Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_19590 and IAI47_19595 are separated by 23 nucleotides IAI47_19595 and IAI47_19600 overlap by 4 nucleotides IAI47_19600 and IAI47_19605 overlap by 4 nucleotides IAI47_19605 and IAI47_19610 are separated by 276 nucleotides
IAI47_19590: IAI47_19590 - ABC transporter substrate-binding protein, at 147,927 to 148,862
_19590
IAI47_19595: IAI47_19595 - ABC transporter permease, at 148,886 to 149,641
_19595
IAI47_19600: IAI47_19600 - ABC transporter ATP-binding protein, at 149,638 to 150,378
_19600
IAI47_19605: IAI47_19605 - thiaminase II, at 150,375 to 151,076
_19605
IAI47_19610: IAI47_19610 - 6-phospho-beta-glucosidase, at 151,353 to 152,783
_19610
Position (kb) 149
150
151 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 148.691 kb on + strand, within IAI47_19590 at 148.691 kb on + strand, within IAI47_19590 at 148.692 kb on - strand, within IAI47_19590 at 148.692 kb on - strand, within IAI47_19590 at 148.692 kb on - strand, within IAI47_19590 at 148.692 kb on - strand, within IAI47_19590 at 148.695 kb on + strand, within IAI47_19590 at 148.695 kb on + strand, within IAI47_19590 at 148.695 kb on + strand, within IAI47_19590 at 148.695 kb on + strand, within IAI47_19590 at 148.696 kb on - strand, within IAI47_19590 at 148.696 kb on - strand, within IAI47_19590 at 148.742 kb on + strand, within IAI47_19590 at 148.742 kb on + strand, within IAI47_19590 at 148.743 kb on - strand, within IAI47_19590 at 148.743 kb on - strand, within IAI47_19590 at 148.743 kb on - strand, within IAI47_19590 at 148.743 kb on - strand, within IAI47_19590 at 148.766 kb on + strand, within IAI47_19590 at 148.766 kb on + strand, within IAI47_19590 at 148.767 kb on - strand, within IAI47_19590 at 148.767 kb on - strand, within IAI47_19590 at 148.767 kb on - strand, within IAI47_19590 at 148.767 kb on - strand, within IAI47_19590 at 148.768 kb on + strand, within IAI47_19590 at 148.768 kb on + strand, within IAI47_19590 at 148.768 kb on + strand, within IAI47_19590 at 148.769 kb on - strand at 148.842 kb on + strand at 148.842 kb on + strand at 148.856 kb on + strand at 148.857 kb on - strand at 148.857 kb on - strand at 148.857 kb on - strand at 148.878 kb on - strand at 148.909 kb on + strand at 148.909 kb on + strand at 148.909 kb on + strand at 148.909 kb on + strand at 148.909 kb on + strand at 148.910 kb on - strand at 148.910 kb on - strand at 148.910 kb on - strand at 148.910 kb on - strand at 149.069 kb on - strand, within IAI47_19595 at 149.179 kb on + strand, within IAI47_19595 at 149.180 kb on - strand, within IAI47_19595 at 149.333 kb on + strand, within IAI47_19595 at 149.381 kb on + strand, within IAI47_19595 at 149.382 kb on - strand, within IAI47_19595 at 149.394 kb on + strand, within IAI47_19595 at 149.394 kb on + strand, within IAI47_19595 at 149.394 kb on + strand, within IAI47_19595 at 149.394 kb on + strand, within IAI47_19595 at 149.394 kb on + strand, within IAI47_19595 at 149.394 kb on + strand, within IAI47_19595 at 149.394 kb on + strand, within IAI47_19595 at 149.394 kb on + strand, within IAI47_19595 at 149.395 kb on - strand, within IAI47_19595 at 149.395 kb on - strand, within IAI47_19595 at 149.481 kb on + strand, within IAI47_19595 at 149.481 kb on + strand, within IAI47_19595 at 149.481 kb on + strand, within IAI47_19595 at 149.481 kb on + strand, within IAI47_19595 at 149.482 kb on - strand, within IAI47_19595 at 149.482 kb on - strand, within IAI47_19595 at 149.490 kb on + strand, within IAI47_19595 at 149.490 kb on + strand, within IAI47_19595 at 149.490 kb on + strand, within IAI47_19595 at 149.491 kb on - strand, within IAI47_19595 at 149.491 kb on - strand, within IAI47_19595 at 149.515 kb on + strand, within IAI47_19595 at 149.515 kb on + strand, within IAI47_19595 at 149.516 kb on - strand, within IAI47_19595 at 149.516 kb on - strand, within IAI47_19595 at 149.554 kb on + strand, within IAI47_19595 at 149.554 kb on + strand, within IAI47_19595 at 149.554 kb on + strand, within IAI47_19595 at 149.555 kb on - strand, within IAI47_19595 at 149.605 kb on + strand at 149.605 kb on + strand at 149.605 kb on + strand at 149.606 kb on - strand at 149.606 kb on - strand at 149.606 kb on - strand at 149.656 kb on + strand at 149.656 kb on + strand at 149.656 kb on + strand at 149.657 kb on - strand at 149.657 kb on - strand at 149.686 kb on + strand at 149.686 kb on + strand at 149.686 kb on + strand at 149.686 kb on + strand at 149.687 kb on - strand at 149.687 kb on - strand at 149.689 kb on + strand at 149.728 kb on + strand, within IAI47_19600 at 149.728 kb on + strand, within IAI47_19600 at 149.930 kb on + strand, within IAI47_19600 at 149.930 kb on + strand, within IAI47_19600 at 149.930 kb on + strand, within IAI47_19600 at 149.930 kb on + strand, within IAI47_19600 at 149.931 kb on - strand, within IAI47_19600 at 150.029 kb on + strand, within IAI47_19600 at 150.174 kb on + strand, within IAI47_19600 at 150.198 kb on + strand, within IAI47_19600 at 150.199 kb on - strand, within IAI47_19600 at 150.199 kb on - strand, within IAI47_19600 at 150.321 kb on + strand at 150.321 kb on + strand at 150.321 kb on + strand at 150.322 kb on - strand at 150.345 kb on + strand at 150.346 kb on - strand at 150.408 kb on + strand at 150.520 kb on - strand, within IAI47_19605 at 150.534 kb on + strand, within IAI47_19605 at 150.547 kb on + strand, within IAI47_19605 at 150.548 kb on - strand, within IAI47_19605 at 150.548 kb on - strand, within IAI47_19605 at 150.584 kb on - strand, within IAI47_19605 at 150.584 kb on - strand, within IAI47_19605 at 150.672 kb on + strand, within IAI47_19605 at 150.673 kb on - strand, within IAI47_19605 at 150.716 kb on - strand, within IAI47_19605 at 150.716 kb on - strand, within IAI47_19605 at 150.716 kb on - strand, within IAI47_19605 at 150.716 kb on - strand, within IAI47_19605 at 150.724 kb on + strand, within IAI47_19605 at 150.725 kb on - strand, within IAI47_19605 at 150.831 kb on - strand, within IAI47_19605 at 150.831 kb on - strand, within IAI47_19605 at 150.852 kb on + strand, within IAI47_19605 at 150.853 kb on - strand, within IAI47_19605 at 150.922 kb on + strand, within IAI47_19605 at 150.922 kb on + strand, within IAI47_19605 at 150.922 kb on + strand, within IAI47_19605 at 150.922 kb on + strand, within IAI47_19605 at 150.922 kb on + strand, within IAI47_19605 at 150.922 kb on + strand, within IAI47_19605 at 150.922 kb on + strand, within IAI47_19605 at 150.922 kb on + strand, within IAI47_19605 at 150.922 kb on + strand, within IAI47_19605 at 150.922 kb on + strand, within IAI47_19605 at 150.922 kb on + strand, within IAI47_19605 at 150.922 kb on + strand, within IAI47_19605 at 150.923 kb on - strand, within IAI47_19605 at 150.923 kb on - strand, within IAI47_19605 at 150.923 kb on - strand, within IAI47_19605 at 150.923 kb on - strand, within IAI47_19605 at 150.923 kb on - strand, within IAI47_19605 at 150.937 kb on + strand, within IAI47_19605 at 150.937 kb on + strand, within IAI47_19605 at 150.938 kb on - strand, within IAI47_19605 at 150.965 kb on + strand, within IAI47_19605 at 150.965 kb on + strand, within IAI47_19605 at 150.999 kb on + strand, within IAI47_19605 at 150.999 kb on + strand, within IAI47_19605 at 150.999 kb on + strand, within IAI47_19605 at 150.999 kb on + strand, within IAI47_19605 at 150.999 kb on + strand, within IAI47_19605 at 150.999 kb on + strand, within IAI47_19605 at 150.999 kb on + strand, within IAI47_19605 at 151.000 kb on - strand, within IAI47_19605 at 151.000 kb on - strand, within IAI47_19605 at 151.000 kb on - strand, within IAI47_19605 at 151.000 kb on - strand, within IAI47_19605 at 151.003 kb on + strand, within IAI47_19605 at 151.003 kb on + strand, within IAI47_19605 at 151.004 kb on - strand, within IAI47_19605 at 151.004 kb on - strand, within IAI47_19605 at 151.004 kb on - strand, within IAI47_19605 at 151.004 kb on - strand, within IAI47_19605 at 151.004 kb on - strand, within IAI47_19605 at 151.004 kb on - strand, within IAI47_19605 at 151.045 kb on + strand at 151.045 kb on + strand at 151.045 kb on + strand at 151.045 kb on + strand at 151.046 kb on - strand at 151.046 kb on - strand at 151.088 kb on + strand at 151.088 kb on + strand at 151.108 kb on - strand at 151.108 kb on - strand at 151.108 kb on - strand at 151.108 kb on - strand at 151.108 kb on - strand at 151.108 kb on - strand at 151.126 kb on + strand at 151.126 kb on + strand at 151.127 kb on - strand at 151.252 kb on - strand at 151.252 kb on - strand at 151.253 kb on + strand at 151.253 kb on + strand at 151.253 kb on + strand at 151.258 kb on + strand at 151.258 kb on + strand at 151.258 kb on + strand at 151.258 kb on + strand at 151.258 kb on + strand at 151.258 kb on + strand at 151.259 kb on - strand at 151.259 kb on - strand at 151.259 kb on - strand at 151.259 kb on - strand at 151.262 kb on + strand at 151.263 kb on - strand at 151.293 kb on + strand at 151.293 kb on + strand at 151.294 kb on - strand at 151.294 kb on - strand at 151.313 kb on - strand at 151.373 kb on + strand at 151.373 kb on + strand at 151.373 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 148,691 + IAI47_19590 0.82 +1.3 148,691 + IAI47_19590 0.82 -1.2 148,692 - IAI47_19590 0.82 -1.0 148,692 - IAI47_19590 0.82 -0.7 148,692 - IAI47_19590 0.82 +0.8 148,692 - IAI47_19590 0.82 +0.7 148,695 + IAI47_19590 0.82 +0.5 148,695 + IAI47_19590 0.82 -1.2 148,695 + IAI47_19590 0.82 +0.1 148,695 + IAI47_19590 0.82 +0.5 148,696 - IAI47_19590 0.82 -0.9 148,696 - IAI47_19590 0.82 -0.2 148,742 + IAI47_19590 0.87 +1.2 148,742 + IAI47_19590 0.87 +0.1 148,743 - IAI47_19590 0.87 +0.9 148,743 - IAI47_19590 0.87 +0.5 148,743 - IAI47_19590 0.87 -0.6 148,743 - IAI47_19590 0.87 +0.1 148,766 + IAI47_19590 0.90 -0.4 148,766 + IAI47_19590 0.90 +0.0 148,767 - IAI47_19590 0.90 -0.2 148,767 - IAI47_19590 0.90 -1.9 148,767 - IAI47_19590 0.90 -0.4 148,767 - IAI47_19590 0.90 -0.3 148,768 + IAI47_19590 0.90 -0.7 148,768 + IAI47_19590 0.90 +0.5 148,768 + IAI47_19590 0.90 +1.0 148,769 - +0.7 148,842 + +0.5 148,842 + +1.0 148,856 + +1.5 148,857 - -0.1 148,857 - -1.5 148,857 - +1.9 148,878 - +1.0 148,909 + +0.1 148,909 + -0.4 148,909 + -1.2 148,909 + +0.1 148,909 + -0.1 148,910 - +0.1 148,910 - +0.7 148,910 - +2.1 148,910 - +0.3 149,069 - IAI47_19595 0.24 -1.9 149,179 + IAI47_19595 0.39 -1.0 149,180 - IAI47_19595 0.39 +0.5 149,333 + IAI47_19595 0.59 -0.5 149,381 + IAI47_19595 0.65 -2.7 149,382 - IAI47_19595 0.66 -1.2 149,394 + IAI47_19595 0.67 +0.7 149,394 + IAI47_19595 0.67 -0.4 149,394 + IAI47_19595 0.67 -2.5 149,394 + IAI47_19595 0.67 -0.3 149,394 + IAI47_19595 0.67 +0.5 149,394 + IAI47_19595 0.67 +0.1 149,394 + IAI47_19595 0.67 +1.0 149,394 + IAI47_19595 0.67 +0.7 149,395 - IAI47_19595 0.67 +0.7 149,395 - IAI47_19595 0.67 -0.2 149,481 + IAI47_19595 0.79 +0.9 149,481 + IAI47_19595 0.79 +1.9 149,481 + IAI47_19595 0.79 +0.5 149,481 + IAI47_19595 0.79 +0.1 149,482 - IAI47_19595 0.79 -1.9 149,482 - IAI47_19595 0.79 +0.1 149,490 + IAI47_19595 0.80 -1.9 149,490 + IAI47_19595 0.80 +0.1 149,490 + IAI47_19595 0.80 +0.7 149,491 - IAI47_19595 0.80 -0.9 149,491 - IAI47_19595 0.80 -0.3 149,515 + IAI47_19595 0.83 +1.7 149,515 + IAI47_19595 0.83 +0.1 149,516 - IAI47_19595 0.83 +1.1 149,516 - IAI47_19595 0.83 +0.4 149,554 + IAI47_19595 0.88 -0.1 149,554 + IAI47_19595 0.88 +0.1 149,554 + IAI47_19595 0.88 -0.9 149,555 - IAI47_19595 0.88 -0.5 149,605 + +0.1 149,605 + +0.5 149,605 + -0.6 149,606 - +1.1 149,606 - -1.0 149,606 - +1.1 149,656 + +1.3 149,656 + +1.9 149,656 + +0.1 149,657 - -0.5 149,657 - +0.8 149,686 + -2.0 149,686 + +0.5 149,686 + -0.6 149,686 + +0.1 149,687 - -1.8 149,687 - +0.1 149,689 + +2.3 149,728 + IAI47_19600 0.12 +0.1 149,728 + IAI47_19600 0.12 +0.6 149,930 + IAI47_19600 0.39 +0.1 149,930 + IAI47_19600 0.39 +0.3 149,930 + IAI47_19600 0.39 +2.4 149,930 + IAI47_19600 0.39 +2.7 149,931 - IAI47_19600 0.40 +0.7 150,029 + IAI47_19600 0.53 +2.9 150,174 + IAI47_19600 0.72 -0.7 150,198 + IAI47_19600 0.76 +0.6 150,199 - IAI47_19600 0.76 +1.7 150,199 - IAI47_19600 0.76 -0.4 150,321 + +0.3 150,321 + +0.1 150,321 + -0.5 150,322 - +0.6 150,345 + +1.9 150,346 - +0.9 150,408 + +0.8 150,520 - IAI47_19605 0.21 -0.1 150,534 + IAI47_19605 0.23 +1.4 150,547 + IAI47_19605 0.25 +0.9 150,548 - IAI47_19605 0.25 +0.3 150,548 - IAI47_19605 0.25 -0.0 150,584 - IAI47_19605 0.30 +0.6 150,584 - IAI47_19605 0.30 -0.6 150,672 + IAI47_19605 0.42 -1.9 150,673 - IAI47_19605 0.42 +0.8 150,716 - IAI47_19605 0.49 -0.9 150,716 - IAI47_19605 0.49 +2.1 150,716 - IAI47_19605 0.49 -0.5 150,716 - IAI47_19605 0.49 +0.3 150,724 + IAI47_19605 0.50 -1.3 150,725 - IAI47_19605 0.50 +0.1 150,831 - IAI47_19605 0.65 +1.9 150,831 - IAI47_19605 0.65 +0.0 150,852 + IAI47_19605 0.68 +1.1 150,853 - IAI47_19605 0.68 -0.1 150,922 + IAI47_19605 0.78 -0.3 150,922 + IAI47_19605 0.78 +0.4 150,922 + IAI47_19605 0.78 -0.6 150,922 + IAI47_19605 0.78 +0.4 150,922 + IAI47_19605 0.78 -1.5 150,922 + IAI47_19605 0.78 -0.9 150,922 + IAI47_19605 0.78 -0.6 150,922 + IAI47_19605 0.78 -2.9 150,922 + IAI47_19605 0.78 +0.1 150,922 + IAI47_19605 0.78 +0.3 150,922 + IAI47_19605 0.78 -0.4 150,922 + IAI47_19605 0.78 -0.9 150,923 - IAI47_19605 0.78 +0.8 150,923 - IAI47_19605 0.78 +0.6 150,923 - IAI47_19605 0.78 +0.8 150,923 - IAI47_19605 0.78 -0.9 150,923 - IAI47_19605 0.78 -0.7 150,937 + IAI47_19605 0.80 -0.5 150,937 + IAI47_19605 0.80 -1.7 150,938 - IAI47_19605 0.80 -0.9 150,965 + IAI47_19605 0.84 +0.8 150,965 + IAI47_19605 0.84 -0.1 150,999 + IAI47_19605 0.89 +0.1 150,999 + IAI47_19605 0.89 -0.3 150,999 + IAI47_19605 0.89 -0.2 150,999 + IAI47_19605 0.89 +0.9 150,999 + IAI47_19605 0.89 +1.7 150,999 + IAI47_19605 0.89 -0.1 150,999 + IAI47_19605 0.89 -1.9 151,000 - IAI47_19605 0.89 +1.3 151,000 - IAI47_19605 0.89 +0.2 151,000 - IAI47_19605 0.89 -0.9 151,000 - IAI47_19605 0.89 +0.3 151,003 + IAI47_19605 0.89 -0.5 151,003 + IAI47_19605 0.89 +1.2 151,004 - IAI47_19605 0.90 -0.9 151,004 - IAI47_19605 0.90 -0.9 151,004 - IAI47_19605 0.90 +0.8 151,004 - IAI47_19605 0.90 -0.3 151,004 - IAI47_19605 0.90 +0.8 151,004 - IAI47_19605 0.90 +1.0 151,045 + +0.6 151,045 + +2.2 151,045 + -1.6 151,045 + -2.2 151,046 - +0.5 151,046 - -0.3 151,088 + +1.0 151,088 + +0.3 151,108 - -0.1 151,108 - +0.1 151,108 - -0.5 151,108 - +0.5 151,108 - +0.4 151,108 - -1.9 151,126 + +2.0 151,126 + +0.1 151,127 - -0.9 151,252 - -0.9 151,252 - -0.2 151,253 + -1.1 151,253 + -1.3 151,253 + +0.4 151,258 + -1.5 151,258 + +1.1 151,258 + +0.1 151,258 + +1.0 151,258 + -0.1 151,258 + -0.9 151,259 - -0.1 151,259 - -0.2 151,259 - +0.1 151,259 - -1.2 151,262 + -0.3 151,263 - -1.5 151,293 + -0.5 151,293 + -0.3 151,294 - -0.4 151,294 - +0.5 151,313 - -1.5 151,373 + -0.6 151,373 + +1.7 151,373 + -2.2
Or see this region's nucleotide sequence