Strain Fitness in Pantoea sp. MT58 around IAI47_21675

Experiment: Ying_sugar7 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_21665 and IAI47_21670 are separated by 239 nucleotidesIAI47_21670 and IAI47_21675 are separated by 32 nucleotidesIAI47_21675 and IAI47_21680 are separated by 713 nucleotides IAI47_21665: IAI47_21665 - DUF333 domain-containing protein, at 76,187 to 76,435 _21665 IAI47_21670: IAI47_21670 - LuxR family transcriptional regulator, at 76,675 to 77,310 _21670 IAI47_21675: IAI47_21675 - helix-turn-helix domain-containing protein, at 77,343 to 77,933 _21675 IAI47_21680: IAI47_21680 - hypothetical protein, at 78,647 to 79,138 _21680 Position (kb) 77 78Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 76.437 kb on + strandat 76.493 kb on + strandat 76.677 kb on - strandat 76.677 kb on - strandat 76.690 kb on - strandat 76.787 kb on + strand, within IAI47_21670at 76.788 kb on - strand, within IAI47_21670at 76.792 kb on - strand, within IAI47_21670at 76.800 kb on - strand, within IAI47_21670at 76.830 kb on + strand, within IAI47_21670at 76.830 kb on + strand, within IAI47_21670at 76.848 kb on + strand, within IAI47_21670at 76.849 kb on - strand, within IAI47_21670at 76.849 kb on - strand, within IAI47_21670at 76.922 kb on + strand, within IAI47_21670at 77.033 kb on + strand, within IAI47_21670at 77.033 kb on + strand, within IAI47_21670at 77.086 kb on + strand, within IAI47_21670at 77.089 kb on + strand, within IAI47_21670at 77.089 kb on + strand, within IAI47_21670at 77.090 kb on - strand, within IAI47_21670at 77.090 kb on - strand, within IAI47_21670at 77.090 kb on - strand, within IAI47_21670at 77.090 kb on - strand, within IAI47_21670at 77.091 kb on + strand, within IAI47_21670at 77.092 kb on - strand, within IAI47_21670at 77.092 kb on - strand, within IAI47_21670at 77.133 kb on + strand, within IAI47_21670at 77.134 kb on - strand, within IAI47_21670at 77.134 kb on - strand, within IAI47_21670at 77.134 kb on - strand, within IAI47_21670at 77.134 kb on - strand, within IAI47_21670at 77.135 kb on + strand, within IAI47_21670at 77.135 kb on + strand, within IAI47_21670at 77.136 kb on - strand, within IAI47_21670at 77.231 kb on - strand, within IAI47_21670at 77.231 kb on - strand, within IAI47_21670at 77.276 kb on + strandat 77.505 kb on + strand, within IAI47_21675at 77.532 kb on - strand, within IAI47_21675at 77.541 kb on + strand, within IAI47_21675at 77.547 kb on + strand, within IAI47_21675at 77.548 kb on - strand, within IAI47_21675at 77.548 kb on - strand, within IAI47_21675at 77.548 kb on - strand, within IAI47_21675at 77.549 kb on + strand, within IAI47_21675at 77.551 kb on + strand, within IAI47_21675at 77.585 kb on + strand, within IAI47_21675at 77.592 kb on - strand, within IAI47_21675at 77.753 kb on + strand, within IAI47_21675at 77.753 kb on + strand, within IAI47_21675at 77.754 kb on - strand, within IAI47_21675at 77.754 kb on - strand, within IAI47_21675at 77.802 kb on - strand, within IAI47_21675at 77.802 kb on - strand, within IAI47_21675at 77.812 kb on - strand, within IAI47_21675at 77.834 kb on - strand, within IAI47_21675at 77.880 kb on - strandat 77.991 kb on + strandat 78.058 kb on - strandat 78.106 kb on - strandat 78.134 kb on + strandat 78.211 kb on - strandat 78.243 kb on - strandat 78.247 kb on - strandat 78.329 kb on + strandat 78.369 kb on + strandat 78.369 kb on + strandat 78.370 kb on - strandat 78.370 kb on - strandat 78.387 kb on - strandat 78.387 kb on - strandat 78.387 kb on - strandat 78.390 kb on + strandat 78.390 kb on + strandat 78.390 kb on + strandat 78.390 kb on + strandat 78.390 kb on + strandat 78.391 kb on - strandat 78.391 kb on - strandat 78.391 kb on - strandat 78.391 kb on - strandat 78.391 kb on - strandat 78.391 kb on - strandat 78.395 kb on + strandat 78.396 kb on - strandat 78.396 kb on - strandat 78.466 kb on + strandat 78.475 kb on + strandat 78.476 kb on - strandat 78.609 kb on + strandat 78.620 kb on + strandat 78.633 kb on - strandat 78.651 kb on + strandat 78.696 kb on + strandat 78.835 kb on - strand, within IAI47_21680at 78.892 kb on + strand, within IAI47_21680at 78.898 kb on + strand, within IAI47_21680at 78.899 kb on - strand, within IAI47_21680at 78.899 kb on - strand, within IAI47_21680at 78.933 kb on + strand, within IAI47_21680at 78.933 kb on + strand, within IAI47_21680

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3
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76,437 + +0.5
76,493 + -0.5
76,677 - +0.4
76,677 - +1.2
76,690 - -0.1
76,787 + IAI47_21670 0.18 -0.3
76,788 - IAI47_21670 0.18 +0.3
76,792 - IAI47_21670 0.18 -0.4
76,800 - IAI47_21670 0.20 +0.2
76,830 + IAI47_21670 0.24 -0.0
76,830 + IAI47_21670 0.24 -0.5
76,848 + IAI47_21670 0.27 +0.9
76,849 - IAI47_21670 0.27 -0.7
76,849 - IAI47_21670 0.27 +0.5
76,922 + IAI47_21670 0.39 -0.3
77,033 + IAI47_21670 0.56 -0.0
77,033 + IAI47_21670 0.56 -0.8
77,086 + IAI47_21670 0.65 -1.4
77,089 + IAI47_21670 0.65 -1.0
77,089 + IAI47_21670 0.65 +1.2
77,090 - IAI47_21670 0.65 -0.0
77,090 - IAI47_21670 0.65 -1.3
77,090 - IAI47_21670 0.65 -0.3
77,090 - IAI47_21670 0.65 -0.8
77,091 + IAI47_21670 0.65 -1.1
77,092 - IAI47_21670 0.66 -1.1
77,092 - IAI47_21670 0.66 +0.3
77,133 + IAI47_21670 0.72 -2.7
77,134 - IAI47_21670 0.72 +0.7
77,134 - IAI47_21670 0.72 +0.6
77,134 - IAI47_21670 0.72 +1.0
77,134 - IAI47_21670 0.72 -2.8
77,135 + IAI47_21670 0.72 +0.5
77,135 + IAI47_21670 0.72 +3.5
77,136 - IAI47_21670 0.72 -0.6
77,231 - IAI47_21670 0.87 -0.2
77,231 - IAI47_21670 0.87 -0.0
77,276 + +1.8
77,505 + IAI47_21675 0.27 -1.0
77,532 - IAI47_21675 0.32 +1.3
77,541 + IAI47_21675 0.34 -1.0
77,547 + IAI47_21675 0.35 +2.6
77,548 - IAI47_21675 0.35 -1.9
77,548 - IAI47_21675 0.35 -0.7
77,548 - IAI47_21675 0.35 -0.2
77,549 + IAI47_21675 0.35 -2.8
77,551 + IAI47_21675 0.35 +1.0
77,585 + IAI47_21675 0.41 +0.1
77,592 - IAI47_21675 0.42 +3.5
77,753 + IAI47_21675 0.69 +3.0
77,753 + IAI47_21675 0.69 -0.0
77,754 - IAI47_21675 0.70 +0.3
77,754 - IAI47_21675 0.70 -0.6
77,802 - IAI47_21675 0.78 -0.0
77,802 - IAI47_21675 0.78 -1.3
77,812 - IAI47_21675 0.79 -1.4
77,834 - IAI47_21675 0.83 +0.3
77,880 - -1.4
77,991 + -0.0
78,058 - -0.4
78,106 - -1.8
78,134 + -2.2
78,211 - -1.0
78,243 - -0.6
78,247 - +0.3
78,329 + -0.4
78,369 + +0.9
78,369 + -0.0
78,370 - -1.7
78,370 - -0.4
78,387 - -1.2
78,387 - -0.3
78,387 - -1.4
78,390 + -0.3
78,390 + -0.3
78,390 + -0.0
78,390 + -0.0
78,390 + -0.4
78,391 - +0.6
78,391 - -0.4
78,391 - +0.9
78,391 - -1.0
78,391 - -3.5
78,391 - -0.6
78,395 + -0.4
78,396 - -0.7
78,396 - +0.2
78,466 + -0.0
78,475 + -0.7
78,476 - -0.7
78,609 + +0.2
78,620 + -0.8
78,633 - +0.4
78,651 + -0.5
78,696 + -2.8
78,835 - IAI47_21680 0.38 -3.0
78,892 + IAI47_21680 0.50 +0.7
78,898 + IAI47_21680 0.51 -1.3
78,899 - IAI47_21680 0.51 +0.1
78,899 - IAI47_21680 0.51 -1.0
78,933 + IAI47_21680 0.58 +3.2
78,933 + IAI47_21680 0.58 +0.6

Or see this region's nucleotide sequence