 494,767 + -0.2 494,768 - +0.2 494,795 + +2.3 494,795 + +1.5 494,795 + +0.3 494,795 + +0.3 494,795 + -1.9 494,796 - +1.6 494,796 - -2.8 494,796 - +0.6 494,796 - +0.3 494,814 + +0.8 494,833 + -1.2 494,834 - -1.8 495,034 + IAI47_02400 0.88 -1.0 495,035 - IAI47_02400 0.89 +1.0 495,035 - IAI47_02400 0.89 +1.5 495,044 + -1.2 495,044 + +1.0 495,045 - +0.3 495,045 - -0.7 495,045 - +0.9 495,045 - -1.1 495,046 + +1.4 495,046 + -1.0 495,047 - +1.2 495,047 - +1.9 495,047 - +0.0 495,072 + -0.7 495,073 - -1.8 495,103 + -0.1 495,118 + -1.7 495,134 + +0.3 495,135 - +0.1 497,476 - +0.3
Or see this region's nucleotide sequence