Strain Fitness in Pantoea sp. MT58 around IAI47_16105

Experiment: Ying_sugar7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 3
3,405,837	-		IAI47_16100	0.54	+1.9
3,405,890	+		IAI47_16100	0.57	+0.8
3,405,890	+		IAI47_16100	0.57	-1.6
3,405,891	-		IAI47_16100	0.57	+0.3
3,405,891	-		IAI47_16100	0.57	-2.4
3,405,917	+		IAI47_16100	0.58	-1.7
3,405,917	+		IAI47_16100	0.58	-1.2
3,405,919	+		IAI47_16100	0.58	+2.0
3,405,920	-		IAI47_16100	0.59	-0.9
3,405,920	-		IAI47_16100	0.59	-2.2
3,405,920	-		IAI47_16100	0.59	+0.3
3,405,920	-		IAI47_16100	0.59	+0.9
3,405,944	+		IAI47_16100	0.60	+0.4
3,405,944	+		IAI47_16100	0.60	-2.9
3,405,945	-		IAI47_16100	0.60	+0.7
3,405,963	-		IAI47_16100	0.61	-1.1
3,405,970	+		IAI47_16100	0.61	-0.1
3,405,970	+		IAI47_16100	0.61	-0.6
3,405,970	+		IAI47_16100	0.61	-2.1
3,405,971	-		IAI47_16100	0.61	-0.5
3,405,971	-		IAI47_16100	0.61	+0.3
3,405,971	-		IAI47_16100	0.61	-0.5
3,405,971	-		IAI47_16100	0.61	-0.7
3,405,971	-		IAI47_16100	0.61	-1.3
3,405,979	+		IAI47_16100	0.62	+0.7
3,405,979	+		IAI47_16100	0.62	+0.5
3,405,979	+		IAI47_16100	0.62	-0.7
3,405,979	+		IAI47_16100	0.62	+0.5
3,405,979	+		IAI47_16100	0.62	+0.1
3,405,980	-		IAI47_16100	0.62	-1.1
3,405,980	-		IAI47_16100	0.62	+3.1
3,405,980	-		IAI47_16100	0.62	+0.3
3,405,980	-		IAI47_16100	0.62	+0.5
3,405,980	-		IAI47_16100	0.62	-0.3
3,405,980	-		IAI47_16100	0.62	-0.9
3,406,000	+		IAI47_16100	0.63	+0.8
3,406,000	+		IAI47_16100	0.63	+2.6
3,406,000	+		IAI47_16100	0.63	+2.7
3,406,000	+		IAI47_16100	0.63	-0.3
3,406,000	+		IAI47_16100	0.63	+2.2
3,406,000	+		IAI47_16100	0.63	+1.1
3,406,000	+		IAI47_16100	0.63	-0.3
3,406,001	-		IAI47_16100	0.63	+1.5
3,406,001	-		IAI47_16100	0.63	-1.5
3,406,001	-		IAI47_16100	0.63	-0.5
3,406,001	-		IAI47_16100	0.63	-1.3
3,406,001	-		IAI47_16100	0.63	-1.1
3,406,001	-		IAI47_16100	0.63	+0.3
3,406,020	-		IAI47_16100	0.64	+1.1
3,406,034	+		IAI47_16100	0.65	+1.0
3,406,034	+		IAI47_16100	0.65	+0.3
3,406,035	-		IAI47_16100	0.65	-0.2
3,406,035	-		IAI47_16100	0.65	+0.7
3,406,035	-		IAI47_16100	0.65	-2.0
3,406,127	+		IAI47_16100	0.70	-0.3
3,406,137	-		IAI47_16100	0.70	+0.7
3,406,139	+		IAI47_16100	0.70	-0.7
3,406,140	-		IAI47_16100	0.70	-1.3
3,406,300	+		IAI47_16100	0.79	-0.5
3,406,300	+		IAI47_16100	0.79	-0.7
3,406,300	+		IAI47_16100	0.79	-0.7
3,406,300	+		IAI47_16100	0.79	-0.3
3,406,300	+		IAI47_16100	0.79	-0.2
3,406,301	-		IAI47_16100	0.79	-1.7
3,406,301	-		IAI47_16100	0.79	-1.1
3,406,301	-		IAI47_16100	0.79	+1.0
3,406,301	-		IAI47_16100	0.79	+0.3
3,406,301	-		IAI47_16100	0.79	-0.3
3,406,337	+		IAI47_16100	0.81	-1.2
3,406,338	-		IAI47_16100	0.81	+2.8
3,406,338	-		IAI47_16100	0.81	-0.7
3,406,338	-		IAI47_16100	0.81	-0.6
3,406,355	+		IAI47_16100	0.82	-0.0
3,406,355	+		IAI47_16100	0.82	+0.3
3,406,356	-		IAI47_16100	0.82	+0.3
3,406,356	-		IAI47_16100	0.82	+0.4
3,406,403	+		IAI47_16100	0.84	+0.5
3,406,403	+		IAI47_16100	0.84	-0.7
3,406,403	+		IAI47_16100	0.84	-0.1
3,406,403	+		IAI47_16100	0.84	-0.2
3,406,403	+		IAI47_16100	0.84	-1.3
3,406,404	-		IAI47_16100	0.84	-0.7
3,406,404	-		IAI47_16100	0.84	+0.5
3,406,404	-		IAI47_16100	0.84	-0.0
3,406,643	+				-0.7
3,406,644	-				-0.4
3,406,677	+				+0.7
3,406,677	+				+0.7
3,406,678	-				-0.3
3,406,678	-				+0.3
3,406,678	-				-1.0
3,406,678	-				-2.7
3,406,701	+				-0.0
3,406,701	+				+0.1
3,406,701	+				-2.1
3,406,701	+				+0.3
3,406,702	-				-1.2
3,406,702	-				+0.3
3,406,704	+				+1.4
3,406,704	+				-0.5
3,406,704	+				-1.1
3,406,705	-				+1.6
3,406,705	-				-1.5
3,406,705	-				+1.5
3,406,705	-				+0.6
3,406,705	-				-0.2
3,406,745	+				-1.5
3,406,745	+				-0.7
3,406,745	+				+0.5
3,406,745	+				-0.7
3,406,745	+				-0.7
3,406,745	+				+0.3
3,406,770	+				-1.2
3,406,770	+				-1.7
3,406,770	+				-0.8
3,406,770	+				-0.0
3,406,771	-				+0.6
3,406,771	-				+0.1
3,407,308	-				-1.0
3,407,308	-				-1.5
3,407,308	-				-1.2
3,407,312	-				+0.7
3,407,312	-				-0.7
3,407,312	-				+1.0
3,407,312	-				+1.1
3,407,312	-				-0.3
3,407,332	+				-0.2
3,407,347	-				-0.2
3,407,347	-				-0.7
3,407,347	-				+1.2
3,407,354	+				+1.1
3,407,355	-				+1.0
3,407,498	+				-2.1
3,407,499	-				-0.3
3,407,520	+				-0.3
3,407,520	+				+3.0
3,407,521	-				-0.4
3,407,521	-				-1.2
3,407,521	-				-0.2
3,407,602	-				+0.3
3,407,631	+				+0.3
3,407,631	+				-1.1
3,407,724	+				-0.5
3,407,724	+				-0.9
3,407,752	+				+1.3
3,407,752	+				-0.7
3,407,802	+				-0.5
3,407,802	+				+0.3
3,407,802	+				-0.7
3,407,815	-				+1.0
3,407,843	+				-0.7
3,407,843	+				-1.3
3,407,843	+				+1.3
3,407,844	-				-0.3
3,407,906	+		IAI47_16110	0.12	-0.4
3,407,906	+		IAI47_16110	0.12	-0.3
3,407,907	-		IAI47_16110	0.12	+1.1
3,407,943	+		IAI47_16110	0.15	-2.5
3,407,943	+		IAI47_16110	0.15	-0.7
3,407,943	+		IAI47_16110	0.15	+1.4
3,407,944	-		IAI47_16110	0.15	-0.7
3,407,944	-		IAI47_16110	0.15	-0.3
3,407,944	-		IAI47_16110	0.15	-0.3
3,407,944	-		IAI47_16110	0.15	+1.7
3,407,944	-		IAI47_16110	0.15	+0.6
3,407,948	+		IAI47_16110	0.16	-2.5
3,407,948	+		IAI47_16110	0.16	+0.5
3,407,948	+		IAI47_16110	0.16	-2.2
3,407,948	+		IAI47_16110	0.16	-0.5
3,407,948	+		IAI47_16110	0.16	+1.1
3,407,948	+		IAI47_16110	0.16	-1.0
3,407,948	+		IAI47_16110	0.16	-0.5
3,407,948	+		IAI47_16110	0.16	+0.6
3,407,948	+		IAI47_16110	0.16	-0.3
3,407,948	+		IAI47_16110	0.16	-0.6
3,407,949	-		IAI47_16110	0.16	-1.6
3,407,949	-		IAI47_16110	0.16	-1.3
3,407,949	-		IAI47_16110	0.16	-0.7
3,407,949	-		IAI47_16110	0.16	+1.4
3,407,949	-		IAI47_16110	0.16	+0.5
3,407,949	-		IAI47_16110	0.16	+0.3
3,407,949	-		IAI47_16110	0.16	+0.3
3,407,949	-		IAI47_16110	0.16	+1.5
3,407,949	-		IAI47_16110	0.16	-0.8
3,407,949	-		IAI47_16110	0.16	-1.5
3,407,949	-		IAI47_16110	0.16	-0.5
3,407,949	-		IAI47_16110	0.16	+0.9
3,407,972	+		IAI47_16110	0.18	+0.6
3,407,973	-		IAI47_16110	0.18	+0.4
3,407,994	-		IAI47_16110	0.20	-1.2
3,407,994	-		IAI47_16110	0.20	+0.7
3,408,005	+		IAI47_16110	0.21	-0.1
3,408,035	+		IAI47_16110	0.23	+0.0
3,408,035	+		IAI47_16110	0.23	-0.7
3,408,036	-		IAI47_16110	0.23	+1.9
3,408,036	-		IAI47_16110	0.23	-0.0
3,408,036	-		IAI47_16110	0.23	+0.3
3,408,039	+		IAI47_16110	0.24	-0.7
3,408,040	-		IAI47_16110	0.24	+0.7
3,408,040	-		IAI47_16110	0.24	+0.7
3,408,040	-		IAI47_16110	0.24	-0.7
3,408,040	-		IAI47_16110	0.24	-1.1
3,408,077	+		IAI47_16110	0.27	+0.3
3,408,124	+		IAI47_16110	0.31	-0.5
3,408,125	-		IAI47_16110	0.31	-0.7
3,408,137	+		IAI47_16110	0.32	+1.6
3,408,137	+		IAI47_16110	0.32	+1.3
3,408,137	+		IAI47_16110	0.32	-0.7
3,408,138	-		IAI47_16110	0.32	-1.6
3,408,138	-		IAI47_16110	0.32	-0.0
3,408,152	+		IAI47_16110	0.34	+0.6
3,408,153	-		IAI47_16110	0.34	-1.0
3,408,153	-		IAI47_16110	0.34	+0.3
3,408,153	-		IAI47_16110	0.34	-0.3
3,408,180	+		IAI47_16110	0.36	+0.5
3,408,200	+		IAI47_16110	0.38	-1.0
3,408,200	+		IAI47_16110	0.38	+1.7
3,408,200	+		IAI47_16110	0.38	+0.3
3,408,200	+		IAI47_16110	0.38	+0.0
3,408,201	-		IAI47_16110	0.38	+0.3
3,408,237	+		IAI47_16110	0.41	+0.3
3,408,237	+		IAI47_16110	0.41	+1.0
3,408,237	+		IAI47_16110	0.41	-0.5
3,408,237	+		IAI47_16110	0.41	+0.3
3,408,237	+		IAI47_16110	0.41	+0.4
3,408,237	+		IAI47_16110	0.41	+0.5
3,408,237	+		IAI47_16110	0.41	+0.1
3,408,237	+		IAI47_16110	0.41	+0.4
3,408,237	+		IAI47_16110	0.41	-0.1
3,408,237	+		IAI47_16110	0.41	-1.1
3,408,238	-		IAI47_16110	0.41	+0.5
3,408,238	-		IAI47_16110	0.41	-0.0
3,408,238	-		IAI47_16110	0.41	+2.0
3,408,238	-		IAI47_16110	0.41	+0.5
3,408,238	-		IAI47_16110	0.41	+0.8
3,408,238	-		IAI47_16110	0.41	-0.3
3,408,238	-		IAI47_16110	0.41	+1.1
3,408,238	-		IAI47_16110	0.41	-2.5
3,408,238	-		IAI47_16110	0.41	-1.3
3,408,238	-		IAI47_16110	0.41	+0.4
3,408,238	-		IAI47_16110	0.41	+3.0
3,408,242	+		IAI47_16110	0.41	-0.8
3,408,242	+		IAI47_16110	0.41	-1.6
3,408,242	+		IAI47_16110	0.41	+1.2
3,408,243	-		IAI47_16110	0.41	+0.3