Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_20765 and IAI47_20770 are separated by 173 nucleotides IAI47_20770 and IAI47_20775 overlap by 1 nucleotides IAI47_20775 and IAI47_20780 are separated by 89 nucleotides IAI47_20780 and IAI47_20785 are separated by 60 nucleotides
IAI47_20765: IAI47_20765 - IclR family transcriptional regulator, at 398,613 to 399,323
_20765
IAI47_20770: IAI47_20770 - RraA family protein, at 399,497 to 400,189
_20770
IAI47_20775: IAI47_20775 - hydroxyacid dehydrogenase, at 400,189 to 401,139
_20775
IAI47_20780: IAI47_20780 - cupin domain-containing protein, at 401,229 to 401,576
_20780
IAI47_20785: IAI47_20785 - GNAT family N-acetyltransferase, at 401,637 to 402,125
_20785
Position (kb) 400
401
402 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 399.197 kb on - strand, within IAI47_20765 at 399.210 kb on - strand, within IAI47_20765 at 399.214 kb on + strand, within IAI47_20765 at 399.306 kb on + strand at 399.306 kb on + strand at 399.307 kb on - strand at 399.307 kb on - strand at 399.307 kb on - strand at 399.327 kb on + strand at 399.327 kb on + strand at 399.327 kb on + strand at 399.327 kb on + strand at 399.328 kb on - strand at 399.385 kb on - strand at 399.385 kb on - strand at 399.385 kb on - strand at 399.385 kb on - strand at 399.388 kb on + strand at 399.389 kb on - strand at 399.389 kb on - strand at 399.389 kb on - strand at 399.407 kb on + strand at 399.408 kb on - strand at 399.408 kb on - strand at 399.408 kb on - strand at 399.428 kb on + strand at 399.428 kb on + strand at 399.429 kb on - strand at 399.433 kb on + strand at 399.433 kb on + strand at 399.433 kb on + strand at 399.433 kb on + strand at 399.433 kb on + strand at 399.433 kb on + strand at 399.433 kb on + strand at 399.433 kb on + strand at 399.434 kb on - strand at 399.434 kb on - strand at 399.434 kb on - strand at 399.434 kb on - strand at 399.434 kb on - strand at 399.434 kb on - strand at 399.434 kb on - strand at 399.434 kb on - strand at 399.437 kb on + strand at 399.438 kb on - strand at 399.438 kb on - strand at 399.496 kb on + strand at 399.496 kb on + strand at 399.497 kb on - strand at 399.497 kb on - strand at 399.497 kb on - strand at 399.497 kb on - strand at 399.497 kb on - strand at 399.497 kb on - strand at 399.502 kb on + strand at 399.502 kb on + strand at 399.503 kb on - strand at 399.503 kb on - strand at 399.514 kb on + strand at 399.514 kb on + strand at 399.514 kb on + strand at 399.514 kb on + strand at 399.514 kb on + strand at 399.515 kb on - strand at 399.575 kb on + strand, within IAI47_20770 at 399.576 kb on - strand, within IAI47_20770 at 399.589 kb on - strand, within IAI47_20770 at 399.634 kb on + strand, within IAI47_20770 at 399.676 kb on + strand, within IAI47_20770 at 399.676 kb on + strand, within IAI47_20770 at 399.676 kb on + strand, within IAI47_20770 at 399.677 kb on - strand, within IAI47_20770 at 399.786 kb on + strand, within IAI47_20770 at 399.786 kb on + strand, within IAI47_20770 at 399.800 kb on - strand, within IAI47_20770 at 399.800 kb on - strand, within IAI47_20770 at 399.800 kb on - strand, within IAI47_20770 at 399.841 kb on + strand, within IAI47_20770 at 399.841 kb on + strand, within IAI47_20770 at 399.841 kb on + strand, within IAI47_20770 at 399.841 kb on + strand, within IAI47_20770 at 399.842 kb on - strand, within IAI47_20770 at 399.928 kb on + strand, within IAI47_20770 at 399.928 kb on + strand, within IAI47_20770 at 399.928 kb on + strand, within IAI47_20770 at 399.929 kb on - strand, within IAI47_20770 at 399.950 kb on - strand, within IAI47_20770 at 400.009 kb on + strand, within IAI47_20770 at 400.010 kb on - strand, within IAI47_20770 at 400.137 kb on + strand at 400.276 kb on + strand at 400.276 kb on + strand at 400.276 kb on + strand at 400.276 kb on + strand at 400.307 kb on + strand, within IAI47_20775 at 400.307 kb on + strand, within IAI47_20775 at 400.359 kb on + strand, within IAI47_20775 at 400.360 kb on - strand, within IAI47_20775 at 400.360 kb on - strand, within IAI47_20775 at 400.434 kb on + strand, within IAI47_20775 at 400.435 kb on - strand, within IAI47_20775 at 400.435 kb on - strand, within IAI47_20775 at 400.435 kb on - strand, within IAI47_20775 at 400.435 kb on - strand, within IAI47_20775 at 400.465 kb on - strand, within IAI47_20775 at 400.515 kb on + strand, within IAI47_20775 at 400.516 kb on - strand, within IAI47_20775 at 400.553 kb on + strand, within IAI47_20775 at 400.554 kb on - strand, within IAI47_20775 at 400.554 kb on - strand, within IAI47_20775 at 400.569 kb on + strand, within IAI47_20775 at 400.569 kb on + strand, within IAI47_20775 at 400.569 kb on + strand, within IAI47_20775 at 400.582 kb on + strand, within IAI47_20775 at 400.590 kb on + strand, within IAI47_20775 at 400.590 kb on + strand, within IAI47_20775 at 400.590 kb on + strand, within IAI47_20775 at 400.591 kb on - strand, within IAI47_20775 at 400.602 kb on + strand, within IAI47_20775 at 400.602 kb on + strand, within IAI47_20775 at 400.603 kb on - strand, within IAI47_20775 at 400.603 kb on - strand, within IAI47_20775 at 400.603 kb on - strand, within IAI47_20775 at 400.708 kb on + strand, within IAI47_20775 at 400.708 kb on + strand, within IAI47_20775 at 400.709 kb on - strand, within IAI47_20775 at 400.855 kb on - strand, within IAI47_20775 at 400.992 kb on + strand, within IAI47_20775 at 400.992 kb on + strand, within IAI47_20775 at 400.992 kb on + strand, within IAI47_20775 at 400.993 kb on - strand, within IAI47_20775 at 400.993 kb on - strand, within IAI47_20775 at 400.993 kb on - strand, within IAI47_20775 at 400.993 kb on - strand, within IAI47_20775 at 400.993 kb on - strand, within IAI47_20775 at 400.993 kb on - strand, within IAI47_20775 at 401.015 kb on + strand, within IAI47_20775 at 401.015 kb on + strand, within IAI47_20775 at 401.015 kb on + strand, within IAI47_20775 at 401.015 kb on + strand, within IAI47_20775 at 401.015 kb on + strand, within IAI47_20775 at 401.016 kb on - strand, within IAI47_20775 at 401.016 kb on - strand, within IAI47_20775 at 401.049 kb on + strand at 401.050 kb on - strand at 401.050 kb on - strand at 401.050 kb on - strand at 401.056 kb on + strand at 401.056 kb on + strand at 401.057 kb on - strand at 401.057 kb on - strand at 401.057 kb on - strand at 401.057 kb on - strand at 401.085 kb on + strand at 401.085 kb on + strand at 401.085 kb on + strand at 401.085 kb on + strand at 401.086 kb on - strand at 401.086 kb on - strand at 401.115 kb on + strand at 401.116 kb on - strand at 401.137 kb on + strand at 401.138 kb on - strand at 401.157 kb on + strand at 401.158 kb on - strand at 401.180 kb on + strand at 401.180 kb on + strand at 401.180 kb on + strand at 401.180 kb on + strand at 401.180 kb on + strand at 401.181 kb on - strand at 401.181 kb on - strand at 401.203 kb on + strand at 401.204 kb on - strand at 401.204 kb on - strand at 401.204 kb on - strand at 401.204 kb on - strand at 401.204 kb on - strand at 401.204 kb on - strand at 401.213 kb on + strand at 401.214 kb on - strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.257 kb on - strand at 401.257 kb on - strand at 401.257 kb on - strand at 401.257 kb on - strand at 401.257 kb on - strand at 401.257 kb on - strand at 401.257 kb on - strand at 401.257 kb on - strand at 401.257 kb on - strand at 401.260 kb on + strand at 401.260 kb on + strand at 401.260 kb on + strand at 401.260 kb on + strand at 401.260 kb on + strand at 401.260 kb on + strand at 401.260 kb on + strand at 401.260 kb on + strand at 401.260 kb on + strand at 401.260 kb on + strand at 401.260 kb on + strand at 401.260 kb on + strand at 401.260 kb on + strand at 401.261 kb on - strand at 401.261 kb on - strand at 401.261 kb on - strand at 401.261 kb on - strand at 401.261 kb on - strand at 401.261 kb on - strand at 401.261 kb on - strand at 401.286 kb on + strand, within IAI47_20780 at 401.389 kb on + strand, within IAI47_20780 at 401.389 kb on + strand, within IAI47_20780 at 401.389 kb on + strand, within IAI47_20780 at 401.389 kb on + strand, within IAI47_20780 at 401.390 kb on - strand, within IAI47_20780 at 401.390 kb on - strand, within IAI47_20780 at 401.390 kb on - strand, within IAI47_20780 at 401.405 kb on + strand, within IAI47_20780 at 401.405 kb on + strand, within IAI47_20780 at 401.405 kb on + strand, within IAI47_20780 at 401.405 kb on + strand, within IAI47_20780 at 401.406 kb on - strand, within IAI47_20780 at 401.406 kb on - strand, within IAI47_20780 at 401.406 kb on - strand, within IAI47_20780 at 401.406 kb on - strand, within IAI47_20780 at 401.602 kb on + strand at 401.602 kb on + strand at 401.602 kb on + strand at 401.603 kb on - strand at 401.648 kb on + strand at 401.683 kb on + strand at 401.683 kb on + strand at 401.683 kb on + strand at 401.684 kb on - strand at 401.684 kb on - strand at 401.684 kb on - strand at 401.789 kb on + strand, within IAI47_20785 at 401.790 kb on - strand, within IAI47_20785 at 401.790 kb on - strand, within IAI47_20785 at 401.807 kb on + strand, within IAI47_20785 at 401.808 kb on - strand, within IAI47_20785 at 401.808 kb on - strand, within IAI47_20785 at 401.825 kb on + strand, within IAI47_20785 at 401.826 kb on - strand, within IAI47_20785 at 401.826 kb on - strand, within IAI47_20785 at 401.826 kb on - strand, within IAI47_20785 at 401.888 kb on + strand, within IAI47_20785 at 401.888 kb on + strand, within IAI47_20785 at 401.889 kb on - strand, within IAI47_20785 at 401.890 kb on + strand, within IAI47_20785 at 401.906 kb on - strand, within IAI47_20785 at 401.913 kb on - strand, within IAI47_20785 at 401.913 kb on - strand, within IAI47_20785 at 401.997 kb on - strand, within IAI47_20785 at 401.997 kb on - strand, within IAI47_20785 at 402.004 kb on + strand, within IAI47_20785 at 402.005 kb on - strand, within IAI47_20785 at 402.029 kb on + strand, within IAI47_20785 at 402.030 kb on - strand, within IAI47_20785 at 402.039 kb on - strand, within IAI47_20785 at 402.043 kb on + strand, within IAI47_20785 at 402.046 kb on + strand, within IAI47_20785 at 402.046 kb on + strand, within IAI47_20785 at 402.046 kb on + strand, within IAI47_20785 at 402.046 kb on + strand, within IAI47_20785 at 402.046 kb on + strand, within IAI47_20785 at 402.047 kb on - strand, within IAI47_20785 at 402.047 kb on - strand, within IAI47_20785 at 402.049 kb on + strand, within IAI47_20785 at 402.049 kb on + strand, within IAI47_20785 at 402.050 kb on - strand, within IAI47_20785 at 402.050 kb on - strand, within IAI47_20785 at 402.050 kb on - strand, within IAI47_20785 at 402.050 kb on - strand, within IAI47_20785 at 402.050 kb on - strand, within IAI47_20785 at 402.050 kb on - strand, within IAI47_20785 at 402.117 kb on + strand at 402.117 kb on + strand at 402.118 kb on - strand at 402.129 kb on + strand at 402.129 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 399,197 - IAI47_20765 0.82 -0.4 399,210 - IAI47_20765 0.84 -2.2 399,214 + IAI47_20765 0.85 +0.3 399,306 + -1.6 399,306 + +0.5 399,307 - -0.6 399,307 - +0.3 399,307 - +0.1 399,327 + +2.0 399,327 + -0.2 399,327 + +0.1 399,327 + -0.1 399,328 - -2.1 399,385 - -0.5 399,385 - +1.2 399,385 - +1.3 399,385 - +0.7 399,388 + -1.5 399,389 - -1.3 399,389 - +0.5 399,389 - +0.1 399,407 + +0.2 399,408 - +1.9 399,408 - +0.3 399,408 - +0.4 399,428 + -2.2 399,428 + +0.6 399,429 - +0.5 399,433 + -0.3 399,433 + +0.4 399,433 + +0.7 399,433 + +1.4 399,433 + +0.9 399,433 + -1.3 399,433 + -0.2 399,433 + +0.7 399,434 - -1.7 399,434 - +0.6 399,434 - -0.1 399,434 - -1.0 399,434 - +0.7 399,434 - +0.5 399,434 - +1.9 399,434 - +0.1 399,437 + +0.1 399,438 - +1.1 399,438 - +0.8 399,496 + -0.6 399,496 + +1.7 399,497 - -1.3 399,497 - +1.0 399,497 - -0.4 399,497 - +1.7 399,497 - +0.4 399,497 - +1.3 399,502 + -1.2 399,502 + -2.5 399,503 - +1.9 399,503 - -1.7 399,514 + -2.5 399,514 + -0.9 399,514 + +1.1 399,514 + -0.0 399,514 + -0.9 399,515 - +1.2 399,575 + IAI47_20770 0.11 +0.6 399,576 - IAI47_20770 0.11 -0.2 399,589 - IAI47_20770 0.13 +0.4 399,634 + IAI47_20770 0.20 -0.2 399,676 + IAI47_20770 0.26 -0.7 399,676 + IAI47_20770 0.26 +2.4 399,676 + IAI47_20770 0.26 -1.5 399,677 - IAI47_20770 0.26 +0.1 399,786 + IAI47_20770 0.42 +0.5 399,786 + IAI47_20770 0.42 -1.5 399,800 - IAI47_20770 0.44 +0.5 399,800 - IAI47_20770 0.44 -2.2 399,800 - IAI47_20770 0.44 +0.1 399,841 + IAI47_20770 0.50 -0.2 399,841 + IAI47_20770 0.50 +0.3 399,841 + IAI47_20770 0.50 -0.9 399,841 + IAI47_20770 0.50 +1.6 399,842 - IAI47_20770 0.50 -1.1 399,928 + IAI47_20770 0.62 +1.0 399,928 + IAI47_20770 0.62 -1.3 399,928 + IAI47_20770 0.62 -0.3 399,929 - IAI47_20770 0.62 -0.3 399,950 - IAI47_20770 0.65 -0.2 400,009 + IAI47_20770 0.74 +1.8 400,010 - IAI47_20770 0.74 +0.3 400,137 + -1.5 400,276 + +0.3 400,276 + +0.3 400,276 + -0.1 400,276 + -0.7 400,307 + IAI47_20775 0.12 -0.5 400,307 + IAI47_20775 0.12 +0.1 400,359 + IAI47_20775 0.18 -0.9 400,360 - IAI47_20775 0.18 +0.4 400,360 - IAI47_20775 0.18 -1.1 400,434 + IAI47_20775 0.26 -1.5 400,435 - IAI47_20775 0.26 +0.1 400,435 - IAI47_20775 0.26 -2.0 400,435 - IAI47_20775 0.26 +0.5 400,435 - IAI47_20775 0.26 +0.1 400,465 - IAI47_20775 0.29 -0.4 400,515 + IAI47_20775 0.34 -1.2 400,516 - IAI47_20775 0.34 +0.5 400,553 + IAI47_20775 0.38 -2.0 400,554 - IAI47_20775 0.38 +0.1 400,554 - IAI47_20775 0.38 -1.5 400,569 + IAI47_20775 0.40 +0.1 400,569 + IAI47_20775 0.40 -1.5 400,569 + IAI47_20775 0.40 +1.1 400,582 + IAI47_20775 0.41 -0.5 400,590 + IAI47_20775 0.42 +0.1 400,590 + IAI47_20775 0.42 +1.1 400,590 + IAI47_20775 0.42 -0.5 400,591 - IAI47_20775 0.42 +0.1 400,602 + IAI47_20775 0.43 -1.3 400,602 + IAI47_20775 0.43 +1.5 400,603 - IAI47_20775 0.44 -2.8 400,603 - IAI47_20775 0.44 +0.8 400,603 - IAI47_20775 0.44 +0.3 400,708 + IAI47_20775 0.55 +0.0 400,708 + IAI47_20775 0.55 -0.5 400,709 - IAI47_20775 0.55 -1.7 400,855 - IAI47_20775 0.70 +0.4 400,992 + IAI47_20775 0.84 -0.8 400,992 + IAI47_20775 0.84 +1.0 400,992 + IAI47_20775 0.84 +0.1 400,993 - IAI47_20775 0.85 -0.8 400,993 - IAI47_20775 0.85 -0.9 400,993 - IAI47_20775 0.85 +0.3 400,993 - IAI47_20775 0.85 -0.3 400,993 - IAI47_20775 0.85 +0.4 400,993 - IAI47_20775 0.85 -0.7 401,015 + IAI47_20775 0.87 -0.7 401,015 + IAI47_20775 0.87 +0.6 401,015 + IAI47_20775 0.87 +0.3 401,015 + IAI47_20775 0.87 -1.0 401,015 + IAI47_20775 0.87 -0.2 401,016 - IAI47_20775 0.87 -0.9 401,016 - IAI47_20775 0.87 -3.3 401,049 + -2.2 401,050 - -3.3 401,050 - +0.5 401,050 - +1.9 401,056 + -0.6 401,056 + -0.3 401,057 - -0.1 401,057 - +1.5 401,057 - -0.5 401,057 - +0.1 401,085 + +1.9 401,085 + +0.7 401,085 + +0.9 401,085 + +1.0 401,086 - +0.4 401,086 - -0.3 401,115 + -0.4 401,116 - -0.4 401,137 + +1.0 401,138 - +1.7 401,157 + +0.7 401,158 - +1.1 401,180 + -0.2 401,180 + +0.4 401,180 + -0.6 401,180 + +2.1 401,180 + -1.5 401,181 - -0.9 401,181 - +0.8 401,203 + +0.4 401,204 - +1.1 401,204 - +0.1 401,204 - +0.3 401,204 - -0.5 401,204 - +1.7 401,204 - -1.7 401,213 + +0.7 401,214 - -0.4 401,256 + -0.2 401,256 + -0.9 401,256 + +1.0 401,256 + -0.5 401,256 + +0.8 401,256 + -0.7 401,256 + +0.4 401,256 + -1.3 401,256 + +0.7 401,256 + -2.2 401,256 + -0.5 401,256 + -0.1 401,256 + +0.1 401,256 + +0.3 401,256 + -0.7 401,256 + +0.7 401,256 + +1.1 401,257 - +1.2 401,257 - -1.7 401,257 - +1.2 401,257 - -1.2 401,257 - -0.2 401,257 - -1.4 401,257 - +1.7 401,257 - +0.1 401,257 - -0.3 401,260 + -0.4 401,260 + +0.6 401,260 + -0.4 401,260 + -0.5 401,260 + -1.6 401,260 + -1.3 401,260 + -2.5 401,260 + +0.8 401,260 + -0.9 401,260 + -1.0 401,260 + -1.3 401,260 + +1.7 401,260 + -2.5 401,261 - +1.7 401,261 - -0.2 401,261 - -1.5 401,261 - +0.3 401,261 - -0.3 401,261 - -0.2 401,261 - +0.9 401,286 + IAI47_20780 0.16 -0.2 401,389 + IAI47_20780 0.46 -0.3 401,389 + IAI47_20780 0.46 -0.9 401,389 + IAI47_20780 0.46 -0.5 401,389 + IAI47_20780 0.46 -1.1 401,390 - IAI47_20780 0.46 +0.6 401,390 - IAI47_20780 0.46 +1.1 401,390 - IAI47_20780 0.46 -0.3 401,405 + IAI47_20780 0.51 +1.5 401,405 + IAI47_20780 0.51 -0.5 401,405 + IAI47_20780 0.51 +0.1 401,405 + IAI47_20780 0.51 +0.8 401,406 - IAI47_20780 0.51 +1.4 401,406 - IAI47_20780 0.51 +1.5 401,406 - IAI47_20780 0.51 -1.3 401,406 - IAI47_20780 0.51 -0.5 401,602 + +0.1 401,602 + -1.9 401,602 + -1.8 401,603 - -0.0 401,648 + -1.9 401,683 + -1.3 401,683 + +1.3 401,683 + +1.7 401,684 - -1.3 401,684 - -1.2 401,684 - +0.9 401,789 + IAI47_20785 0.31 +1.0 401,790 - IAI47_20785 0.31 -0.5 401,790 - IAI47_20785 0.31 -1.2 401,807 + IAI47_20785 0.35 -1.2 401,808 - IAI47_20785 0.35 -0.4 401,808 - IAI47_20785 0.35 +0.5 401,825 + IAI47_20785 0.38 -0.5 401,826 - IAI47_20785 0.39 -0.7 401,826 - IAI47_20785 0.39 +1.3 401,826 - IAI47_20785 0.39 +0.7 401,888 + IAI47_20785 0.51 +0.5 401,888 + IAI47_20785 0.51 +0.8 401,889 - IAI47_20785 0.52 -0.0 401,890 + IAI47_20785 0.52 -1.0 401,906 - IAI47_20785 0.55 -2.2 401,913 - IAI47_20785 0.56 +1.1 401,913 - IAI47_20785 0.56 -0.9 401,997 - IAI47_20785 0.74 -0.4 401,997 - IAI47_20785 0.74 +0.2 402,004 + IAI47_20785 0.75 +1.4 402,005 - IAI47_20785 0.75 +0.1 402,029 + IAI47_20785 0.80 -0.7 402,030 - IAI47_20785 0.80 +1.0 402,039 - IAI47_20785 0.82 +0.6 402,043 + IAI47_20785 0.83 +1.5 402,046 + IAI47_20785 0.84 +0.7 402,046 + IAI47_20785 0.84 +0.8 402,046 + IAI47_20785 0.84 -0.2 402,046 + IAI47_20785 0.84 -3.5 402,046 + IAI47_20785 0.84 +0.8 402,047 - IAI47_20785 0.84 +0.1 402,047 - IAI47_20785 0.84 +1.1 402,049 + IAI47_20785 0.84 +0.3 402,049 + IAI47_20785 0.84 -0.5 402,050 - IAI47_20785 0.84 -1.5 402,050 - IAI47_20785 0.84 +0.9 402,050 - IAI47_20785 0.84 -0.9 402,050 - IAI47_20785 0.84 +0.5 402,050 - IAI47_20785 0.84 -0.2 402,050 - IAI47_20785 0.84 +0.3 402,117 + -0.5 402,117 + -2.9 402,118 - +0.9 402,129 + -1.2 402,129 + +2.1
Or see this region's nucleotide sequence