Strain Fitness in Pantoea sp. MT58 around IAI47_15855

Experiment: Ying_sugar7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 3
3,345,424	+		IAI47_15845	0.61	+0.7
3,345,425	-		IAI47_15845	0.61	-0.2
3,345,432	+		IAI47_15845	0.61	-1.5
3,345,442	+		IAI47_15845	0.63	+0.3
3,345,444	+		IAI47_15845	0.63	+1.3
3,345,444	+		IAI47_15845	0.63	-0.8
3,345,444	+		IAI47_15845	0.63	-0.0
3,345,444	+		IAI47_15845	0.63	-0.7
3,345,444	+		IAI47_15845	0.63	-3.2
3,345,444	+		IAI47_15845	0.63	-1.5
3,345,444	+		IAI47_15845	0.63	+0.3
3,345,445	-		IAI47_15845	0.63	+1.0
3,345,445	-		IAI47_15845	0.63	-1.7
3,345,445	-		IAI47_15845	0.63	-1.3
3,345,445	-		IAI47_15845	0.63	-0.5
3,345,445	-		IAI47_15845	0.63	-1.3
3,345,445	-		IAI47_15845	0.63	-1.7
3,345,445	-		IAI47_15845	0.63	-2.3
3,345,445	-		IAI47_15845	0.63	+0.3
3,345,445	-		IAI47_15845	0.63	-2.1
3,345,447	+		IAI47_15845	0.63	-1.7
3,345,447	+		IAI47_15845	0.63	-2.9
3,345,448	-		IAI47_15845	0.63	+0.8
3,345,448	-		IAI47_15845	0.63	-0.3
3,345,448	-		IAI47_15845	0.63	+0.8
3,345,448	-		IAI47_15845	0.63	-1.3
3,345,570	+		IAI47_15845	0.77	-2.2
3,345,571	-		IAI47_15845	0.77	+0.9
3,345,571	-		IAI47_15845	0.77	-0.2
3,345,586	-		IAI47_15845	0.79	+0.3
3,345,706	+				-1.5
3,345,706	+				+0.1
3,345,706	+				-0.7
3,345,706	+				+0.5
3,345,706	+				-1.1
3,345,706	+				-1.3
3,345,706	+				+0.5
3,345,706	+				-0.6
3,345,706	+				-1.4
3,345,707	-				-1.1
3,345,707	-				+0.4
3,345,707	-				+0.8
3,345,707	-				+1.2
3,345,707	-				-0.2
3,345,707	-				-0.3
3,345,707	-				-0.7
3,345,756	+				-0.1
3,345,756	+				+0.3
3,345,757	-				+0.3
3,345,757	-				+1.3
3,345,776	-				+0.3
3,345,790	+				-0.1
3,345,791	-				+0.5
3,345,902	+				+1.3
3,345,902	+				-0.0
3,345,902	+				-1.1
3,345,903	-				-0.2
3,345,903	-				-0.7
3,345,908	+				+1.3
3,345,909	-				-1.1
3,345,919	-				+0.5
3,345,934	+				-0.2
3,345,935	-				+1.6
3,345,935	-				-0.2
3,345,972	+				-0.2
3,345,972	+				-1.2
3,345,972	+				+0.1
3,345,973	-				+0.1
3,345,973	-				-0.9
3,346,016	+		IAI47_15850	0.14	+0.3
3,346,016	+		IAI47_15850	0.14	-0.7
3,346,017	-		IAI47_15850	0.14	-0.2
3,346,017	-		IAI47_15850	0.14	-0.7
3,346,017	-		IAI47_15850	0.14	+0.7
3,346,017	-		IAI47_15850	0.14	+0.3
3,346,017	-		IAI47_15850	0.14	-1.1
3,346,017	-		IAI47_15850	0.14	+2.1
3,346,017	-		IAI47_15850	0.14	-0.1
3,346,017	-		IAI47_15850	0.14	-0.7
3,346,017	-		IAI47_15850	0.14	-1.2
3,346,017	-		IAI47_15850	0.14	+0.8
3,346,048	+		IAI47_15850	0.21	-1.3
3,346,049	-		IAI47_15850	0.21	+2.1
3,346,049	-		IAI47_15850	0.21	-0.7
3,346,109	+		IAI47_15850	0.34	-0.3
3,346,109	+		IAI47_15850	0.34	+0.8
3,346,192	+		IAI47_15850	0.53	-0.6
3,346,192	+		IAI47_15850	0.53	-0.3
3,346,192	+		IAI47_15850	0.53	-1.9
3,346,192	+		IAI47_15850	0.53	+0.5
3,346,192	+		IAI47_15850	0.53	+0.4
3,346,193	-		IAI47_15850	0.53	-2.1
3,346,193	-		IAI47_15850	0.53	-0.3
3,346,330	-		IAI47_15850	0.83	-2.3
3,346,339	-		IAI47_15850	0.85	-1.3
3,346,381	-				+0.4
3,346,425	+				+0.8
3,346,425	+				-0.1
3,346,425	+				-0.3
3,346,425	+				+0.3
3,346,452	+				+0.6
3,346,452	+				-0.6
3,346,452	+				+1.0
3,346,452	+				+1.5
3,346,452	+				-0.5
3,346,452	+				-0.6
3,346,453	-				-1.4
3,346,453	-				+2.0
3,346,453	-				+2.1
3,346,540	+		IAI47_15855	0.11	-0.6
3,346,540	+		IAI47_15855	0.11	-1.3
3,346,540	+		IAI47_15855	0.11	+0.1
3,346,540	+		IAI47_15855	0.11	-0.1
3,346,540	+		IAI47_15855	0.11	+1.0
3,346,541	-		IAI47_15855	0.11	+0.8
3,346,541	-		IAI47_15855	0.11	-2.1
3,346,541	-		IAI47_15855	0.11	+2.3
3,346,722	+		IAI47_15855	0.24	-1.5
3,346,722	+		IAI47_15855	0.24	-0.7
3,346,723	-		IAI47_15855	0.24	+0.6
3,346,749	+		IAI47_15855	0.26	-0.7
3,346,770	+		IAI47_15855	0.27	+0.1
3,346,771	-		IAI47_15855	0.27	-0.1
3,346,771	-		IAI47_15855	0.27	+0.8
3,346,845	+		IAI47_15855	0.33	+0.5
3,346,920	-		IAI47_15855	0.38	+0.3
3,346,938	+		IAI47_15855	0.39	-0.9
3,346,939	-		IAI47_15855	0.39	-1.0
3,346,981	+		IAI47_15855	0.42	-1.5
3,346,981	+		IAI47_15855	0.42	-1.6
3,346,982	-		IAI47_15855	0.42	-0.7
3,347,007	+		IAI47_15855	0.44	-0.3
3,347,007	+		IAI47_15855	0.44	+0.5
3,347,008	-		IAI47_15855	0.44	+0.6
3,347,008	-		IAI47_15855	0.44	+0.3
3,347,008	-		IAI47_15855	0.44	-0.9
3,347,008	-		IAI47_15855	0.44	-0.6
3,347,008	-		IAI47_15855	0.44	-0.4
3,347,008	-		IAI47_15855	0.44	-0.3
3,347,008	-		IAI47_15855	0.44	-0.8
3,347,093	+		IAI47_15855	0.50	-0.2
3,347,094	-		IAI47_15855	0.51	-0.7
3,347,094	-		IAI47_15855	0.51	-0.2
3,347,104	+		IAI47_15855	0.51	-0.5
3,347,105	-		IAI47_15855	0.51	-1.2
3,347,105	-		IAI47_15855	0.51	+1.4
3,347,105	-		IAI47_15855	0.51	-2.0
3,347,105	-		IAI47_15855	0.51	-0.7
3,347,105	-		IAI47_15855	0.51	-0.7
3,347,105	-		IAI47_15855	0.51	-0.5
3,347,116	+		IAI47_15855	0.52	-2.1
3,347,116	+		IAI47_15855	0.52	-0.1
3,347,197	+		IAI47_15855	0.58	+0.6
3,347,350	+		IAI47_15855	0.69	-0.7
3,347,350	+		IAI47_15855	0.69	+0.4
3,347,350	+		IAI47_15855	0.69	-1.2
3,347,350	+		IAI47_15855	0.69	+0.8
3,347,350	+		IAI47_15855	0.69	+0.5
3,347,350	+		IAI47_15855	0.69	+0.1
3,347,351	-		IAI47_15855	0.69	-0.6
3,347,351	-		IAI47_15855	0.69	-0.1
3,347,351	-		IAI47_15855	0.69	-0.7
3,347,498	+		IAI47_15855	0.80	-0.4
3,347,498	+		IAI47_15855	0.80	+1.8
3,347,498	+		IAI47_15855	0.80	+0.5
3,347,498	+		IAI47_15855	0.80	-1.0
3,347,498	+		IAI47_15855	0.80	-1.4
3,347,498	+		IAI47_15855	0.80	+1.8
3,347,570	+		IAI47_15855	0.85	+2.6
3,347,598	+		IAI47_15855	0.87	-0.4
3,347,609	-		IAI47_15855	0.88	+0.1
3,347,609	-		IAI47_15855	0.88	+2.7
3,347,709	+				-1.7
3,347,709	+				-1.7
3,347,710	-				-1.3
3,347,718	+				-0.1
3,347,718	+				+0.0
3,347,731	+				+0.7
3,347,732	-				+1.3
3,347,777	+				-0.3
3,347,788	+				-0.2
3,347,789	-				+0.5
3,347,789	-				+0.6
3,347,789	-				-0.4
3,347,789	-				-0.7
3,347,824	+				-3.2
3,347,824	+				-1.3
3,347,825	-				+0.8
3,347,839	+				-0.7
3,347,840	-				-0.6
3,347,840	-				+0.7
3,347,840	-				+0.1
3,347,846	+				-1.1
3,348,067	+		IAI47_15860	0.25	+1.0
3,348,067	+		IAI47_15860	0.25	+3.3
3,348,067	+		IAI47_15860	0.25	-0.4
3,348,067	+		IAI47_15860	0.25	-0.4
3,348,068	-		IAI47_15860	0.25	+1.3
3,348,068	-		IAI47_15860	0.25	-0.7
3,348,068	-		IAI47_15860	0.25	+0.4
3,348,085	+		IAI47_15860	0.26	-3.4
3,348,085	+		IAI47_15860	0.26	+0.1
3,348,148	-		IAI47_15860	0.31	-0.3
3,348,148	-		IAI47_15860	0.31	+0.1
3,348,166	+		IAI47_15860	0.33	-2.3
3,348,166	+		IAI47_15860	0.33	-1.3
3,348,166	+		IAI47_15860	0.33	+0.2
3,348,166	+		IAI47_15860	0.33	+0.3
3,348,166	+		IAI47_15860	0.33	+0.8
3,348,167	-		IAI47_15860	0.33	-0.2
3,348,167	-		IAI47_15860	0.33	-0.4
3,348,167	-		IAI47_15860	0.33	+1.1
3,348,167	-		IAI47_15860	0.33	-1.3
3,348,167	-		IAI47_15860	0.33	+0.4
3,348,167	-		IAI47_15860	0.33	+0.0
3,348,167	-		IAI47_15860	0.33	-3.1
3,348,167	-		IAI47_15860	0.33	+0.3
3,348,349	-		IAI47_15860	0.48	+2.3
3,348,349	-		IAI47_15860	0.48	-0.6
3,348,401	-		IAI47_15860	0.52	+1.2
3,348,401	-		IAI47_15860	0.52	+0.3
3,348,401	-		IAI47_15860	0.52	+1.3
3,348,401	-		IAI47_15860	0.52	-1.2
3,348,576	+		IAI47_15860	0.67	-2.2
3,348,576	+		IAI47_15860	0.67	+0.9
3,348,576	+		IAI47_15860	0.67	+0.3
3,348,576	+		IAI47_15860	0.67	+1.8
3,348,577	-		IAI47_15860	0.67	+0.8
3,348,577	-		IAI47_15860	0.67	+0.6
3,348,577	-		IAI47_15860	0.67	-0.4
3,348,577	-		IAI47_15860	0.67	-1.4
3,348,577	-		IAI47_15860	0.67	+0.3
3,348,577	-		IAI47_15860	0.67	-0.1
3,348,577	-		IAI47_15860	0.67	+1.3
3,348,577	-		IAI47_15860	0.67	+1.2
3,348,578	+		IAI47_15860	0.67	+1.0
3,348,619	+		IAI47_15860	0.71	+0.1
3,348,628	+		IAI47_15860	0.71	-0.2
3,348,643	+		IAI47_15860	0.73	+1.5
3,348,643	+		IAI47_15860	0.73	+1.3
3,348,643	+		IAI47_15860	0.73	+0.0
3,348,643	+		IAI47_15860	0.73	+0.7
3,348,644	-		IAI47_15860	0.73	-3.3
3,348,644	-		IAI47_15860	0.73	-1.1
3,348,644	-		IAI47_15860	0.73	+0.3
3,348,644	-		IAI47_15860	0.73	-0.3
3,348,644	-		IAI47_15860	0.73	-1.7
3,348,644	-		IAI47_15860	0.73	+1.0
3,348,695	+		IAI47_15860	0.77	+1.3
3,348,695	+		IAI47_15860	0.77	+0.5
3,348,695	+		IAI47_15860	0.77	-0.7
3,348,695	+		IAI47_15860	0.77	-0.7
3,348,695	+		IAI47_15860	0.77	-0.4
3,348,695	+		IAI47_15860	0.77	-1.2
3,348,695	+		IAI47_15860	0.77	-0.3
3,348,695	+		IAI47_15860	0.77	-1.9
3,348,695	+		IAI47_15860	0.77	+0.6
3,348,695	+		IAI47_15860	0.77	+0.3
3,348,695	+		IAI47_15860	0.77	-0.1
3,348,696	-		IAI47_15860	0.77	+0.8
3,348,696	-		IAI47_15860	0.77	-1.3
3,348,696	-		IAI47_15860	0.77	+1.7
3,348,696	-		IAI47_15860	0.77	+1.3
3,348,696	-		IAI47_15860	0.77	-1.3
3,348,696	-		IAI47_15860	0.77	-1.3
3,348,754	+		IAI47_15860	0.82	+1.3
3,348,754	+		IAI47_15860	0.82	-0.4
3,348,755	-		IAI47_15860	0.82	+2.0
3,348,755	-		IAI47_15860	0.82	+1.0
3,348,755	-		IAI47_15860	0.82	-3.2