Strain Fitness in Pantoea sp. MT58 around IAI47_17645

Experiment: Ying_sugar7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 3
3,743,820	+		IAI47_17640	0.39	+1.0
3,743,820	+		IAI47_17640	0.39	+3.3
3,743,835	+		IAI47_17640	0.40	-0.1
3,743,871	+		IAI47_17640	0.42	-0.4
3,743,900	+		IAI47_17640	0.44	+0.3
3,743,900	+		IAI47_17640	0.44	+1.4
3,743,922	+		IAI47_17640	0.46	+1.4
3,743,922	+		IAI47_17640	0.46	-0.4
3,743,923	-		IAI47_17640	0.46	-0.4
3,743,923	-		IAI47_17640	0.46	-0.1
3,744,120	+		IAI47_17640	0.59	-1.6
3,744,121	-		IAI47_17640	0.59	+0.8
3,744,121	-		IAI47_17640	0.59	+1.3
3,744,175	+		IAI47_17640	0.62	+1.1
3,744,176	-		IAI47_17640	0.62	-4.5
3,744,214	-		IAI47_17640	0.65	+1.9
3,744,214	-		IAI47_17640	0.65	-0.3
3,744,214	-		IAI47_17640	0.65	+1.0
3,744,258	+		IAI47_17640	0.68	-0.2
3,744,259	-		IAI47_17640	0.68	-1.7
3,744,259	-		IAI47_17640	0.68	+0.1
3,744,259	-		IAI47_17640	0.68	-1.7
3,744,417	+		IAI47_17640	0.78	+0.3
3,744,417	+		IAI47_17640	0.78	+0.8
3,744,417	+		IAI47_17640	0.78	+1.1
3,744,417	+		IAI47_17640	0.78	-0.2
3,744,417	+		IAI47_17640	0.78	+0.6
3,744,418	-		IAI47_17640	0.78	-1.3
3,744,418	-		IAI47_17640	0.78	-0.0
3,744,418	-		IAI47_17640	0.78	-0.8
3,744,418	-		IAI47_17640	0.78	-0.0
3,744,418	-		IAI47_17640	0.78	-1.5
3,744,418	-		IAI47_17640	0.78	+1.4
3,744,423	+		IAI47_17640	0.79	-0.9
3,744,480	+		IAI47_17640	0.82	-0.1
3,744,480	+		IAI47_17640	0.82	-1.7
3,744,481	-		IAI47_17640	0.82	+0.1
3,744,481	-		IAI47_17640	0.82	-1.5
3,744,628	+				+1.3
3,744,628	+				+1.0
3,744,628	+				+0.7
3,744,628	+				+0.5
3,744,629	-				-1.7
3,744,629	-				-1.3
3,744,629	-				+1.7
3,744,629	-				+0.3
3,744,629	-				-0.0
3,744,631	+				+1.4
3,744,631	+				-0.4
3,744,631	+				-0.0
3,744,631	+				-0.7
3,744,631	+				+0.3
3,744,631	+				+0.3
3,744,631	+				-0.7
3,744,632	-				+0.8
3,744,632	-				+0.1
3,744,632	-				+1.1
3,744,666	+				-0.7
3,744,667	-				+0.3
3,744,667	-				-0.7
3,744,697	+				+0.3
3,744,697	+				-0.1
3,744,698	-				-0.6
3,744,698	-				-1.7
3,744,745	+				-1.6
3,744,745	+				+1.3
3,744,745	+				+0.4
3,744,745	+				+0.2
3,744,746	-				+1.7
3,744,746	-				+1.3
3,744,746	-				+0.4
3,744,773	+		IAI47_17645	0.14	-2.9
3,744,857	+		IAI47_17645	0.55	-0.6
3,744,857	+		IAI47_17645	0.55	+2.3
3,744,857	+		IAI47_17645	0.55	+0.3
3,744,857	+		IAI47_17645	0.55	-2.7
3,744,857	+		IAI47_17645	0.55	-1.7
3,744,858	-		IAI47_17645	0.56	-0.4
3,744,858	-		IAI47_17645	0.56	-0.2
3,744,859	+		IAI47_17645	0.56	-1.7
3,744,966	+				+1.3
3,745,032	+				-0.9
3,745,032	+				+0.8
3,745,032	+				-0.4
3,745,032	+				-0.2
3,745,032	+				+1.6
3,745,032	+				-2.3
3,745,032	+				-0.0
3,745,032	+				-0.4
3,745,033	-				+1.0
3,745,033	-				-0.7
3,745,033	-				+1.9
3,745,033	-				+1.3
3,745,033	-				-0.8
3,745,033	-				-0.5
3,745,148	+				+0.3
3,745,148	+				-1.0
3,745,149	-				-2.0
3,745,149	-				-0.3
3,745,149	-				-0.5
3,745,180	+				+0.3
3,745,180	+				+0.4
3,745,180	+				-0.4
3,745,180	+				+1.0
3,745,180	+				+2.0
3,745,180	+				+1.5
3,745,180	+				+1.7
3,745,180	+				+0.2
3,745,181	-				+0.5
3,745,181	-				+0.3
3,745,181	-				+0.3
3,745,181	-				-0.7
3,745,181	-				-2.1
3,745,181	-				+0.2
3,745,181	-				-1.6
3,745,181	-				-2.9
3,745,181	-				+0.6
3,745,188	+				+0.3
3,745,188	+				-0.3
3,745,189	-				-0.6
3,745,189	-				+0.3
3,745,189	-				+1.0
3,745,233	+				+1.5
3,745,233	+				-0.1
3,745,234	-				-0.4
3,745,234	-				-0.1
3,745,256	+				+0.8
3,745,263	+				-0.3
3,745,272	+				-0.0
3,745,273	-				-1.1
3,745,273	-				-0.2
3,745,273	-				-0.9
3,745,279	+				-0.5
3,745,279	+				+0.5
3,745,279	+				+0.9
3,745,279	+				-0.3
3,745,280	-				-0.3
3,745,280	-				-0.8
3,745,337	+				-0.0
3,745,337	+				+0.0
3,745,338	-				+0.3
3,745,338	-				-0.7
3,745,338	-				+0.3
3,745,346	+				-0.4
3,745,346	+				+0.7
3,745,347	-				+0.4
3,745,347	-				-1.9
3,745,390	+				-0.1
3,745,391	-				-2.0
3,745,439	+				+0.6
3,745,439	+				+0.7
3,745,440	-				-0.1
3,745,442	+				+0.2
3,745,477	-		IAI47_17650	0.10	+2.3
3,745,497	+				+1.0
3,745,497	+		IAI47_17650	0.12	-2.5
3,745,498	-		IAI47_17650	0.12	-0.3
3,745,499	+		IAI47_17650	0.12	+1.1
3,745,499	+		IAI47_17650	0.12	+0.7
3,745,499	+		IAI47_17650	0.12	+2.3
3,745,500	-		IAI47_17650	0.12	+1.1
3,745,632	+		IAI47_17650	0.21	+0.2
3,745,633	-		IAI47_17650	0.22	-0.4
3,745,633	-		IAI47_17650	0.22	-0.7
3,745,633	-		IAI47_17650	0.22	+1.4
3,745,664	+		IAI47_17650	0.24	+0.7
3,745,664	+		IAI47_17650	0.24	-0.4
3,745,664	+		IAI47_17650	0.24	-0.0
3,745,664	+		IAI47_17650	0.24	-0.9
3,745,664	+		IAI47_17650	0.24	+1.0
3,745,664	+		IAI47_17650	0.24	-0.1
3,745,664	+		IAI47_17650	0.24	+0.2
3,745,664	+		IAI47_17650	0.24	-0.3
3,745,664	+		IAI47_17650	0.24	-0.3
3,745,664	+		IAI47_17650	0.24	-0.6
3,745,665	-		IAI47_17650	0.24	-0.2
3,745,665	-		IAI47_17650	0.24	+0.9
3,745,665	-		IAI47_17650	0.24	+0.1
3,745,665	-		IAI47_17650	0.24	+1.8
3,745,665	-		IAI47_17650	0.24	-1.1
3,745,665	-		IAI47_17650	0.24	+0.8
3,745,665	-		IAI47_17650	0.24	+0.7
3,745,665	-		IAI47_17650	0.24	+0.3
3,745,684	-		IAI47_17650	0.25	+1.3
3,745,733	+		IAI47_17650	0.29	-0.3
3,745,733	+		IAI47_17650	0.29	+0.7
3,745,733	+		IAI47_17650	0.29	+0.2
3,745,734	-		IAI47_17650	0.29	+0.5
3,745,734	-		IAI47_17650	0.29	-0.7
3,745,734	-		IAI47_17650	0.29	-0.7
3,745,734	-		IAI47_17650	0.29	+0.6
3,745,734	-		IAI47_17650	0.29	-0.9
3,745,794	+		IAI47_17650	0.33	-1.0
3,745,794	+		IAI47_17650	0.33	-1.3
3,745,794	+		IAI47_17650	0.33	-2.4
3,745,794	+		IAI47_17650	0.33	+0.3
3,745,794	+		IAI47_17650	0.33	+0.3
3,745,794	+		IAI47_17650	0.33	+0.8
3,745,794	+		IAI47_17650	0.33	+0.1
3,745,794	+		IAI47_17650	0.33	+1.2
3,745,794	+		IAI47_17650	0.33	-0.5
3,745,795	-		IAI47_17650	0.33	+0.7
3,745,795	-		IAI47_17650	0.33	-0.9
3,745,795	-		IAI47_17650	0.33	+0.5
3,745,795	-		IAI47_17650	0.33	-0.3
3,745,795	-		IAI47_17650	0.33	+0.7
3,745,795	-		IAI47_17650	0.33	-0.5