Strain Fitness in Pantoea sp. MT58 around IAI47_10165

Experiment: Ying_sugar7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 3
2,148,935	+		IAI47_10155	0.15	+0.5
2,148,935	+		IAI47_10155	0.15	-0.1
2,148,937	+		IAI47_10155	0.16	-1.9
2,148,938	-		IAI47_10155	0.16	-0.4
2,148,953	+		IAI47_10155	0.20	+1.3
2,148,953	+		IAI47_10155	0.20	-2.2
2,148,953	+		IAI47_10155	0.20	-0.9
2,148,954	-		IAI47_10155	0.20	+0.1
2,148,954	-		IAI47_10155	0.20	+0.1
2,148,956	-		IAI47_10155	0.20	+0.6
2,148,979	+		IAI47_10155	0.25	+0.4
2,148,980	-		IAI47_10155	0.26	+1.0
2,148,989	+		IAI47_10155	0.28	+2.0
2,148,990	-		IAI47_10155	0.28	-0.9
2,149,056	-		IAI47_10155	0.43	-0.7
2,149,056	-		IAI47_10155	0.43	-0.9
2,149,095	-		IAI47_10155	0.52	+1.4
2,149,105	+		IAI47_10155	0.54	-1.6
2,149,105	+		IAI47_10155	0.54	-2.9
2,149,106	-		IAI47_10155	0.54	+0.1
2,149,106	-		IAI47_10155	0.54	+2.1
2,149,121	+		IAI47_10155	0.58	-1.9
2,149,121	+		IAI47_10155	0.58	-1.0
2,149,122	-		IAI47_10155	0.58	+1.6
2,149,122	-		IAI47_10155	0.58	-1.4
2,149,122	-		IAI47_10155	0.58	+1.1
2,149,122	-		IAI47_10155	0.58	-1.6
2,149,238	+		IAI47_10155	0.84	+0.7
2,149,247	+		IAI47_10155	0.86	-0.3
2,149,248	-		IAI47_10155	0.86	+0.1
2,149,248	-		IAI47_10155	0.86	+1.3
2,149,262	-		IAI47_10155	0.90	+0.7
2,149,292	-				-0.9
2,149,346	+		IAI47_10160	0.11	-0.3
2,149,482	-		IAI47_10160	0.33	+0.4
2,149,482	-		IAI47_10160	0.33	-0.5
2,149,529	+		IAI47_10160	0.41	+0.4
2,149,703	+		IAI47_10160	0.68	-0.2
2,149,704	-		IAI47_10160	0.69	-0.2
2,149,761	+		IAI47_10160	0.78	-0.9
2,149,761	+		IAI47_10160	0.78	+0.3
2,149,761	+		IAI47_10160	0.78	-0.5
2,149,761	+		IAI47_10160	0.78	+0.0
2,149,762	-		IAI47_10160	0.78	+0.4
2,149,762	-		IAI47_10160	0.78	-0.9
2,149,762	-		IAI47_10160	0.78	-0.1
2,149,888	-				-0.1
2,149,899	+				-1.2
2,149,899	+				+0.8
2,149,899	+				-0.9
2,149,899	+				-0.5
2,149,899	+				-0.4
2,149,900	-				-0.0
2,149,900	-				-0.6
2,150,030	+		IAI47_10165	0.31	+0.4
2,150,031	-		IAI47_10165	0.31	-1.9
2,150,048	+		IAI47_10165	0.35	-1.0
2,150,048	+		IAI47_10165	0.35	+0.2
2,150,049	-		IAI47_10165	0.35	-0.4
2,150,049	-		IAI47_10165	0.35	-1.4
2,150,049	-		IAI47_10165	0.35	+1.0
2,150,090	+		IAI47_10165	0.44	+1.3
2,150,091	-		IAI47_10165	0.45	-0.4
2,150,161	+		IAI47_10165	0.61	-0.4
2,150,161	+		IAI47_10165	0.61	-0.9
2,150,161	+		IAI47_10165	0.61	-2.4
2,150,161	+		IAI47_10165	0.61	-0.1
2,150,161	+		IAI47_10165	0.61	-0.9
2,150,161	+		IAI47_10165	0.61	+2.0
2,150,161	+		IAI47_10165	0.61	+1.7
2,150,161	+		IAI47_10165	0.61	-0.6
2,150,162	-		IAI47_10165	0.61	-0.5
2,150,162	-		IAI47_10165	0.61	+0.1
2,150,164	+		IAI47_10165	0.61	+1.1
2,150,164	+		IAI47_10165	0.61	+0.1
2,150,164	+		IAI47_10165	0.61	-2.3
2,150,164	+		IAI47_10165	0.61	-1.1
2,150,164	+		IAI47_10165	0.61	+0.1
2,150,165	-		IAI47_10165	0.61	+2.1
2,150,165	-		IAI47_10165	0.61	+0.9
2,150,165	-		IAI47_10165	0.61	+0.1
2,150,206	+		IAI47_10165	0.71	-2.4
2,150,221	+		IAI47_10165	0.74	+0.5
2,150,316	+				+1.3
2,150,317	-				-1.6
2,150,324	+				-0.9
2,150,325	-				-0.0
2,150,370	+		IAI47_10170	0.10	-1.9
2,150,370	+		IAI47_10170	0.10	-0.5
2,150,370	+		IAI47_10170	0.10	+0.4
2,150,371	-		IAI47_10170	0.10	+0.2
2,150,371	-		IAI47_10170	0.10	-1.2
2,150,408	+		IAI47_10170	0.24	-1.5
2,150,414	-		IAI47_10170	0.26	-0.9
2,150,433	+		IAI47_10170	0.33	+1.5
2,150,451	-		IAI47_10170	0.40	-1.0
2,150,451	-		IAI47_10170	0.40	+1.1
2,150,452	+		IAI47_10170	0.40	+0.8
2,150,453	-		IAI47_10170	0.41	+1.1
2,150,453	-		IAI47_10170	0.41	+0.4
2,150,453	-		IAI47_10170	0.41	-0.9
2,150,453	-		IAI47_10170	0.41	-1.9
2,150,462	+		IAI47_10170	0.44	-0.3
2,150,463	+		IAI47_10170	0.44	-1.0
2,150,463	+		IAI47_10170	0.44	-0.1
2,150,463	+		IAI47_10170	0.44	-1.2
2,150,464	-		IAI47_10170	0.45	-0.2
2,150,464	-		IAI47_10170	0.45	+0.3
2,150,464	-		IAI47_10170	0.45	+0.3
2,150,612	+				+0.9
2,150,612	+				+0.4
2,150,613	-				+1.4
2,150,613	-				-0.1
2,150,629	+				+0.1
2,150,629	+				+1.1
2,150,629	+				+0.4
2,150,630	-				-1.4
2,150,630	-				-1.0
2,150,630	-				+1.3
2,150,630	-				-0.1
2,150,630	-				+0.4
2,150,630	-				-1.5
2,150,631	+				-1.0
2,150,632	-				-1.9
2,150,632	-				+0.4
2,150,632	-				-1.0
2,150,632	-				-0.9
2,150,652	-				+1.1
2,150,652	-				+1.4
2,150,654	+				-0.9
2,150,664	-				-1.4
2,150,704	+				+0.5
2,150,705	-				+0.1
2,150,716	+				+1.1
2,150,717	-				-1.0
2,150,732	-				-0.7
2,150,732	-				-0.0
2,150,776	-				+0.1
2,150,882	-		IAI47_10175	0.21	-0.4
2,150,895	+		IAI47_10175	0.22	-0.7
2,150,896	-		IAI47_10175	0.22	-0.3
2,150,896	-		IAI47_10175	0.22	-1.0
2,150,958	+		IAI47_10175	0.30	+0.1
2,150,983	-		IAI47_10175	0.33	+0.5
2,150,999	+		IAI47_10175	0.35	+0.1
2,151,000	-		IAI47_10175	0.35	-0.0
2,151,010	+		IAI47_10175	0.36	+2.3
2,151,010	+		IAI47_10175	0.36	+1.5
2,151,010	+		IAI47_10175	0.36	-1.4
2,151,010	+		IAI47_10175	0.36	-0.5
2,151,010	+		IAI47_10175	0.36	+0.6
2,151,010	+		IAI47_10175	0.36	-1.3
2,151,011	-		IAI47_10175	0.36	-0.3
2,151,036	+		IAI47_10175	0.39	-0.3
2,151,036	+		IAI47_10175	0.39	-1.7
2,151,036	+		IAI47_10175	0.39	+1.5
2,151,036	+		IAI47_10175	0.39	+0.4
2,151,036	+		IAI47_10175	0.39	+1.2
2,151,037	-		IAI47_10175	0.39	+1.2
2,151,037	-		IAI47_10175	0.39	-2.4
2,151,037	-		IAI47_10175	0.39	+0.7
2,151,037	-		IAI47_10175	0.39	-0.6
2,151,085	-		IAI47_10175	0.45	+1.7
2,151,114	+		IAI47_10175	0.48	+0.7
2,151,114	+		IAI47_10175	0.48	-0.3
2,151,115	-		IAI47_10175	0.48	+0.8
2,151,115	-		IAI47_10175	0.48	+0.3
2,151,115	-		IAI47_10175	0.48	-1.4
2,151,115	-		IAI47_10175	0.48	-0.6
2,151,115	-		IAI47_10175	0.48	+1.7
2,151,115	-		IAI47_10175	0.48	+2.3
2,151,165	+		IAI47_10175	0.54	-0.9
2,151,166	-		IAI47_10175	0.54	+0.7
2,151,180	+		IAI47_10175	0.56	+1.0
2,151,181	-		IAI47_10175	0.56	+2.1
2,151,207	+		IAI47_10175	0.59	-1.9
2,151,208	-		IAI47_10175	0.59	+0.1
2,151,208	-		IAI47_10175	0.59	+2.5
2,151,239	+		IAI47_10175	0.63	-1.0
2,151,239	+		IAI47_10175	0.63	-0.9
2,151,239	+		IAI47_10175	0.63	+0.1
2,151,239	+		IAI47_10175	0.63	+0.0
2,151,239	+		IAI47_10175	0.63	-0.5
2,151,239	+		IAI47_10175	0.63	-0.4
2,151,239	+		IAI47_10175	0.63	-0.7
2,151,240	-		IAI47_10175	0.63	+0.1
2,151,265	+		IAI47_10175	0.66	+0.7
2,151,265	+		IAI47_10175	0.66	+2.5
2,151,266	-		IAI47_10175	0.66	+0.1
2,151,266	-		IAI47_10175	0.66	-0.0
2,151,266	-		IAI47_10175	0.66	-0.6
2,151,330	+		IAI47_10175	0.74	+0.6
2,151,330	+		IAI47_10175	0.74	+0.1
2,151,331	-		IAI47_10175	0.74	+1.6
2,151,331	-		IAI47_10175	0.74	-0.5
2,151,331	-		IAI47_10175	0.74	-0.9
2,151,331	-		IAI47_10175	0.74	+1.0
2,151,331	-		IAI47_10175	0.74	+1.4