Strain Fitness in Pantoea sp. MT58 around IAI47_00455

Experiment: Ying_sugar7 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_00450 and IAI47_00455 are separated by 7 nucleotidesIAI47_00455 and IAI47_00460 are separated by 138 nucleotides IAI47_00450: IAI47_00450 - nitrogen regulation protein NR(I), at 100,498 to 101,907 _00450 IAI47_00455: IAI47_00455 - nitrogen regulation protein NR(II), at 101,915 to 102,964 _00455 IAI47_00460: IAI47_00460 - glutamate--ammonia ligase, at 103,103 to 104,512 _00460 Position (kb) 101 102 103Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 100.937 kb on + strand, within IAI47_00450at 100.938 kb on - strand, within IAI47_00450at 100.957 kb on - strand, within IAI47_00450at 101.079 kb on + strandat 101.079 kb on + strand, within IAI47_00450at 101.080 kb on - strand, within IAI47_00450at 101.080 kb on - strand, within IAI47_00450at 101.080 kb on - strand, within IAI47_00450at 101.080 kb on - strand, within IAI47_00450at 101.082 kb on + strand, within IAI47_00450at 101.082 kb on + strand, within IAI47_00450at 101.082 kb on + strand, within IAI47_00450at 101.082 kb on + strand, within IAI47_00450at 101.082 kb on + strand, within IAI47_00450at 101.082 kb on + strand, within IAI47_00450at 101.082 kb on + strand, within IAI47_00450at 101.082 kb on + strand, within IAI47_00450at 101.083 kb on - strand, within IAI47_00450at 101.083 kb on - strand, within IAI47_00450at 101.083 kb on - strand, within IAI47_00450at 101.108 kb on + strand, within IAI47_00450at 101.109 kb on - strand, within IAI47_00450at 101.109 kb on - strand, within IAI47_00450at 101.123 kb on + strand, within IAI47_00450at 101.178 kb on + strand, within IAI47_00450at 101.178 kb on + strand, within IAI47_00450at 101.179 kb on - strand, within IAI47_00450at 101.179 kb on - strand, within IAI47_00450at 101.179 kb on - strand, within IAI47_00450at 101.179 kb on - strand, within IAI47_00450at 101.179 kb on - strand, within IAI47_00450at 101.179 kb on - strand, within IAI47_00450at 101.179 kb on - strand, within IAI47_00450at 101.308 kb on + strand, within IAI47_00450at 101.309 kb on - strand, within IAI47_00450at 101.309 kb on - strand, within IAI47_00450at 101.365 kb on + strand, within IAI47_00450at 101.365 kb on + strand, within IAI47_00450at 101.365 kb on + strand, within IAI47_00450at 101.365 kb on + strand, within IAI47_00450at 101.366 kb on - strand, within IAI47_00450at 101.366 kb on - strand, within IAI47_00450at 101.366 kb on - strand, within IAI47_00450at 101.366 kb on - strand, within IAI47_00450at 101.408 kb on + strand, within IAI47_00450at 101.409 kb on + strand, within IAI47_00450at 101.422 kb on + strand, within IAI47_00450at 101.451 kb on + strand, within IAI47_00450at 101.451 kb on + strand, within IAI47_00450at 101.451 kb on + strand, within IAI47_00450at 101.452 kb on - strand, within IAI47_00450at 101.452 kb on - strand, within IAI47_00450at 101.452 kb on - strand, within IAI47_00450at 101.487 kb on + strand, within IAI47_00450at 101.487 kb on + strand, within IAI47_00450at 101.487 kb on + strand, within IAI47_00450at 101.487 kb on + strand, within IAI47_00450at 101.488 kb on - strand, within IAI47_00450at 101.488 kb on - strand, within IAI47_00450at 101.488 kb on - strand, within IAI47_00450at 101.491 kb on - strand, within IAI47_00450at 101.491 kb on - strand, within IAI47_00450at 101.496 kb on + strand, within IAI47_00450at 101.496 kb on + strand, within IAI47_00450at 101.497 kb on - strand, within IAI47_00450at 101.497 kb on - strand, within IAI47_00450at 101.497 kb on - strand, within IAI47_00450at 101.520 kb on + strand, within IAI47_00450at 101.520 kb on + strand, within IAI47_00450at 101.521 kb on - strand, within IAI47_00450at 101.564 kb on - strand, within IAI47_00450at 101.606 kb on + strand, within IAI47_00450at 101.606 kb on + strand, within IAI47_00450at 101.607 kb on - strand, within IAI47_00450at 101.627 kb on + strand, within IAI47_00450at 101.668 kb on + strand, within IAI47_00450at 101.668 kb on + strand, within IAI47_00450at 101.669 kb on - strand, within IAI47_00450at 101.669 kb on - strand, within IAI47_00450at 101.669 kb on - strand, within IAI47_00450at 101.700 kb on + strand, within IAI47_00450at 101.701 kb on - strand, within IAI47_00450at 101.714 kb on - strand, within IAI47_00450at 101.755 kb on + strand, within IAI47_00450at 101.755 kb on + strand, within IAI47_00450at 101.756 kb on - strand, within IAI47_00450at 101.871 kb on + strandat 101.871 kb on + strandat 101.872 kb on - strandat 101.872 kb on - strandat 101.872 kb on - strandat 101.894 kb on - strandat 101.907 kb on + strandat 101.907 kb on + strandat 101.908 kb on - strandat 101.908 kb on - strandat 101.908 kb on - strandat 101.908 kb on - strandat 101.908 kb on - strandat 101.908 kb on - strandat 101.926 kb on + strandat 101.927 kb on - strandat 101.927 kb on - strandat 101.935 kb on - strandat 101.935 kb on - strandat 101.968 kb on + strandat 101.968 kb on + strandat 101.969 kb on - strandat 101.969 kb on - strandat 102.023 kb on + strand, within IAI47_00455at 102.024 kb on - strand, within IAI47_00455at 102.070 kb on + strand, within IAI47_00455at 102.071 kb on - strand, within IAI47_00455at 102.071 kb on - strand, within IAI47_00455at 102.118 kb on + strand, within IAI47_00455at 102.118 kb on + strand, within IAI47_00455at 102.119 kb on - strand, within IAI47_00455at 102.119 kb on - strand, within IAI47_00455at 102.119 kb on - strand, within IAI47_00455at 102.119 kb on - strand, within IAI47_00455at 102.119 kb on - strand, within IAI47_00455at 102.125 kb on + strand, within IAI47_00455at 102.125 kb on + strand, within IAI47_00455at 102.235 kb on + strand, within IAI47_00455at 102.242 kb on + strand, within IAI47_00455at 102.242 kb on + strand, within IAI47_00455at 102.242 kb on + strand, within IAI47_00455at 102.294 kb on + strand, within IAI47_00455at 102.343 kb on + strand, within IAI47_00455at 102.343 kb on + strand, within IAI47_00455at 102.343 kb on + strand, within IAI47_00455at 102.343 kb on + strand, within IAI47_00455at 102.343 kb on + strand, within IAI47_00455at 102.347 kb on + strand, within IAI47_00455at 102.347 kb on + strand, within IAI47_00455at 102.347 kb on + strand, within IAI47_00455at 102.407 kb on + strand, within IAI47_00455at 102.451 kb on + strand, within IAI47_00455at 102.451 kb on + strand, within IAI47_00455at 102.465 kb on + strand, within IAI47_00455at 102.466 kb on - strand, within IAI47_00455at 102.466 kb on - strand, within IAI47_00455at 102.466 kb on - strand, within IAI47_00455at 102.501 kb on - strand, within IAI47_00455at 102.541 kb on + strand, within IAI47_00455at 102.541 kb on + strand, within IAI47_00455at 102.541 kb on + strand, within IAI47_00455at 102.599 kb on + strand, within IAI47_00455at 102.599 kb on + strand, within IAI47_00455at 102.599 kb on + strand, within IAI47_00455at 102.628 kb on + strand, within IAI47_00455at 102.629 kb on - strand, within IAI47_00455at 102.656 kb on + strand, within IAI47_00455at 102.656 kb on + strand, within IAI47_00455at 102.657 kb on - strand, within IAI47_00455at 102.657 kb on - strand, within IAI47_00455at 102.691 kb on + strand, within IAI47_00455at 102.691 kb on + strand, within IAI47_00455at 102.691 kb on + strand, within IAI47_00455at 102.691 kb on + strand, within IAI47_00455at 102.691 kb on + strand, within IAI47_00455at 102.691 kb on + strand, within IAI47_00455at 102.691 kb on + strand, within IAI47_00455at 102.691 kb on + strand, within IAI47_00455at 102.691 kb on + strand, within IAI47_00455at 102.692 kb on - strand, within IAI47_00455at 102.692 kb on - strand, within IAI47_00455at 102.692 kb on - strand, within IAI47_00455at 102.692 kb on - strand, within IAI47_00455at 102.692 kb on - strand, within IAI47_00455at 102.692 kb on - strand, within IAI47_00455at 102.721 kb on + strand, within IAI47_00455at 102.721 kb on + strand, within IAI47_00455at 102.722 kb on - strand, within IAI47_00455at 102.778 kb on + strand, within IAI47_00455at 102.778 kb on + strand, within IAI47_00455at 102.779 kb on - strand, within IAI47_00455at 102.779 kb on - strand, within IAI47_00455at 102.800 kb on + strand, within IAI47_00455at 102.801 kb on - strand, within IAI47_00455at 102.848 kb on + strand, within IAI47_00455at 102.874 kb on - strandat 102.907 kb on + strandat 102.907 kb on + strandat 102.907 kb on + strandat 102.907 kb on + strandat 102.907 kb on + strandat 102.908 kb on - strandat 102.908 kb on - strandat 102.917 kb on + strandat 102.917 kb on + strandat 102.917 kb on + strandat 102.918 kb on - strandat 102.964 kb on + strandat 102.964 kb on + strandat 102.965 kb on - strandat 102.971 kb on + strandat 102.971 kb on + strandat 102.972 kb on - strandat 102.997 kb on + strandat 103.003 kb on + strandat 103.003 kb on + strandat 103.003 kb on + strandat 103.003 kb on + strandat 103.003 kb on + strandat 103.003 kb on + strandat 103.003 kb on + strandat 103.031 kb on + strandat 103.032 kb on - strandat 103.069 kb on - strandat 103.104 kb on + strandat 103.104 kb on + strandat 103.510 kb on - strand, within IAI47_00460at 103.651 kb on - strand, within IAI47_00460at 103.697 kb on - strand, within IAI47_00460at 103.745 kb on - strand, within IAI47_00460at 103.798 kb on - strand, within IAI47_00460

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3
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100,937 + IAI47_00450 0.31 -3.8
100,938 - IAI47_00450 0.31 -3.1
100,957 - IAI47_00450 0.33 -0.6
101,079 + -2.2
101,079 + IAI47_00450 0.41 -3.9
101,080 - IAI47_00450 0.41 -3.1
101,080 - IAI47_00450 0.41 -4.2
101,080 - IAI47_00450 0.41 -2.8
101,080 - IAI47_00450 0.41 -3.1
101,082 + IAI47_00450 0.41 -3.7
101,082 + IAI47_00450 0.41 -2.9
101,082 + IAI47_00450 0.41 -2.4
101,082 + IAI47_00450 0.41 -3.7
101,082 + IAI47_00450 0.41 -3.1
101,082 + IAI47_00450 0.41 -2.8
101,082 + IAI47_00450 0.41 -2.6
101,082 + IAI47_00450 0.41 -1.6
101,083 - IAI47_00450 0.41 -2.8
101,083 - IAI47_00450 0.41 -3.3
101,083 - IAI47_00450 0.41 -1.2
101,108 + IAI47_00450 0.43 -1.6
101,109 - IAI47_00450 0.43 -2.6
101,109 - IAI47_00450 0.43 -3.2
101,123 + IAI47_00450 0.44 -3.9
101,178 + IAI47_00450 0.48 -3.2
101,178 + IAI47_00450 0.48 -1.2
101,179 - IAI47_00450 0.48 -4.1
101,179 - IAI47_00450 0.48 -4.4
101,179 - IAI47_00450 0.48 -2.2
101,179 - IAI47_00450 0.48 -2.4
101,179 - IAI47_00450 0.48 -3.1
101,179 - IAI47_00450 0.48 -3.3
101,179 - IAI47_00450 0.48 -1.2
101,308 + IAI47_00450 0.57 -1.9
101,309 - IAI47_00450 0.58 -0.6
101,309 - IAI47_00450 0.58 -1.9
101,365 + IAI47_00450 0.61 -2.2
101,365 + IAI47_00450 0.61 +0.4
101,365 + IAI47_00450 0.61 -3.5
101,365 + IAI47_00450 0.61 -2.6
101,366 - IAI47_00450 0.62 -3.1
101,366 - IAI47_00450 0.62 -3.9
101,366 - IAI47_00450 0.62 +0.4
101,366 - IAI47_00450 0.62 -3.2
101,408 + IAI47_00450 0.65 -3.3
101,409 + IAI47_00450 0.65 -3.6
101,422 + IAI47_00450 0.66 -1.2
101,451 + IAI47_00450 0.68 -2.6
101,451 + IAI47_00450 0.68 -2.9
101,451 + IAI47_00450 0.68 -0.6
101,452 - IAI47_00450 0.68 -2.9
101,452 - IAI47_00450 0.68 -3.2
101,452 - IAI47_00450 0.68 -3.7
101,487 + IAI47_00450 0.70 -1.6
101,487 + IAI47_00450 0.70 -4.3
101,487 + IAI47_00450 0.70 -2.2
101,487 + IAI47_00450 0.70 +0.4
101,488 - IAI47_00450 0.70 -2.4
101,488 - IAI47_00450 0.70 -0.6
101,488 - IAI47_00450 0.70 -3.4
101,491 - IAI47_00450 0.70 -2.6
101,491 - IAI47_00450 0.70 -2.6
101,496 + IAI47_00450 0.71 -3.7
101,496 + IAI47_00450 0.71 -0.6
101,497 - IAI47_00450 0.71 -4.3
101,497 - IAI47_00450 0.71 -1.2
101,497 - IAI47_00450 0.71 -2.2
101,520 + IAI47_00450 0.72 -3.1
101,520 + IAI47_00450 0.72 -1.9
101,521 - IAI47_00450 0.73 -2.6
101,564 - IAI47_00450 0.76 -3.2
101,606 + IAI47_00450 0.79 -2.9
101,606 + IAI47_00450 0.79 -3.2
101,607 - IAI47_00450 0.79 -3.3
101,627 + IAI47_00450 0.80 -2.9
101,668 + IAI47_00450 0.83 -2.8
101,668 + IAI47_00450 0.83 -2.8
101,669 - IAI47_00450 0.83 -0.6
101,669 - IAI47_00450 0.83 -3.1
101,669 - IAI47_00450 0.83 -3.6
101,700 + IAI47_00450 0.85 -2.6
101,701 - IAI47_00450 0.85 -3.1
101,714 - IAI47_00450 0.86 +0.4
101,755 + IAI47_00450 0.89 -0.6
101,755 + IAI47_00450 0.89 -2.4
101,756 - IAI47_00450 0.89 -1.2
101,871 + -2.4
101,871 + -3.1
101,872 - -3.4
101,872 - -1.2
101,872 - -2.6
101,894 - -3.4
101,907 + -2.4
101,907 + -2.6
101,908 - -1.2
101,908 - -2.4
101,908 - +1.7
101,908 - -1.6
101,908 - +0.4
101,908 - -1.8
101,926 + +1.0
101,927 - +2.8
101,927 - -0.6
101,935 - -2.2
101,935 - -2.9
101,968 + -1.2
101,968 + -1.2
101,969 - -0.6
101,969 - -1.9
102,023 + IAI47_00455 0.10 -3.1
102,024 - IAI47_00455 0.10 -2.6
102,070 + IAI47_00455 0.15 -0.6
102,071 - IAI47_00455 0.15 -0.6
102,071 - IAI47_00455 0.15 -2.4
102,118 + IAI47_00455 0.19 -1.6
102,118 + IAI47_00455 0.19 -3.7
102,119 - IAI47_00455 0.19 -2.6
102,119 - IAI47_00455 0.19 -1.6
102,119 - IAI47_00455 0.19 -1.6
102,119 - IAI47_00455 0.19 -2.8
102,119 - IAI47_00455 0.19 -3.2
102,125 + IAI47_00455 0.20 -2.9
102,125 + IAI47_00455 0.20 -4.1
102,235 + IAI47_00455 0.30 -0.6
102,242 + IAI47_00455 0.31 -3.3
102,242 + IAI47_00455 0.31 -1.6
102,242 + IAI47_00455 0.31 -1.6
102,294 + IAI47_00455 0.36 +0.4
102,343 + IAI47_00455 0.41 -1.6
102,343 + IAI47_00455 0.41 -3.2
102,343 + IAI47_00455 0.41 -1.9
102,343 + IAI47_00455 0.41 -3.4
102,343 + IAI47_00455 0.41 -3.1
102,347 + IAI47_00455 0.41 -1.9
102,347 + IAI47_00455 0.41 -2.9
102,347 + IAI47_00455 0.41 -3.5
102,407 + IAI47_00455 0.47 -2.8
102,451 + IAI47_00455 0.51 -2.6
102,451 + IAI47_00455 0.51 -1.4
102,465 + IAI47_00455 0.52 -2.6
102,466 - IAI47_00455 0.52 -1.2
102,466 - IAI47_00455 0.52 -1.9
102,466 - IAI47_00455 0.52 -2.2
102,501 - IAI47_00455 0.56 -1.2
102,541 + IAI47_00455 0.60 -2.2
102,541 + IAI47_00455 0.60 -1.2
102,541 + IAI47_00455 0.60 -0.6
102,599 + IAI47_00455 0.65 -3.8
102,599 + IAI47_00455 0.65 +0.4
102,599 + IAI47_00455 0.65 -1.6
102,628 + IAI47_00455 0.68 -1.2
102,629 - IAI47_00455 0.68 -2.2
102,656 + IAI47_00455 0.71 -1.6
102,656 + IAI47_00455 0.71 -1.6
102,657 - IAI47_00455 0.71 -3.4
102,657 - IAI47_00455 0.71 -2.2
102,691 + IAI47_00455 0.74 -3.5
102,691 + IAI47_00455 0.74 -1.6
102,691 + IAI47_00455 0.74 -1.2
102,691 + IAI47_00455 0.74 -3.3
102,691 + IAI47_00455 0.74 -3.2
102,691 + IAI47_00455 0.74 +0.4
102,691 + IAI47_00455 0.74 -3.1
102,691 + IAI47_00455 0.74 -3.8
102,691 + IAI47_00455 0.74 -1.2
102,692 - IAI47_00455 0.74 -1.6
102,692 - IAI47_00455 0.74 -1.6
102,692 - IAI47_00455 0.74 -0.6
102,692 - IAI47_00455 0.74 -3.3
102,692 - IAI47_00455 0.74 -3.6
102,692 - IAI47_00455 0.74 -1.9
102,721 + IAI47_00455 0.77 -2.2
102,721 + IAI47_00455 0.77 -1.9
102,722 - IAI47_00455 0.77 -2.6
102,778 + IAI47_00455 0.82 -2.2
102,778 + IAI47_00455 0.82 -5.6
102,779 - IAI47_00455 0.82 -2.6
102,779 - IAI47_00455 0.82 -1.2
102,800 + IAI47_00455 0.84 -2.2
102,801 - IAI47_00455 0.84 -2.8
102,848 + IAI47_00455 0.89 -3.1
102,874 - -0.6
102,907 + -0.6
102,907 + -1.9
102,907 + -3.4
102,907 + -2.4
102,907 + -2.2
102,908 - -1.6
102,908 - -1.2
102,917 + +0.4
102,917 + -3.4
102,917 + -1.6
102,918 - -1.2
102,964 + -2.6
102,964 + -1.6
102,965 - -2.2
102,971 + -1.2
102,971 + +0.4
102,972 - -0.5
102,997 + +0.9
103,003 + +1.2
103,003 + +1.0
103,003 + -0.6
103,003 + -1.2
103,003 + +3.7
103,003 + -0.2
103,003 + -3.1
103,031 + +1.3
103,032 - +0.2
103,069 - +0.4
103,104 + -1.4
103,104 + -0.0
103,510 - IAI47_00460 0.29 +0.4
103,651 - IAI47_00460 0.39 -0.6
103,697 - IAI47_00460 0.42 -1.6
103,745 - IAI47_00460 0.46 -0.6
103,798 - IAI47_00460 0.49 -1.2

Or see this region's nucleotide sequence